mRNA_A-nodosum_M_contig963.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig963.7.1
Unique NamemRNA_A-nodosum_M_contig963.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig963.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig963contigA-nodosum_M_contig963:193038..194399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size624
Hectar predicted targeting categoryother localisation
Exons2
Cds size510
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870478.5602899-UTR-A-nodosum_M_contig963:193037..1931491680870478.5602899-UTR-A-nodosum_M_contig963:193037..193149Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig963 193038..193149 +
1680870478.5830796-UTR-A-nodosum_M_contig963:193888..1938891680870478.5830796-UTR-A-nodosum_M_contig963:193888..193889Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig963 193889..193889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870478.6006746-CDS-A-nodosum_M_contig963:193889..1943991680870478.6006746-CDS-A-nodosum_M_contig963:193889..194399Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig963 193890..194399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig963.7.1prot_A-nodosum_M_contig963.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig963 193890..194399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig963.7.1

>prot_A-nodosum_M_contig963.7.1 ID=prot_A-nodosum_M_contig963.7.1|Name=mRNA_A-nodosum_M_contig963.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=170bp
MTPPPPLRSGAASAAGLSRSTAPPVALTAASADTSPVALRTVSNSGETRS
RGLCPDAPVPSRSLTPGPSGPPSHLAQLTAVWHTLSAATQAELCDVSLDQ
VAQGLDLARFRDLALADEEHRRALDPLLQRASFLSCSGTAARRDQEMHEE
QAREFLTRYQLVTAQQRTVD
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mRNA from alignment at A-nodosum_M_contig963:193038..194399+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig963.7.1 ID=mRNA_A-nodosum_M_contig963.7.1|Name=mRNA_A-nodosum_M_contig963.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1362bp|location=Sequence derived from alignment at A-nodosum_M_contig963:193038..194399+ (Ascophyllum nodosum dioecious)
CAGAGTTCGTTCGACTTCCGTCAACAAGCAATAAAAGAAAAGGTTCACCG
TGTGCTTCCGAGAAACGCCCTTCACAGCTCTAGAGCAAGGAGACAACAAC
GATCAACTACGCGTGAGTTTTCCTGTGCAGATCAATCGAGTCATTATAAA
ATTTGCGTCTGACTTATCCTTCCTTGCCTCCAATAGCTGGCAAACTTCTG
AACTTGCTTTCAGTTGAAAATTTTTGAGACCTTCTGCTCGCACACAAGCC
TTAGAGGATATGCCTAGCGCTCCCCTTTCGCCTGTTATGCCTCCCGAACC
CAACGTTCTCCCTGTATCGCCGACTCCCGGTTCCGCTACGAATTTTACTT
CCGCCATTCCCGGGCCGCATCTAAATGTTGATCACAACACAGCTGCTGCC
AGACAGCCCCAAGCCCTACCGGGCTCCTCCAGTACCGTACAGTCACTTTC
GCAAATACTGTCTGATATTGGCGCCATCCCATCCGACCCGGTGTTGACAA
TGCTCCGTCGGAATGTAATCCTCCCCTGACTGACAGGGCATTCCGTTACC
AGCGCCACGACGCATCTCGTTCTACTCGTACCATACACGCTGGCATGTTT
GACCCCACCGATACTCTGAGCACATTTGATCCAAATGAACACTCGATCGA
ATCCCCCGCTCAAAATTCCCTTCCTAGCCGTTTACCATTTCCGTACACTC
CCTCAAGGGAATTCAATACTCAACATGTGGCTGTTACCTGCCCGCATATG
ACTCATGCTCCAACCGCGACCGCTCGCCCGCCCTTCTCGGCCGGTGCCCG
ATTTTCCCTCCTCGACTTTCCCCCACTCGTTCCTCCGCGAGCCCTTTGCA
GCATGACTCCTCCACCACCACTCCGTTCCGGGGCCGCTTCTGCCGCTGGG
CTTTCAAGGTCGACCGCTCCACCAGTTGCCCTTACGGCTGCCTCCGCCGA
CACTTCACCGGTGGCCCTCCGAACTGTCTCCAATTCGGGAGAGACTCGCT
CCCGCGGCCTATGCCCGGACGCCCCCGTCCCCTCGAGGTCGTTGACCCCA
GGTCCCTCTGGGCCCCCTTCCCACCTGGCCCAACTCACTGCGGTATGGCA
CACCCTCTCTGCCGCCACCCAAGCTGAGCTGTGCGACGTTTCCTTAGACC
AAGTGGCGCAAGGCCTCGATCTTGCACGCTTCCGCGACCTCGCTCTCGCC
GACGAGGAGCACCGGCGAGCCCTTGACCCCCTGCTTCAACGGGCAAGCTT
CCTGTCCTGTTCAGGAACCGCTGCGCGCCGAGACCAGGAGATGCACGAGG
AACAGGCCCGCGAATTTTTGACCCGTTACCAGCTCGTCACCGCCCAACAA
AGGACCGTCGAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig963:193038..194399+

>mRNA_A-nodosum_M_contig963.7.1 ID=mRNA_A-nodosum_M_contig963.7.1|Name=mRNA_A-nodosum_M_contig963.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at A-nodosum_M_contig963:193038..194399+ (Ascophyllum nodosum dioecious)
ATGACTCCTCCACCACCACTCCGTTCCGGGGCCGCTTCTGCCGCTGGGCT
TTCAAGGTCGACCGCTCCACCAGTTGCCCTTACGGCTGCCTCCGCCGACA
CTTCACCGGTGGCCCTCCGAACTGTCTCCAATTCGGGAGAGACTCGCTCC
CGCGGCCTATGCCCGGACGCCCCCGTCCCCTCGAGGTCGTTGACCCCAGG
TCCCTCTGGGCCCCCTTCCCACCTGGCCCAACTCACTGCGGTATGGCACA
CCCTCTCTGCCGCCACCCAAGCTGAGCTGTGCGACGTTTCCTTAGACCAA
GTGGCGCAAGGCCTCGATCTTGCACGCTTCCGCGACCTCGCTCTCGCCGA
CGAGGAGCACCGGCGAGCCCTTGACCCCCTGCTTCAACGGGCAAGCTTCC
TGTCCTGTTCAGGAACCGCTGCGCGCCGAGACCAGGAGATGCACGAGGAA
CAGGCCCGCGAATTTTTGACCCGTTACCAGCTCGTCACCGCCCAACAAAG
GACCGTCGAC
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