mRNA_A-nodosum_M_contig9626.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9626.1.1
Unique NamemRNA_A-nodosum_M_contig9626.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9626.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9626contigA-nodosum_M_contig9626:2..4221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1680
Hectar predicted targeting categoryother localisation
Exons4
Cds size1680
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870478.1941955-CDS-A-nodosum_M_contig9626:1..3401680870478.1941955-CDS-A-nodosum_M_contig9626:1..340Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9626 2..340 -
1680870478.20545-CDS-A-nodosum_M_contig9626:1210..12961680870478.20545-CDS-A-nodosum_M_contig9626:1210..1296Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9626 1211..1296 -
1680870478.2185223-CDS-A-nodosum_M_contig9626:1720..19341680870478.2185223-CDS-A-nodosum_M_contig9626:1720..1934Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9626 1721..1934 -
1680870478.3031723-CDS-A-nodosum_M_contig9626:3180..42211680870478.3031723-CDS-A-nodosum_M_contig9626:3180..4221Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9626 3181..4221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9626.1.1prot_A-nodosum_M_contig9626.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9626 2..4221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9626.1.1

>prot_A-nodosum_M_contig9626.1.1 ID=prot_A-nodosum_M_contig9626.1.1|Name=mRNA_A-nodosum_M_contig9626.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=560bp
AAPSSAPTNSPTPPLTNNPTTFAPIPTSIPTPSIPPAAQTSAPTNSPTPP
TADPTTPVPIPSPIPNSTITPNLPTSAPTNSPTPPTTQPTIPAPIPSPTP
IPTKISDSPTSAPTIFQTPLTTHQMTPAPTPFLTSVPTTATAAPTSAPTN
SPPLPTIDPTTPAPLPSTTPASTITPDPQTLSPMATPTSPPRTPTNTRTP
AAKPTSTTPLTILPQAPTTTPTTTVPTTRPPTLRPSTVPSPSQFPTTQPL
FVRTWTPNFGPTPPPTILTFTPTAVPTANPTVKFIAIPSGTVTFSEAPTS
SPTAAPTAFPTATPSVMHTDDPIDTSPDETSSPLSKRSPSSAPPTSQPAD
GTPPSGAIRTVTPRTGERTVMPSSTTSSTQIPSPELFRPTSLHTLTSSPT
DATKSLTPAETVSPTGIEGSARPREASESPHGTNDPTFPPIATVTSTPAG
GTPPSSVTRTATPTTVGTPSPDIATSTPHGTPEETTSESPVLGPTEGDKP
EPTSTPTAEGLTATPSSTNFPTQIPSSEPFLTFFPTATPSTGGVTWSPTP
AWTVSPTTKE
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mRNA from alignment at A-nodosum_M_contig9626:2..4221-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9626.1.1 ID=mRNA_A-nodosum_M_contig9626.1.1|Name=mRNA_A-nodosum_M_contig9626.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4220bp|location=Sequence derived from alignment at A-nodosum_M_contig9626:2..4221- (Ascophyllum nodosum dioecious)
GCTGCACCGTCAAGCGCTCCAACAAACTCCCCAACTCCTCCTCTAACAAA
TAATCCGACGACATTTGCACCAATACCAACCTCGATACCGACTCCGTCAA
TACCACCCGCTGCACAGACGAGCGCTCCAACAAACTCCCCAACTCCTCCA
ACAGCTGACCCGACGACACCTGTACCAATACCATCCCCGATACCGAATTC
GACAATAACACCCAATCTACCGACAAGCGCTCCAACAAACTCCCCGACTC
CTCCTACAACTCAGCCGACGATACCTGCACCAATACCATCTCCGACACCG
ATACCGACAAAAATATCCGATTCACCGACGAGTGCTCCAACAATCTTCCA
AACGCCCCTTACAACTCATCAGATGACACCTGCACCAACACCATTCCTGA
CATCAGTACCGACAACAGCTACCGCTGCACCAACAAGCGCTCCAACAAAC
TCCCCACCTCTTCCAACAATTGACCCGACGACACCTGCACCTCTACCATC
CACGACACCGGCTTCGACCATAACACCCGATCCACAAACCCTTTCTCCGA
TGGCAACACCAACTTCACCGCCACGTACCCCGACCAACACACGAACACCG
GCTGCTAAGCCTACGTCGACGACACCCTTAACAATACTACCACAGGCACC
GACTACGACTCCGACGACAACGGTTCCAACCACACGACCTCCAACTTTAC
GACCTTCAACTGTTCCCTCTCCGAGTCAATTTCCCACCACCCAGCCGTTA
TTTGTCCGAACGTGGACTCCAAACTTTGGACCTACACCACCCCCCACGAT
CCTAACATTTACCCCGACTGCAGTTCCAACCGCGAACCCGACCGTAAAAT
TTATTGCAATACCGAGTGGAACTGTGACTTTTAGTGAGGCTCCAACTTCT
AGTCCGACTGCGGCTCCTACTGCATTCCCAACTGCAACTCCTTCTGTGAT
GCATACGGATGACCCTATTGATACCAGTCCGGACGAGACTTCATCACCGC
TCTCAAAACGATCCCCGAGCTCAGCCCCGCCGACTAGTCAGGTACGCCAA
TCATCCTTGACCCCCGCTCCGACCCTGTAAATGATGCTTCCGTCGTTTGA
CGTTCCATCTTTTCTAGCTCCGACTGCGATGCAGCCGCCGTCGACGCGAA
CCAAAGTTATTTGTCGTTGAATACTTCTGGCTGTACTTGACATTCGAGAG
TTTGCTCACAGACGTTCTTGCGCTATATTCTGAAACTGATGATTGCTGTA
ACAACATTCCGACCTAGGATGAAGTCTGATTACTCCAGAGCATCGAATCT
ATCCACAAAAACTCAAAATAATTTGCGGGTATGTTTCTCGGCTGGCATAC
TATGTGCCACACGAAGAGTCCATCAGAGTTCGTCGAGATCCTCCAACTTG
CGACCCATTTTGTATTTTCTCTTCGTTGGTGTGCTATGAATACCGCATTT
TAACAGAGCAACAACAGTCGGAGGTAGTAGCGACATCGGCCATTCCACAT
GATACTGAATTATACTCCGCATCAAAAGCTATGACGAGGCAATGGCCCAG
ACAACAAGCTCGCGATCTGCAACTCGAGTGTCGACGATATCGTCGTTAAA
AAACTCCGGATCCACTTCATATAGGCAATACTTCACTGACGATAGACAAA
ATCATCAACCCAACGAATTACATCAGAGTTTATGGAAGGGAAACCGTGCC
CAGAATCTCGCTTTTTTTATTTTCAGTACCGAACCTGTATTCAATGATGA
TGGTCGTGATAAAGTTCTCTTTTCACTTATGAAACAGTCGTCTGGGCCAT
CATGATACTACGAAAAGCCACCACATTGTTTCATGCGTTTCGAGAACGAT
CATCAGTGCATTCAGATTGATGTAGGATGTAGGCCAAAAAACATTTTTGC
CGGAGATGTTATTATGGAGTTCCCAGAATATTGACAGGCAGTTATTCAAA
GTTCCCACCAGTAAGAGAGAAGAGGAGCGTTTGAAATCACCGAATAACTG
TGGGAGATGACTCTCGAGTCGAGGGTATCGTGCTTCTACGAACCTGCTGC
TGCAGCCCATCATCCTATGCGTTTGTTTCTAAACTCTGCACACTTTTGTT
TCGCCCGTTTTACAAGCCCTTGTTTCGAACGTCAGCTCATAAAATATTGG
CTACAAAGCCGCTACCAAAGGGAAAGCAAGAATCAGGCTTGTGACGGGAG
AATAAGGTTTTCGCTTCTCTTCTGGTTAAGATGCCCTTTAAGAATATATG
TACCCTTCAACAACTTTGTTCCCTCGATGCCATACAGCCCGCTGATGGCA
CACCTCCATCGGGCGCTATTCGAACCGTCACACCGAGGACGGGAGAACGG
ACGGTGATGCCTTCGTCAACGACTTCCTCAACTCAGATCCCATCCCCTGA
GTTGTTTCGACCGACATCCTTGCACACGTTAACTTCCAGTCCAACAGATG
CGACGAAGTCGCTCACCCCGGCCGAGACTGTGTCGCCAACAGGCATAGAA
GGTGCGTGTTAATGTAGTACGCTAATGATGATGTTGGAAATCGGCATGAC
GAAAGTAGGAAAGTTGAGGCGAGCCAACAGATACGAAGTGTTTCAGTGTC
GGACAGATCTGGACTGGACTGGACAACACCGTTCCGACTTAACACGATGA
AATGGGATACCATTATATAACAGCGTGCATAGTACGCGCACCTGTTTGAG
TATGCATTGCGGCATACATCAGTACCTCTTTCACAATTAGCAGACATTTG
GATACGTTCATCACGAGGTTCCGGTACCGAAGACACTTCTTCCCGTTAAA
GCCGTCATGAGGCGTTAGGTGATGCTTCTGAATCTAGTATTCTCACTAAT
AGTTGACTAGATCTCAAACTTCGACCTTTGCATCTCAAGCGGTTCCGGGT
TTTCTGCGTTGTGCGATCTATGCAGGATCCGCCAGGCCTAGGGAAGCCTC
AGAGTCACCCCACGGCACCAATGACCCTACTTTCCCCCCGATAGCCACGG
TCACTTCCACGGTAAGTGCTGGCGTAGAAGGGATACGTCTACCTTCAAGG
GTGGCACTAAATTTCGTTCTTGATAATCGGGAAGACTCCAGAAAATTTGC
CCCACCTTTAAACTTCGAATTCAGAGAACGGCCCTCACTTTGTATTTTTA
AAACAGTGGTCTGGGCCACCATGATCACTATGAAAAGTTATCGCATCGTA
TAGTGCGTATCGAGAACTTTTACCAATGCATATAGCGTGATGTAGGCCAA
AAATCGTTTCTACCAGAGAAATTGTCATGGAGCTCCCAGAAAAATTATAG
TCAAATATTCAAGTTTATAGTTGTAAGAGGTGAAAACGCGTTTATGAGCA
GCAGACAATCGCGGAAGGCGACGTTAATACAGATTCGAAGGTATTGTGCT
TCTACAAACATGCTGCTGCGGCCCACCATCCTATGCATTGGTTTCCGAGC
TCTGAGCTTTTGTTTTAGTCTCGCCCGTTTTACATACCCTTGATGAACCT
TAGCTCGGGAAATATTAGTTACAAAACCACTGCTAAAGGCTAAAACAAAA
ATCAGGCTTGTGACGGCAGGATAGCGGTTTCACTTATCTTCTGCTTGTTA
AGGTTTCTTTAGGAATAGAAGGGCCCTTCAGCAACATTGTTCCTCGCGAT
ATCATGCAGCTGCCGACTACACTCTAAAATCCTCCATCTATTTCAAGTCA
AGTGCAGCTATTCTCTTCCGTCCCTCTACAAGCATGGTGAACGATATATC
TATCGTTGTTCTGTAAAAAAAACTTGTAAGCTCCCAAATTCAAGCAACAC
CCTCGTTCGTCGCCCCCCTTAGTTGCTAATACGACTTCTCTTTATCCCTC
TGGCACGACATCGACCGTCTCGAGCACACAGCCCGCTGGTGGTACACCCC
CATCGAGCGTTACTCGAACCGCTACACCGACCACAGTTGGGACACCTTCC
CCGGACATCGCGACGTCTACACCACATGGCACTCCCGAAGAAACAACATC
AGAGTCGCCCGTACTGGGTCCGACTGAAGGCGATAAACCAGAACCAACCT
CTACACCAACGGCGGAAGGATTGACGGCCACGCCTTCGTCAACGAATTTC
CCTACTCAGATCCCATCCTCTGAACCGTTTCTGACATTCTTCCCCACGGC
AACTCCCAGTACAGGAGGTGTGACGTGGTCACCCACCCCAGCCTGGACTG
TGTCGCCAACAACCAAAGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9626:2..4221-

>mRNA_A-nodosum_M_contig9626.1.1 ID=mRNA_A-nodosum_M_contig9626.1.1|Name=mRNA_A-nodosum_M_contig9626.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1680bp|location=Sequence derived from alignment at A-nodosum_M_contig9626:2..4221- (Ascophyllum nodosum dioecious)
GCTGCACCGTCAAGCGCTCCAACAAACTCCCCAACTCCTCCTCTAACAAA
TAATCCGACGACATTTGCACCAATACCAACCTCGATACCGACTCCGTCAA
TACCACCCGCTGCACAGACGAGCGCTCCAACAAACTCCCCAACTCCTCCA
ACAGCTGACCCGACGACACCTGTACCAATACCATCCCCGATACCGAATTC
GACAATAACACCCAATCTACCGACAAGCGCTCCAACAAACTCCCCGACTC
CTCCTACAACTCAGCCGACGATACCTGCACCAATACCATCTCCGACACCG
ATACCGACAAAAATATCCGATTCACCGACGAGTGCTCCAACAATCTTCCA
AACGCCCCTTACAACTCATCAGATGACACCTGCACCAACACCATTCCTGA
CATCAGTACCGACAACAGCTACCGCTGCACCAACAAGCGCTCCAACAAAC
TCCCCACCTCTTCCAACAATTGACCCGACGACACCTGCACCTCTACCATC
CACGACACCGGCTTCGACCATAACACCCGATCCACAAACCCTTTCTCCGA
TGGCAACACCAACTTCACCGCCACGTACCCCGACCAACACACGAACACCG
GCTGCTAAGCCTACGTCGACGACACCCTTAACAATACTACCACAGGCACC
GACTACGACTCCGACGACAACGGTTCCAACCACACGACCTCCAACTTTAC
GACCTTCAACTGTTCCCTCTCCGAGTCAATTTCCCACCACCCAGCCGTTA
TTTGTCCGAACGTGGACTCCAAACTTTGGACCTACACCACCCCCCACGAT
CCTAACATTTACCCCGACTGCAGTTCCAACCGCGAACCCGACCGTAAAAT
TTATTGCAATACCGAGTGGAACTGTGACTTTTAGTGAGGCTCCAACTTCT
AGTCCGACTGCGGCTCCTACTGCATTCCCAACTGCAACTCCTTCTGTGAT
GCATACGGATGACCCTATTGATACCAGTCCGGACGAGACTTCATCACCGC
TCTCAAAACGATCCCCGAGCTCAGCCCCGCCGACTAGTCAGCCCGCTGAT
GGCACACCTCCATCGGGCGCTATTCGAACCGTCACACCGAGGACGGGAGA
ACGGACGGTGATGCCTTCGTCAACGACTTCCTCAACTCAGATCCCATCCC
CTGAGTTGTTTCGACCGACATCCTTGCACACGTTAACTTCCAGTCCAACA
GATGCGACGAAGTCGCTCACCCCGGCCGAGACTGTGTCGCCAACAGGCAT
AGAAGGATCCGCCAGGCCTAGGGAAGCCTCAGAGTCACCCCACGGCACCA
ATGACCCTACTTTCCCCCCGATAGCCACGGTCACTTCCACGCCCGCTGGT
GGTACACCCCCATCGAGCGTTACTCGAACCGCTACACCGACCACAGTTGG
GACACCTTCCCCGGACATCGCGACGTCTACACCACATGGCACTCCCGAAG
AAACAACATCAGAGTCGCCCGTACTGGGTCCGACTGAAGGCGATAAACCA
GAACCAACCTCTACACCAACGGCGGAAGGATTGACGGCCACGCCTTCGTC
AACGAATTTCCCTACTCAGATCCCATCCTCTGAACCGTTTCTGACATTCT
TCCCCACGGCAACTCCCAGTACAGGAGGTGTGACGTGGTCACCCACCCCA
GCCTGGACTGTGTCGCCAACAACCAAAGAG
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