mRNA_A-nodosum_M_contig9635.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 107 bits (267), Expect = 2.410e-25 Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 1
Query: 4 VPLYLDNTSTLHVAGNRTYSPRAKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDF 231
+P+Y DNT+TLH GNR++S R KHIALR+FF++ELV EG I+IHYV T+D LAD+GTKH KHR L+ LIN+F
Sbjct: 1589 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 106 bits (264), Expect = 6.060e-25 Identity = 47/76 (61.84%), Postives = 60/76 (78.95%), Query Frame = 1
Query: 4 VPLYLDNTSTLHVAGNRTYSPRAKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDF 231
+P+Y DNT+TLH GNR++S R KHIALR+FF++ELV EG I+IHYV T+D LAD+GTKH HR L+ LIN+F
Sbjct: 920 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 105 bits (261), Expect = 7.600e-25 Identity = 47/76 (61.84%), Postives = 60/76 (78.95%), Query Frame = 1
Query: 4 VPLYLDNTSTLHVAGNRTYSPRAKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDF 231
+P+Y DNT+TLH GNR++S R KHIALR+FF++ELV EG I+IHY T+D LAD+GTKH KHR L+ LIN+F
Sbjct: 360 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE) HSP 1 Score: 100 bits (250), Expect = 1.110e-24 Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 1
Query: 4 VPLYLDNTSTLHVAGNRTYSPRAKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDF 231
+P+Y DNT+TLH GNR++S R KHIALR+FF++ELV EG I+IHY T+D LA +GTKH KHR L+ IN+F
Sbjct: 135 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRINNF 210
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 105 bits (261), Expect = 1.490e-24 Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query: 4 VPLYLDNTSTLHVAGNRTYSPRAKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLIND 228
+P+Y DNT+TLH GNR++S R KHIALR+FF++ELV EG I+IHYV T+D LAD+GTKH KHR L+ LIN+
Sbjct: 581 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINN 655
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE) HSP 1 Score: 100 bits (248), Expect = 8.830e-23 Identity = 43/74 (58.11%), Postives = 58/74 (78.38%), Query Frame = 1
Query: 4 VPLYLDNTSTLHVAGNRTYSPRAKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLIN 225
VPLY DNT+TLH GNR++S R KHIALR+F+++EL+ EG I+IHY+ T +AD+GTKHL KHR L+ +I+
Sbjct: 1090 VPLYCDNTATLHALGNRSFSSRTKHIALRFFYIRELISEGRISIHYIPTDSNIADIGTKHLNKHRLKHLLDIIS 1163
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 1.200e-22 Identity = 45/74 (60.81%), Postives = 60/74 (81.08%), Query Frame = 1
Query: 1 SVPLYLDNTSTLHVAGNRTYSPRAKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLI 222
S PLY+ NT+TLHV GN+T+S R KH+ALR+F+++E+V+EG I+IHY+ T+D LAD+GTKHL K RH LI I
Sbjct: 613 SAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLIDKI 685
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Match: A0A6H5J9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N2_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 1.290e-21 Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 1
Query: 4 VPLYLDNTSTLHVAGNRTYSPRAKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDFKA 237
VPLY DNT+TLH GNR++S R KHIALR+FF+++LV EG I IH+V T AD+GTKHL K R L+ +I +F
Sbjct: 278 VPLYCDNTATLHSLGNRSHSSRTKHIALRFFFIRDLVSEGKIFIHFVPTDSNPADIGTKHLNKDRFQHLLNMIKNFNV 355
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 1.450e-21 Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 1
Query: 4 VPLYLDNTSTLHVAGNRT-YSPRAKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDFKA 237
VPLY DNT+TLH GNR+ +S R KHIALR+F+++ELV EG I+IHY+ T AD+GTKHL KHR L+ +I+ F
Sbjct: 901 VPLYCDNTATLHALGNRSSFSSRTKHIALRFFYIRELVSEGRISIHYIPTDSNPADIGTKHLNKHRLKHLLDIISSFNV 979
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 2.670e-21 Identity = 45/78 (57.69%), Postives = 54/78 (69.23%), Query Frame = 1
Query: 4 VPLYLDNTSTLHVAGNRTYSPRAKHIALRYFFVQELVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDFKA 237
VPLY DNT+TLH GNR+YS KHIALR+FF++ELV EG I IHYV AD+GTKHL K R L+ +I +F
Sbjct: 643 VPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNIIKNFNV 720 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9635.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig9635.1.1 >prot_A-nodosum_M_contig9635.1.1 ID=prot_A-nodosum_M_contig9635.1.1|Name=mRNA_A-nodosum_M_contig9635.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=80bp SVPLYLDNTSTLHVAGNRTYSPRAKHIALRYFFVQELVEEGMITIHYVNTback to top mRNA from alignment at A-nodosum_M_contig9635:13145..13384+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig9635.1.1 ID=mRNA_A-nodosum_M_contig9635.1.1|Name=mRNA_A-nodosum_M_contig9635.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at A-nodosum_M_contig9635:13145..13384+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig9635:13145..13384+ >mRNA_A-nodosum_M_contig9635.1.1 ID=mRNA_A-nodosum_M_contig9635.1.1|Name=mRNA_A-nodosum_M_contig9635.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at A-nodosum_M_contig9635:13145..13384+ (Ascophyllum nodosum dioecious)back to top |