mRNA_A-nodosum_M_contig962.14.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig962.14.1
Unique NamemRNA_A-nodosum_M_contig962.14.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig962.14.1 vs. uniprot
Match: A0A6H5L6Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z1_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.470e-11
Identity = 27/49 (55.10%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:   70 IKRMVVELYDDTSRRYNAELTAAIRKAPIPIVFINCDIWQSKVSGEKFI 216
            IK+M+VE+Y  T+R +N+EL   +R+A IPI+++NCD+W S+VSGEK+I
Sbjct:  256 IKKMIVEMYAATTRAFNSELVKDVRRALIPILYLNCDLWTSRVSGEKYI 304
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BLAST of mRNA_A-nodosum_M_contig962.14.1 vs. uniprot
Match: A0A6H5KX27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX27_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.470e-11
Identity = 27/49 (55.10%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:   70 IKRMVVELYDDTSRRYNAELTAAIRKAPIPIVFINCDIWQSKVSGEKFI 216
            IK+M+VE+Y  T+R +N+EL   +R+A IPI+++NCD+W S+VSGEK+I
Sbjct:  177 IKKMIVEMYAATTRAFNSELVKDVRRALIPILYLNCDLWTSRVSGEKYI 225
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BLAST of mRNA_A-nodosum_M_contig962.14.1 vs. uniprot
Match: D7G3L2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L2_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 4.500e-10
Identity = 24/59 (40.68%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   40 FQPERLNHKGIKRMVVELYDDTSRRYNAELTAAIRKAPIPIVFINCDIWQSKVSGEKFI 216
            F    +N+K +K+++ E+Y  T++ +NA +   +R A IPI+++NCD+W S VSG K+I
Sbjct:  106 FDVTGINNKAVKKVIAEMYHATTQEFNASMQKTLRNATIPILYVNCDLWTSHVSGLKYI 164
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BLAST of mRNA_A-nodosum_M_contig962.14.1 vs. uniprot
Match: D7G4Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z8_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 6.230e-10
Identity = 24/59 (40.68%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   40 FQPERLNHKGIKRMVVELYDDTSRRYNAELTAAIRKAPIPIVFINCDIWQSKVSGEKFI 216
            F    +N+K +K+++ ++Y  T+R +NA +   +R A IPI+++NCD+W S VSG K+I
Sbjct:  106 FDVTGINNKAVKKVIAKMYHVTTREFNASMQKTLRNATIPILYVNCDLWTSHVSGLKYI 164
[Close]
BLAST of mRNA_A-nodosum_M_contig962.14.1 vs. uniprot
Match: A0A6H5JP19_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP19_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 4.410e-7
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   79 MVVELYDDTSRRYNAELTAAIRKAPIPIVFINCDIWQSKVSGEKFI 216
            M+VE+Y+ T +  N +L   +  A IPI++ NCDIW +KVSGEKFI
Sbjct:    1 MIVEMYNATLKVVNKDLQRQLALAIIPILYANCDIWTTKVSGEKFI 46
[Close]
BLAST of mRNA_A-nodosum_M_contig962.14.1 vs. uniprot
Match: A0A6H5K7T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7T5_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 8.310e-7
Identity = 19/47 (40.43%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   70 IKRMVVELYDDTSRRYNAELTAAIRKAPIPIVFINCDIWQSKVSGEK 210
            +K+M+VE+Y  T+ ++N ++   +R+A +PI+++NCD+W SK S +K
Sbjct:   23 VKKMIVEMYAATTEKFNRQILKDVRRALVPILYMNCDLWTSKGSQDK 69
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig962.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L6Z1_9PHAE1.470e-1155.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX27_9PHAE1.470e-1155.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3L2_ECTSI4.500e-1040.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4Z8_ECTSI6.230e-1040.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP19_9PHAE4.410e-752.17Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7T5_9PHAE8.310e-740.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig962contigA-nodosum_M_contig962:160646..162118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3L2
PFAMsDimer_Tnp_hAT
Model size217
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.38e-11
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870477.6636233-CDS-A-nodosum_M_contig962:160645..1607141680870477.6636233-CDS-A-nodosum_M_contig962:160645..160714Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig962 160646..160714 +
1680870477.6777697-CDS-A-nodosum_M_contig962:161970..1621171680870477.6777697-CDS-A-nodosum_M_contig962:161970..162117Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig962 161971..162117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig962.14.1prot_A-nodosum_M_contig962.14.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig962 160646..162117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig962.14.1

>prot_A-nodosum_M_contig962.14.1 ID=prot_A-nodosum_M_contig962.14.1|Name=mRNA_A-nodosum_M_contig962.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=72bp
HCLSLIRGEEKDRFQPERLNHKGIKRMVVELYDDTSRRYNAELTAAIRKA
PIPIVFINCDIWQSKVSGEKFI
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mRNA from alignment at A-nodosum_M_contig962:160646..162118+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig962.14.1 ID=mRNA_A-nodosum_M_contig962.14.1|Name=mRNA_A-nodosum_M_contig962.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1473bp|location=Sequence derived from alignment at A-nodosum_M_contig962:160646..162118+ (Ascophyllum nodosum dioecious)
CACTGCCTCTCCCTCATTCGCGGTGAAGAGAAGGACAGGTTTCAACCGGA
GCGTCTCAACCACAAgGGGGTAAGTTTGTTGATGACGTAATTGTATCATG
GTCACGGTGCCAGCCGATACAGTAGTGTCCTGTACCTGGTGTCAGTGGTC
AGTGCCCTTATACCCTGGACGATATGCCATTGGATCGGATATCGGATTTT
CGATAGGCCAGAAATTGTCCATATCGATACCTATCGTAGCCCATCACGCC
AGAGGATTCGAAGCTATCGATATGTATCGGAAGCAGACGATAGGTCGGTG
CAATAGGCCACGATAACATATTGCGCAATCAATAGGGTGGAGGGAGCGGC
CTATCGATAGGTATTGCAGGGTTGCGCAATCTTCGCCGGCAGCTATCGCA
AAAAGATATAGCGTTGTTTGAGTGACGATCGATACCTATCACTTTGAACG
ATAGGCGAAGTCAATGATCGATCAATGCCTATTGGCTTTTAACAATATGT
GAGTCGATACCAATTGGTCGTCGATACCCATCGGTGTGGACGATATATGG
TGCCTATTGATCTATTTCGTGCATCCATATATCCATATATAATATGGATA
TATTAATATTTATATGCGTATGTAGTGGTATGTATACGTATACATATTAT
ATTATATATTACTCGGAGTATATCACATTATATAGGAGTATATAAATAAT
ATAATACAAATATATTGTAATATATTACTATACTATATAATATAGACTAA
TATATATTATATTAATTAATAATATTAATATAATATTACTCCGATTATAT
TATTAAAATATTTGTATACATGCAAATAATACAATTATGTATATTAATAA
ATATAATAAGTATACTTTTAATTTATTTTATTATATGTATTATATAAAAA
TATTATATATATTAATATAATTTATTAATATGATATATATAGCACGATAT
ATAGATATAGACAATATATATTCATATTGGCATATAATAATATATTATAT
ATGATATATATAGATATAGACAATATATATTAATATTGGCATATAATAAT
ATATTATATATATGTGAGTTATATATAATATATATTTTTAACATTAAATA
TGTACTTTTATATATTAATATCAATTATTAATACATGTATAGAAAGTGGT
AGAAAAGGGGCTGGTGTGTTATTAATAATATAATAAAAATAGGTGAGCGG
AAAGATAACTATGCTTGCACAATGTGGTGGCGTCGTTAGCGCGTACCCCG
CTGCACTTGTTCACAACATTTCTGTTCGTGGTTCGTACTGCCCACTGCCC
ACGACCCACCGCTCCAATACCGCAGATCAAGAGGATGGTGGTCGAGCTCT
ACGACGACACCTCCAGGAGGTACAACGCCGAACTAACTGCAGCGATTCGC
AAGGCCCCCATCCCTATCGTGTTCATCAACTGCGACATTTGGCAGAGCAA
GGTGTCAGGAGAAAAGTTCATCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig962:160646..162118+

>mRNA_A-nodosum_M_contig962.14.1 ID=mRNA_A-nodosum_M_contig962.14.1|Name=mRNA_A-nodosum_M_contig962.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at A-nodosum_M_contig962:160646..162118+ (Ascophyllum nodosum dioecious)
CACTGCCTCTCCCTCATTCGCGGTGAAGAGAAGGACAGGTTTCAACCGGA
GCGTCTCAACCACAAgGGGATCAAGAGGATGGTGGTCGAGCTCTACGACG
ACACCTCCAGGAGGTACAACGCCGAACTAACTGCAGCGATTCGCAAGGCC
CCCATCCCTATCGTGTTCATCAACTGCGACATTTGGCAGAGCAAGGTGTC
AGGAGAAAAGTTCATC
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