mRNA_A-nodosum_M_contig960.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig960.1.1
Unique NamemRNA_A-nodosum_M_contig960.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig960.1.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.600e-19
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 2 
Query:  182 ADAASVDAGEVVTVTIEAPLFDTRLSPDGGCDPAGCSGDLTRDGDITTQDSRWSCKPELGSAGSTCSIIYNL 397
            ADAA V+A  + TVT  A L+D RLS D GCDP+GC  +LTRDGD T+ +SRWSC+P LG AGS C I Y L
Sbjct:   20 ADAAIVEASTLATVTAVADLYDPRLSADNGCDPSGCVAELTRDGDATSLESRWSCQPALGDAGSVCRITYGL 91
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BLAST of mRNA_A-nodosum_M_contig960.1.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 8.990e-19
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 2 
Query:  182 ADAASVDAGEVVTVTIEAPLFDTRLSPDGGCDPAGCSGDLTRDGDITTQDSRWSCKPELGSAGSTCSIIYNL 397
            ADAASV+A  +  VT  A L+D RLS + GCDP+GC  +LTRDGD T+ +SRW+CKP LG AGS C I Y L
Sbjct:    3 ADAASVEASTLANVTAVAELYDPRLSAESGCDPSGCVAELTRDGDATSLESRWACKPALGDAGSECRITYGL 74
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BLAST of mRNA_A-nodosum_M_contig960.1.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.150e-18
Identity = 42/72 (58.33%), Postives = 52/72 (72.22%), Query Frame = 2 
Query:  182 ADAASVDAGEVVTVTIEAPLFDTRLSPDGGCDPAGCSGDLTRDGDITTQDSRWSCKPELGSAGSTCSIIYNL 397
            ADAA V+A  + TVT  A L+D  LS + GCDP+GC  +LTRDGD+T+ +SRWSC+P LG AGS C I Y L
Sbjct:   21 ADAAIVEASTLATVTAVADLYDPSLSAENGCDPSGCVAELTRDGDVTSLESRWSCQPALGDAGSECRITYGL 92
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BLAST of mRNA_A-nodosum_M_contig960.1.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 4.300e-18
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 2 
Query:  188 AASVDAGEVVTVTIEAPLFDTRLSP-DGGCDPAGCSGDLTRDGDITTQDSRWSCKPELGSAGSTCSIIYNL 397
            AA V+A  + TVT+ APL+DT ++  DGGC P GC GD TRDGD T+ +SRWSCKP LG AGS C I Y L
Sbjct:   23 AAVVEASTLATVTVAAPLYDTTVTASDGGCSPTGCIGDNTRDGDATSVESRWSCKPALGDAGSVCRITYGL 93
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BLAST of mRNA_A-nodosum_M_contig960.1.1 vs. uniprot
Match: D7G5L7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L7_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.500e-13
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 2 
Query:  197 VDAGEVVTVTIEAPLFDTRLSPDGGCDPAGCSGDLTRDGDITTQDSRWSCKPELGSAGSTCSIIYN 394
            V+AGE+ TVT  A L+D RL    GCDP GC+  LTRDGD++ +DSRWSC PELG     CSI Y+
Sbjct:   42 VEAGELGTVTATADLYDDRLGDTVGCDPDGCTAALTRDGDMS-EDSRWSCAPELGGL---CSISYD 103
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BLAST of mRNA_A-nodosum_M_contig960.1.1 vs. uniprot
Match: D7FL48_ECTSI (Leucine rich repeat carbohydrate binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL48_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 5.200e-13
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 2 
Query:  197 VDAGEVVTVTIEAPLFDTRLSPDGGCDPAGCSGDLTRDGDITTQDSRWSCKPELGSAGSTCSIIYNL 397
            V+AGE+ TVT  A L+D RL    GCDP GC+  LTRDGD++ +DSRWSC PELG     CSI Y+L
Sbjct:  180 VEAGELGTVTATADLYDDRLGDTVGCDPEGCTAALTRDGDMS-EDSRWSCAPELGGL---CSISYDL 242
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BLAST of mRNA_A-nodosum_M_contig960.1.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 9.010e-12
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 2 
Query:  218 TVTIEAPLFDTRLSPDGGCDPAGCSGDLTRDGDITTQDSRWSCKPELGSAGSTCSIIYNL 397
            TVT  A LFD  L+ D GCDPAGC+  LTRDGD T   SRWSC   LG  G+ CSI Y+L
Sbjct:  250 TVTTTADLFDPALAIDNGCDPAGCTAALTRDGD-TGDASRWSCATNLGGEGAVCSISYDL 308
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BLAST of mRNA_A-nodosum_M_contig960.1.1 vs. uniprot
Match: D7G277_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G277_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.860e-10
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 2 
Query:  194 SVDAGEVVTVTIEAPLFDTRLSPDGGCDPAGCSGDLTRDGDITTQDSRWSCKPEL-----GSAGSTCSIIYNLSD 403
            +V+AGEV TVT+    FD R   DG C P GC+G+ TRDGD+T  +SRWSC   L     G+AG  C +++ L +
Sbjct:  247 AVEAGEVTTVTVTTNAFDARTDDDG-CAPDGCTGENTRDGDLT-DNSRWSCSAGLVEAAGGAAGEECQVMFELGE 319
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig960.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KFA6_9PHAE3.600e-1961.11F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5KH45_9PHAE8.990e-1959.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTH1_ECTSI3.150e-1858.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KL74_9PHAE4.300e-1860.56F5/8 type C domain-containing protein n=3 Tax=Ecto... [more]
D7G5L7_ECTSI1.500e-1357.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FL48_ECTSI5.200e-1358.21Leucine rich repeat carbohydrate binding protein n... [more]
D7FZZ4_ECTSI9.010e-1260.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G277_ECTSI4.860e-1046.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig960contigA-nodosum_M_contig960:23750..24650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FL48
PFAMsLRR_8
Model size403
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.54e-18
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
Descriptionregulation of response to stimulus
Cds size285
COG categoryU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870474.6016483-UTR-A-nodosum_M_contig960:23749..238671680870474.6016483-UTR-A-nodosum_M_contig960:23749..23867Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig960 23750..23867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870474.613441-CDS-A-nodosum_M_contig960:23867..240561680870474.613441-CDS-A-nodosum_M_contig960:23867..24056Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig960 23868..24056 +
1680870474.6231756-CDS-A-nodosum_M_contig960:24554..246501680870474.6231756-CDS-A-nodosum_M_contig960:24554..24650Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig960 24555..24650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig960.1.1prot_A-nodosum_M_contig960.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig960 23868..24650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig960.1.1

>prot_A-nodosum_M_contig960.1.1 ID=prot_A-nodosum_M_contig960.1.1|Name=mRNA_A-nodosum_M_contig960.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=95bp
MIYNKTKLAAFIALLATSFAVADAASVDAGEVVTVTIEAPLFDTRLSPDG
GCDPAGCSGDLTRDGDITTQDSRWSCKPELGSAGSTCSIIYNLSD
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mRNA from alignment at A-nodosum_M_contig960:23750..24650+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig960.1.1 ID=mRNA_A-nodosum_M_contig960.1.1|Name=mRNA_A-nodosum_M_contig960.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=901bp|location=Sequence derived from alignment at A-nodosum_M_contig960:23750..24650+ (Ascophyllum nodosum dioecious)
AGCGCCTTAATCATCTTCTGCCTCGAACAGCACAAGCAGAAAGGAAATAT
TAATAAGTTTGGATCGCGTCGCGTTTTCTGCAGCATATCGGCACTTTTGT
TTTTCGAATAAATCTACAATGATTTATAACAAGACCAAGTTGGCAGCCTT
TATCGCCCTGCTGGCAACATCATTTGCTGTGGCTGATGCGGCCAGCGTTG
ACGCTGGGGAAGTGGTTACTGTAACCATCGAAGCGCCCCTCTTCGACACC
CGCCTTAGTCCCGACGGTGGCTGCGATCCAGCTGGCTGCTCGGGTGATTT
AACAAGGGTAAGTTGCGATATGGTGGAATATATTTAATTTCAGTTGACTC
CATCATCAGCGTTCAAACCTGGCTATAGGTAGTAGCCAGAACCACATGTT
GCACACATCATAGGGGAATATGGAGAGCAAGCAACGGTGATCGGCTGCAG
AATGTGGACTACTTCCTCCGTACACCATCGAATCGGTAGATTGTTGGAAG
TCTAATTGGGTTTGGTTGTGTATAGCGCAACGCTTGTAGTAGTAGTAGCA
GCTCTCTATCCGATGTAGGTAGGTGTATATCACCCCTAGCGGTAGAACAA
CGCTTGTTGTAGCGACAGAATCAAAGGGCTCACACTAAATATACTGTACT
AGGTACTACTGTATCTGAAATAGGCTGTATTTTTTTTTGCCAGAGTTGTA
GATAGCCCGAAGTTCAAACGCTTGTCCTCTCAAATACGTATGAGAACTAT
ACGAAACATAAAATATACGAAGCTTTCATTCGTACTTTGTGTTGCATTGC
TACAGGATGGAGATATCACGACGCAAGACTCCCGATGGTCTTGTAAGCCC
GAGCTCGGCAGCGCTGGTTCGACATGCTCTATCATCTACAACCTGTCTGA
C
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Coding sequence (CDS) from alignment at A-nodosum_M_contig960:23750..24650+

>mRNA_A-nodosum_M_contig960.1.1 ID=mRNA_A-nodosum_M_contig960.1.1|Name=mRNA_A-nodosum_M_contig960.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=285bp|location=Sequence derived from alignment at A-nodosum_M_contig960:23750..24650+ (Ascophyllum nodosum dioecious)
ATGATTTATAACAAGACCAAGTTGGCAGCCTTTATCGCCCTGCTGGCAAC
ATCATTTGCTGTGGCTGATGCGGCCAGCGTTGACGCTGGGGAAGTGGTTA
CTGTAACCATCGAAGCGCCCCTCTTCGACACCCGCCTTAGTCCCGACGGT
GGCTGCGATCCAGCTGGCTGCTCGGGTGATTTAACAAGGGATGGAGATAT
CACGACGCAAGACTCCCGATGGTCTTGTAAGCCCGAGCTCGGCAGCGCTG
GTTCGACATGCTCTATCATCTACAACCTGTCTGAC
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