mRNA_A-nodosum_M_contig962.9.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig962.9.1
Unique NamemRNA_A-nodosum_M_contig962.9.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig962.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig962contigA-nodosum_M_contig962:112601..116326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1526
Hectar predicted targeting categoryother localisation
Exons6
Cds size1299
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig962.9.1prot_A-nodosum_M_contig962.9.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig962 113146..116195 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870476.885797-UTR-A-nodosum_M_contig962:112600..1126911680870476.885797-UTR-A-nodosum_M_contig962:112600..112691Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig962 112601..112691 +
1680870477.0208418-UTR-A-nodosum_M_contig962:113140..1131451680870477.0208418-UTR-A-nodosum_M_contig962:113140..113145Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig962 113141..113145 +
1680870477.1008177-UTR-A-nodosum_M_contig962:116195..1163261680870477.1008177-UTR-A-nodosum_M_contig962:116195..116326Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig962 116196..116326 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870477.0321586-CDS-A-nodosum_M_contig962:113145..1134431680870477.0321586-CDS-A-nodosum_M_contig962:113145..113443Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig962 113146..113443 +
1680870477.0435305-CDS-A-nodosum_M_contig962:113755..1140491680870477.0435305-CDS-A-nodosum_M_contig962:113755..114049Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig962 113756..114049 +
1680870477.058606-CDS-A-nodosum_M_contig962:114619..1147151680870477.058606-CDS-A-nodosum_M_contig962:114619..114715Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig962 114620..114715 +
1680870477.0744064-CDS-A-nodosum_M_contig962:115158..1154521680870477.0744064-CDS-A-nodosum_M_contig962:115158..115452Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig962 115159..115452 +
1680870477.0861645-CDS-A-nodosum_M_contig962:115878..1161951680870477.0861645-CDS-A-nodosum_M_contig962:115878..116195Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig962 115879..116195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig962.9.1

>prot_A-nodosum_M_contig962.9.1 ID=prot_A-nodosum_M_contig962.9.1|Name=mRNA_A-nodosum_M_contig962.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=433bp
MGKTPTAAGEDSTPATKSDSGSRDNDTLTSKLLGSSPKDKVANEAASESS
SEQSEQDKDKDNDKNDGGFVETIAEKLGMISSDEEEDKTAAAAAADANTG
PTEETPAATSEDPTPAAKSDSDSRDNDTLTSKLLGSSPKDKEANEAASES
SSEQSEQDKNNDKNDGGFVETVAEKLGMISSDEEEDKTAAPAADANADED
GGNVTGAVIGLLFGGGEARHEEGQPQDEEGPTKETSAAASEDSTPAAKSD
SDSRDNNTLTSKLFGPGPKDKVANEAAGEPTSEQSEQDKDNDKNDRGFVG
MIAEKLGLVSSEEKEDETAAPAVDADAEPTEETPAAASEDSTPAAKSDSD
SRDKSTLTSKLFGPIPKGKGANEPAAEPTSEQSEQDKDKDNDKNDGGFFG
MIAKNLGLAPSNEEEDKTAAPAAADADAGATT*
back to top

mRNA from alignment at A-nodosum_M_contig962:112601..116326+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig962.9.1 ID=mRNA_A-nodosum_M_contig962.9.1|Name=mRNA_A-nodosum_M_contig962.9.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3726bp|location=Sequence derived from alignment at A-nodosum_M_contig962:112601..116326+ (Ascophyllum nodosum dioecious)
GACCACGGTAGTGCATCTGGAGGCGTGTTTGCCTTCCCCTTAGGAGGTGG
CGAGGCCAGGCATGAAGATGGTCAGCCCCAAGACAAACAGGGTGAGACTG
GAGCCTCACCCGTCTCTGATCTTATGGTTATGCTATGATCGAACTAAGAA
AATGCGCAAATTCCCCCTCCCCCACAACATTACCTGCACCCAGGTTTTTG
TGAGCGCGTTGTTAGCGCAAAAAGGGGATGATATATAAGATATGGTGAAG
GGAATCGGACGCCGTGATCAGATGGTGCGCTGAAGTTACCCTTGCGAGAT
ACGACCCACCTGTCTCCCCTCATGGAACCATTGTCGAGAGTACTGTAATC
ACGTTTGTGATTGGTCTCGTGTCCAACTATGTCTTACGACTGTACACTTT
TATGTATCATAAATTGTACCAGGTACCGTATTTGGTATTTCTCGTCATGT
CGTAAATACCTTAGTACCGGAATATGTCTCATCGTGATGTCTTTCGATGT
AAATCTTCCGTATGGTCTTATCATATATACATGTATACAGGACCCATGGG
GAAAACCCCCACCGCCGCCGGCGAAGACTCTACCCCGGCAACAAAATCGG
ATTCGGGTAGCAGAGACAACGACACTCTCACCTCTAAGTTATTAGGCTCC
AGCCCTAAAGACAAGGTGGCCAACGAGGCCGCGTCCGAATCCTCCTCTGA
ACAGAGCGAACAAGACAAGGACAAGGACAACGACAAGAACGATGGTGGTT
TCGTTGAGACGATCGCTGAAAAGCTGGGCATGATCTCTTCGGACGAGGAG
GAGGATAAAACCGCTGCTGCTGCTGCGGCGGATGCGAATACGGGTGTGAC
CACGAGAAAGGAATAATCATTCGGTACTTGTAGGGAGACTGGTTCGAGTC
GTAATTGGTTTTGCTTTTACCAGTGTAGTAGAGTTGTTAAGGCAACGACC
CAGCCTTGGAGAAAGGACGTTCATGTTTGGCCTTGTGTCCAATTTTGTCT
TACGACGGTGCTCTTTTATGTATCATAACTTGTACCAGGTACCGTATTTG
ATATGTCTCGTCATCTCGTAAATACCTTGGTACCGGAATATGCCTATCAT
GATGTCTTTCGATTTAAATCTTCTGTATGGTCTTATCATATGTACATGTA
TACAGGACCCACGGAGGAAACCCCCGCTGCCACCAGCGAAGACCCAACCC
CGGCAGCAAAATCGGATTCGGATAGCAGAGACAACGATACTCTCACCTCT
AAGTTATTAGGCTCCAGCCCTAAAGACAAGGAGGCCAACGAGGCCGCGTC
CGAATCTTCCTCTGAACAGAGCGAACAAGACAAGAACAATGACAAGAACG
ATGGCGGTTTCGTTGAGACGGTCGCTGAAAAGCTGGGCATGATCTCTTCG
GACGAGGAGGAGGATAAAACCGCTGCTCCTGCGGCGGATGCGAATGCGGG
TGCGACCACCTAGTCTTCTTGAAAGGAATATGCATTCGGTACTTATAGGG
AGACTGATTCGAGTCTTAATTAATTTTTCTTTTGCAAGTATAGTATAGTT
GTGACCCAGCCTTGGAGGAAGGACGTTTATGTTTGGTCCTGTGTCCAATT
ATGTCTTACGACGGTACACTTTTATGTATCATAACTTGTACCAGGTGCCG
TATTTGGAATGTCTCGTCATGTCGTAAATACCTTTGTACCGGGTTATGTA
TCATGATGTTTTTCGATGCAAATCTTCCGTATGGTCTTATCATTTAAACA
TATATACAGGACCCACGGAGAAAACCCCCGCCGCCGCCAGCGAAGTCTCT
ACCCAGGCAACAAAATCGGGTTCGGATGTGACCAGCCCCCTGAAAGAGCC
CTCGGCGGACTCAAGCAGAGAACAATACTCTCACCTCTATGTTATATATA
TCATGCATATGTTTTACAGTCCTGCTTTTTGCTTATTCAACATTGCTATC
TCGACGTTTCCCTCATTCTCCTGTCCCCCCCCCCGCTAAACTTGAACGTT
AAATCTATTTTCTGAAAATATGAAGACGGTGGTAATGTAACTGGAGCCGT
AATTGGACTCCTCTTCGGAGGTGGCGAGGCCAGGCATGAAGAGGGACAGC
CCCAAGACGAAGAGGGTAAGACTGGAGCTTCACCCGTCTCTGATCTTATG
GTTATGATATGATTGAACTTGGAAAATGTGTGAACCCCCCCCCCCCCAAC
TGTACCTGCACCCAGGTTTTGGTGAGCGAGTTGTTAGTGCAAAAAGGGGA
TGATATATGAGATATGGTGAAGGAAATCGAACGCCATGATCCGATGGTGC
GCTGAGGTTACCCTCGCGAGATACGATCAACCTGCCTCCCCTCATGGAAC
CATTGTCGAGAGTACTGCAATCACGTTTGTGTTTGGTCTTGTGTCCAGCT
ATGTCTTACGACGGTACACTTTTATGTATCATAACTTGTACCAGGTACGT
ATTTGGCACGTCTCGTCATGTAAATACCTTAGTACCGGAATATGTCTCAT
CATGATGTCTCTCGATTTAAATCTTCTGTACGGTCTTATCATTTATACAC
GTATGCAGGACCCACGAAGGAAACCTCCGCCGCCGCCAGCGAAGACTCTA
CCCCGGCAGCAAAATCGGATTCGGATAGCAGAGACAACAATACTCTCACT
TCTAAGTTATTCGGCCCCGGCCCTAAAGACAAGGTGGCCAACGAGGCCGC
GGGCGAACCCACCTCTGAACAGAGCGAACAGGACAAGGACAACGACAAGA
ACGATCGCGGTTTCGTTGGGATGATCGCTGAAAAGCTGGGCCTGGTGTCT
TCGGAAGAGAAGGAGGATGAAACCGCTGCTCCTGCGGTGGATGCGGATGC
GGGTGCGACCACCCAGTCTTCTAGAAAGGAATAACAATCGGTACTTGTAG
GGAGACTGATTCGAGTCTTGATTGGTTTTGCTTTTGCCCGTATAGTAGAG
TAGTTAATGCAACGACCCAGCCTTGGAGGAAGGACGTTTGTGTTTGGTCC
TGTGTCCAATTATGTCTTACGACGGTACCCTCGCGGGATACGACCAATCT
GCCTCACCTCATGAAATATTGTCGAGAGTACTGCAATCACGTTTGTGTTT
GGTCTTGTGTCCAACTATGTCTTACGACGGTACACTTTTATGTATCATAA
CTTGTACCAGGTACCGTATTGATTGTGTCTCGTGATGTCGTAAATACCTT
GGTACCGGGTTATGTCTCATCACAATGTCTTTCTATGTAAATCTTCTGTA
CGGTCTTATCACTTATACATGTGTACAGAACCCACGGAGGAAACCCCCGC
CGCCGCCAGCGAAGACTCTACCCCGGCAGCAAAATCGGATTCGGATAGCA
GAGATAAAAGTACTCTCACCTCCAAGTTATTCGGCCCCATCCCTAAAGGC
AAGGGGGCCAATGAGCCCGCGGCCGAACCCACCTCTGAACAGAGCGAACA
AGACAAAGACAAGGATAACGACAAGAACGATGGCGGTTTCTTTGGGATGA
TCGCTAAAAATTTGGGCCTGGCCCCTTCGAACGAGGAGGAGGATAAAACC
GCTGCTCCTGCTGCGGCGGATGCGGATGCGGGTGCGACCACCTAGTCTTC
GAGAAAGGAATAAGCAATCGGTACTGGCAGGGAGACTGATTCGAGTGACT
GATTCGAGTCTCAATTGGTTTTGCTTTTGCCGGTATAGTCGAGTAGTTAA
TGCACCGACCCAGTCTTGGAGGAAGG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig962:112601..116326+

>mRNA_A-nodosum_M_contig962.9.1 ID=mRNA_A-nodosum_M_contig962.9.1|Name=mRNA_A-nodosum_M_contig962.9.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1299bp|location=Sequence derived from alignment at A-nodosum_M_contig962:112601..116326+ (Ascophyllum nodosum dioecious)
ATGGGGAAAACCCCCACCGCCGCCGGCGAAGACTCTACCCCGGCAACAAA
ATCGGATTCGGGTAGCAGAGACAACGACACTCTCACCTCTAAGTTATTAG
GCTCCAGCCCTAAAGACAAGGTGGCCAACGAGGCCGCGTCCGAATCCTCC
TCTGAACAGAGCGAACAAGACAAGGACAAGGACAACGACAAGAACGATGG
TGGTTTCGTTGAGACGATCGCTGAAAAGCTGGGCATGATCTCTTCGGACG
AGGAGGAGGATAAAACCGCTGCTGCTGCTGCGGCGGATGCGAATACGGGA
CCCACGGAGGAAACCCCCGCTGCCACCAGCGAAGACCCAACCCCGGCAGC
AAAATCGGATTCGGATAGCAGAGACAACGATACTCTCACCTCTAAGTTAT
TAGGCTCCAGCCCTAAAGACAAGGAGGCCAACGAGGCCGCGTCCGAATCT
TCCTCTGAACAGAGCGAACAAGACAAGAACAATGACAAGAACGATGGCGG
TTTCGTTGAGACGGTCGCTGAAAAGCTGGGCATGATCTCTTCGGACGAGG
AGGAGGATAAAACCGCTGCTCCTGCGGCGGATGCGAATGCGGATGAAGAC
GGTGGTAATGTAACTGGAGCCGTAATTGGACTCCTCTTCGGAGGTGGCGA
GGCCAGGCATGAAGAGGGACAGCCCCAAGACGAAGAGGGACCCACGAAGG
AAACCTCCGCCGCCGCCAGCGAAGACTCTACCCCGGCAGCAAAATCGGAT
TCGGATAGCAGAGACAACAATACTCTCACTTCTAAGTTATTCGGCCCCGG
CCCTAAAGACAAGGTGGCCAACGAGGCCGCGGGCGAACCCACCTCTGAAC
AGAGCGAACAGGACAAGGACAACGACAAGAACGATCGCGGTTTCGTTGGG
ATGATCGCTGAAAAGCTGGGCCTGGTGTCTTCGGAAGAGAAGGAGGATGA
AACCGCTGCTCCTGCGGTGGATGCGGATGCGGAACCCACGGAGGAAACCC
CCGCCGCCGCCAGCGAAGACTCTACCCCGGCAGCAAAATCGGATTCGGAT
AGCAGAGATAAAAGTACTCTCACCTCCAAGTTATTCGGCCCCATCCCTAA
AGGCAAGGGGGCCAATGAGCCCGCGGCCGAACCCACCTCTGAACAGAGCG
AACAAGACAAAGACAAGGATAACGACAAGAACGATGGCGGTTTCTTTGGG
ATGATCGCTAAAAATTTGGGCCTGGCCCCTTCGAACGAGGAGGAGGATAA
AACCGCTGCTCCTGCTGCGGCGGATGCGGATGCGGGTGCGACCACCTAG
back to top