mRNA_A-nodosum_M_contig9600.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9600.12.1
Unique NamemRNA_A-nodosum_M_contig9600.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig9600.12.1 vs. uniprot
Match: D8LB82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB82_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.280e-25
Identity = 66/115 (57.39%), Postives = 81/115 (70.43%), Query Frame = 1 
Query:  202 AVLAGARAKNAQV-LVRNMTLYRGRGKGVMIDSAGGTRGRAGKESA----------KKTAKAKTEPCLFFCKYGKCSKSDEECPYEHDKTKVAVCRAFLR-GECDKKDECLLTHA 510
            AV+AGARAK  ++ +VRNMTLYRG+G+  ++ +        GKE+A          KKT  A  EPCLFFC++GKCSKSDEEC Y HD+ KVAVCRAFLR G CDK ++CLLTHA
Sbjct:  715 AVVAGARAKRTRLQVVRNMTLYRGKGQVAVVGT--------GKEAASXXXXXXXSNKKTKTA--EPCLFFCRFGKCSKSDEECRYVHDRAKVAVCRAFLRKGGCDKGNKCLLTHA 819
[Close]
BLAST of mRNA_A-nodosum_M_contig9600.12.1 vs. uniprot
Match: A0A6H5KC32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC32_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 5.230e-24
Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:  220 RAKNAQV-LVRNMTLYRGRGKGVMIDSAGGTRGRAGKESAKKTAKAKT-EPCLFFCKYGKCSKSDEECPYEHDKTKVAVCRAFLR-GECDKKDECLLTHA 510
            RAK  ++ +VRNMTLYRG+G+  ++ +    +  A   +AK+ +  KT EPCLFFC++GKCS+SDEEC Y HD+ KVAVCRAFLR G CDK D+CLLTHA
Sbjct:  738 RAKRTRLQVVRNMTLYRGKGQVAVVGTG---KEAASAAAAKRKSNNKTGEPCLFFCRFGKCSRSDEECRYVHDRAKVAVCRAFLRKGGCDKGDKCLLTHA 834
[Close]
BLAST of mRNA_A-nodosum_M_contig9600.12.1 vs. uniprot
Match: A0A1Y1Y6V5_9FUNG (Uncharacterized protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y6V5_9FUNG)

HSP 1 Score: 60.1 bits (144), Expect = 1.750e-7
Identity = 24/52 (46.15%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:  352 AKTEPCLFFCKYGKCSKSDEECPYEHDKTKVAVCRAFLRGECDKKDECLLTH 507
            A+++ C +F ++G+CSK  + CPY HD  +VA+C  FLRG C+K +EC  +H
Sbjct:  269 ARSKYCQYFNRFGRCSKGSK-CPYIHDPKRVAICTKFLRGACEKPEECPFSH 319
[Close]
BLAST of mRNA_A-nodosum_M_contig9600.12.1 vs. uniprot
Match: UPI00106DCF26 (zinc finger CCCH domain-containing protein 3-like isoform X1 n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106DCF26)

HSP 1 Score: 60.1 bits (144), Expect = 1.990e-7
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:  340 KTAKAKTEP-CLFFCKYGKCSKSDE-ECPYEHDKTKVAVCRAFLRGECDK 483
            K  K+K+E  C+FF K+GKC+K ++ +CPY HD TK+AVC  FLRG+C +
Sbjct:  695 KKQKSKSEEYCMFFNKFGKCTKKEQGKCPYVHDPTKIAVCTRFLRGKCQQ 744
[Close]
BLAST of mRNA_A-nodosum_M_contig9600.12.1 vs. uniprot
Match: A0A1W0A1W5_9STRA (Smad-interacting and CPSF-like n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1W5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.610e-7
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:  352 AKTEPCLFFCKYGKCSKSDEECPYEHDKTKVAVCRAFLRGECDKKDECLLTH 507
            ++TE CL++ ++G C+K +  CPY HD  KVAVCR FLR ECD   +C L+H
Sbjct:  106 SRTEYCLYYNRFGVCNKKNA-CPYIHDSRKVAVCRKFLRNECDDP-KCTLSH 155
[Close]
BLAST of mRNA_A-nodosum_M_contig9600.12.1 vs. uniprot
Match: T0QWW2_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QWW2_SAPDV)

HSP 1 Score: 58.2 bits (139), Expect = 3.370e-7
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:  343 TAKAKTEPCLFFCKYGKCSKSDEECPYEHDKTKVAVCRAFLRGECDKKDECLLTH 507
            +A  +TE C ++ ++G C+K +  CP+ HD  KVAVCR FLRGECD    C L+H
Sbjct:   61 SATTRTEYCRYYTRFGVCNKQNA-CPFIHDSRKVAVCRKFLRGECDDA-ACTLSH 113
[Close]
BLAST of mRNA_A-nodosum_M_contig9600.12.1 vs. uniprot
Match: A0A7D9EIL7_PARCT (Zinc finger CCCH domain-containing 3-like n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9EIL7_PARCT)

HSP 1 Score: 59.3 bits (142), Expect = 3.640e-7
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:  340 KTAKAKTEP-CLFFCKYGKCSKSDE-ECPYEHDKTKVAVCRAFLRGECDKKD-ECLLTH 507
            K  K+K+E  C+F+ K+GKC+K  + +CPY HD TK+AVC  FLRG+C + D  C  +H
Sbjct:  719 KKQKSKSEEYCMFYNKFGKCTKHTQGKCPYIHDPTKIAVCTRFLRGKCQQMDGTCPFSH 777
[Close]
BLAST of mRNA_A-nodosum_M_contig9600.12.1 vs. uniprot
Match: T0SBE1_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0SBE1_SAPDV)

HSP 1 Score: 58.2 bits (139), Expect = 5.270e-7
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:  343 TAKAKTEPCLFFCKYGKCSKSDEECPYEHDKTKVAVCRAFLRGECDKKDECLLTH 507
            +A  +TE C ++ ++G C+K +  CP+ HD  KVAVCR FLRGECD    C L+H
Sbjct:  113 SATTRTEYCRYYTRFGVCNKQNA-CPFIHDSRKVAVCRKFLRGECDDA-ACTLSH 165
[Close]
BLAST of mRNA_A-nodosum_M_contig9600.12.1 vs. uniprot
Match: A0A482WFT7_LAOST (Uncharacterized protein n=1 Tax=Laodelphax striatellus TaxID=195883 RepID=A0A482WFT7_LAOST)

HSP 1 Score: 58.5 bits (140), Expect = 6.920e-7
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:  340 KTAKAKTEPCLFFCKYGKCS-KSDEECPYEHDKTKVAVCRAFLRGECDKKDECLLTH 507
            K  +   EPC  + ++GKCS K +  C   HDK  VAVCR FLRG+CD K+ CLL+H
Sbjct:  868 KKMRKNNEPCPIYHRFGKCSGKENGSCCRVHDKKHVAVCRRFLRGDCDNKN-CLLSH 923
[Close]
BLAST of mRNA_A-nodosum_M_contig9600.12.1 vs. uniprot
Match: W2R4W0_PHYPN (C3H1-type domain-containing protein n=9 Tax=Phytophthora parasitica TaxID=4792 RepID=W2R4W0_PHYPN)

HSP 1 Score: 57.0 bits (136), Expect = 1.700e-6
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:  337 KKTAKAKTEPCLFFCKYGKCSKSDEECPYEHDKTKVAVCRAFLRGECDKKDECLLTH 507
            KK  K +TE C F+ ++G C K+ EEC + HD  +VA+CR FL+ EC+   +CLL+H
Sbjct:  237 KKNVKVRTEYCSFYNRFGYC-KNKEECRFIHDSRRVAMCRKFLKNECNDP-KCLLSH 291
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9600.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LB82_ECTSI1.280e-2557.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KC32_9PHAE5.230e-2458.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y1Y6V5_9FUNG1.750e-746.15Uncharacterized protein n=1 Tax=Basidiobolus meris... [more]
UPI00106DCF261.990e-754.00zinc finger CCCH domain-containing protein 3-like ... [more]
A0A1W0A1W5_9STRA2.610e-751.92Smad-interacting and CPSF-like n=1 Tax=Thraustothe... [more]
T0QWW2_SAPDV3.370e-749.09Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A7D9EIL7_PARCT3.640e-749.15Zinc finger CCCH domain-containing 3-like n=2 Tax=... [more]
T0SBE1_SAPDV5.270e-749.09Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A482WFT7_LAOST6.920e-750.88Uncharacterized protein n=1 Tax=Laodelphax striate... [more]
W2R4W0_PHYPN1.700e-647.37C3H1-type domain-containing protein n=9 Tax=Phytop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9600contigA-nodosum_M_contig9600:16407..16916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LB82
Preferred nameZC3H3
PFAMszf-CCCH
Model size512
Max annot lvl2759|Eukaryota
KEGG koko:K06093
KEGG Pathwayko04015,ko04144,ko04360,ko04390,ko04391,ko04530,ko05165,map04015,map04144,map04360,map04390,map04391,map04530,map05165
Hectar predicted targeting categoryother localisation
GOsGO:0000981,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005847,GO:0005849,GO:0006139,GO:0006355,GO:0006357,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010646,GO:0010647,GO:0010793,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0016973,GO:0019219,GO:0019222,GO:0023051,GO:0023056,GO:0031123,GO:0031124,GO:0031323,GO:0031326,GO:0031503,GO:0031974,GO:0031981,GO:0032239,GO:0032386,GO:0032879,GO:0032880,GO:0032925,GO:0032927,GO:0032991,GO:0033036,GO:0033157,GO:0034613,GO:0034641,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046332,GO:0046483,GO:0046822,GO:0046825,GO:0046831,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051049,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0070412,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0090087,GO:0090092,GO:0090100,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0098787,GO:0098789,GO:0140098,GO:0140110,GO:1901360,GO:1901363,GO:1903506,GO:1903827,GO:2000112,GO:2000197,GO:2001141
Exons1
Evalue2.1e-26
EggNOG OGsCOG5084@1|root,KOG1492@2759|Eukaryota
Descriptionzinc finger
Cds size510
COG categoryJ
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870476.0243075-CDS-A-nodosum_M_contig9600:16406..169161680870476.0243075-CDS-A-nodosum_M_contig9600:16406..16916Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9600 16407..16916 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9600.12.1prot_A-nodosum_M_contig9600.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9600 16407..16916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9600.12.1

>prot_A-nodosum_M_contig9600.12.1 ID=prot_A-nodosum_M_contig9600.12.1|Name=mRNA_A-nodosum_M_contig9600.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=170bp
EAVVSVSATEASRQGTKKPAPTAGNVPLSASRVSKPPLVSSATRSPAKTA
AVLRKPRGRNVVSGRASAVLAGARAKNAQVLVRNMTLYRGRGKGVMIDSA
GGTRGRAGKESAKKTAKAKTEPCLFFCKYGKCSKSDEECPYEHDKTKVAV
CRAFLRGECDKKDECLLTHA
back to top

mRNA from alignment at A-nodosum_M_contig9600:16407..16916-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9600.12.1 ID=mRNA_A-nodosum_M_contig9600.12.1|Name=mRNA_A-nodosum_M_contig9600.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=510bp|location=Sequence derived from alignment at A-nodosum_M_contig9600:16407..16916- (Ascophyllum nodosum dioecious)
GAAGCGGTCGTCTCGGTCTCAGCGACTGAAGCTTCCCGACAAGGGACGAA
GAAGCCGGCACCTACGGCGGGAAACGTCCCCCTATCGGCGTCAAGGGTAA
GCAAACCACCCTTGGTCTCTTCGGCGACAAGATCGCCCGCTAAGACGGCC
GCGGTGCTGAGAAAGCCCCGTGGGCGTAACGTGGTGTCCGGGAGAGCGTC
TGCGGTTTTGGCGGGCGCCCGTGCCAAGAACGCGCAAGTGCTGGTGCGCA
ACATGACGCTGTACCGTGGGAGGGGAAAGGGGGTCATGATCGATTCCGCG
GGTGGGACGAGGGGCCGTGCGGGCAAGGAGTCGGCCAAGAAAACGGCGAA
AGCGAAGACGGAGCCGTGCCTCTTTTTTTGCAAGTACGGCAAATGCTCCA
AGTCTGACGAGGAGTGTCCGTATGAGCACGACAAGACGAAGGTCGCCGTC
TGTCGAGCATTTCTGAGAGGCGAATGCGATAAGAAGGACGAGTGCCTTCT
TACGCATGCC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig9600:16407..16916-

>mRNA_A-nodosum_M_contig9600.12.1 ID=mRNA_A-nodosum_M_contig9600.12.1|Name=mRNA_A-nodosum_M_contig9600.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at A-nodosum_M_contig9600:16407..16916- (Ascophyllum nodosum dioecious)
GAAGCGGTCGTCTCGGTCTCAGCGACTGAAGCTTCCCGACAAGGGACGAA
GAAGCCGGCACCTACGGCGGGAAACGTCCCCCTATCGGCGTCAAGGGTAA
GCAAACCACCCTTGGTCTCTTCGGCGACAAGATCGCCCGCTAAGACGGCC
GCGGTGCTGAGAAAGCCCCGTGGGCGTAACGTGGTGTCCGGGAGAGCGTC
TGCGGTTTTGGCGGGCGCCCGTGCCAAGAACGCGCAAGTGCTGGTGCGCA
ACATGACGCTGTACCGTGGGAGGGGAAAGGGGGTCATGATCGATTCCGCG
GGTGGGACGAGGGGCCGTGCGGGCAAGGAGTCGGCCAAGAAAACGGCGAA
AGCGAAGACGGAGCCGTGCCTCTTTTTTTGCAAGTACGGCAAATGCTCCA
AGTCTGACGAGGAGTGTCCGTATGAGCACGACAAGACGAAGGTCGCCGTC
TGTCGAGCATTTCTGAGAGGCGAATGCGATAAGAAGGACGAGTGCCTTCT
TACGCATGCC
back to top