mRNA_A-nodosum_M_contig96.54.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig96.54.1
Unique NamemRNA_A-nodosum_M_contig96.54.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig96.54.1 vs. uniprot
Match: D8LFE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE4_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 8.600e-42
Identity = 126/178 (70.79%), Postives = 138/178 (77.53%), Query Frame = 1 
Query:  571 MPIDTELHKAAHNGDLGKVKHLLEEGEIEVNAPGAAERRALHRAAGGNHVEIMTYLLDKGAPVNQADKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRTLMEKATATGKLDDLCNTKDVAGKXXXXXXXXXXXXXXXSLLKELGDPNAKSEGCVVS 1104
            MP DTELHKAAHNGDLGKVK L+E+GEI VN PGAAERRALHRAAGGNHVEIM YL++KGAPV+Q DK  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         VR+LMEKATA G L+++CN +D  GK               SLLKELGDPNA+S  C +S
Sbjct:    1 MPTDTELHKAAHNGDLGKVKQLVEDGEIAVNEPGAAERRALHRAAGGNHVEIMNYLMEKGAPVDQTDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACEGGRVDVVRSLMEKATALGVLEEMCNKQDAGGKTPFDMAAAGQHKATCSLLKELGDPNAQSAACTIS 178
[Close]
BLAST of mRNA_A-nodosum_M_contig96.54.1 vs. uniprot
Match: A0A6H5JSR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR0_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.680e-29
Identity = 57/68 (83.82%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:  571 MPIDTELHKAAHNGDLGKVKHLLEEGEIEVNAPGAAERRALHRAAGGNHVEIMTYLLDKGAPVNQADK 774
            MP DTELHKAAHNGDLGKVK L+E+GEI VN PGAAERRALHRAAGGNHVEIM YL++KGAPV+Q DK
Sbjct:    1 MPTDTELHKAAHNGDLGKVKQLVEDGEIAVNEPGAAERRALHRAAGGNHVEIMNYLMEKGAPVDQTDK 68
[Close]
BLAST of mRNA_A-nodosum_M_contig96.54.1 vs. uniprot
Match: A0A836CGQ7_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGQ7_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.640e-24
Identity = 131/178 (73.60%), Postives = 141/178 (79.21%), Query Frame = 1 
Query:  571 MPIDTELHKAAHNGDLGKVKHLLEEGEIEVNAPGAAERRALHRAAGGNHVEIMTYLLDKGAPVNQADKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRTLMEKATATGKLDDLCNTKDVAGKXXXXXXXXXXXXXXXSLLKELGDPNAKSEGCVVS 1104
            MP DTELHKAAHNGDL K K L E G ++VN PGAA+RRALHRAAGGNH  ++ YLL KGAP      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       ATA   L+ +CN KD   KXXXXXXXXXXXXXXX LLKE+GDPNA+S  C +S
Sbjct:    1 MPTDTELHKAAHNGDLAKCKELTEAGGVDVNEPGAADRRALHRAAGGNHTGVIEYLLSKGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAATLEAMCNEKDSNEKXXXXXXXXXXXXXXXXLLKEMGDPNAQSAACTIS 178
[Close]
BLAST of mRNA_A-nodosum_M_contig96.54.1 vs. uniprot
Match: A0A836CN67_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN67_9STRA)

HSP 1 Score: 109 bits (272), Expect = 6.690e-24
Identity = 117/178 (65.73%), Postives = 125/178 (70.22%), Query Frame = 1 
Query:  571 MPIDTELHKAAHNGDLGKVKHLLEEGEIEVNAPGAAERRALHRAAGGNHVEIMTYLLDKGAPVNQADKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRTLMEKATATGKLDDLCNTKDVAGKXXXXXXXXXXXXXXXSLLKELGDPNAKSEGCVVS 1104
            MP DTELHKAAHNGDL K K L+E G  EVN PGA++RRALHRAAGGNHV ++ YLL K         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       ATA   LD LCN KD   K                LLKE+GDPNA+S  CV+S
Sbjct:    1 MPTDTELHKAAHNGDLAKCKELIEGGGAEVNEPGASDRRALHRAAGGNHVAVIEYLLSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAASLDALCNEKDSNAKGAFDLAAEGKHQAVCKLLKEMGDPNAQSAACVIS 178
[Close]
BLAST of mRNA_A-nodosum_M_contig96.54.1 vs. uniprot
Match: A0A7S4S639_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S639_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.290e-19
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:  571 MPIDTELHKAAHNGDLGKVKHLLEEGEIEVNAPGAAERRALHRAAGGNHVEIMTYLLDKGAPVNQADK 774
            MP DT LHKA+HNGD  +V  L+E GEI+VN PGA+ERR LHRAAGGNHV+I  YLL  GA V+ AD+
Sbjct:    1 MPFDTALHKASHNGDFKQVTALIEAGEIDVNTPGASERRPLHRAAGGNHVKICEYLLSNGAGVDLADR 68
[Close]
BLAST of mRNA_A-nodosum_M_contig96.54.1 vs. uniprot
Match: D7FGW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW9_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 9.700e-18
Identity = 43/68 (63.24%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:  571 MPIDTELHKAAHNGDLGKVKHLLEEGEIEVNAPGAAERRALHRAAGGNHVEIMTYLLDKGAPVNQADK 774
            MP+DTELHK+AH GD+  V+ L+E GE+ VN  GA +R ALHRAAG NHV I+ YLL  GAPVN AD+
Sbjct:    1 MPLDTELHKSAHKGDIQSVRQLVETGEVNVNQKGAQDRTALHRAAGANHVGIIIYLLQAGAPVNTADR 68
[Close]
BLAST of mRNA_A-nodosum_M_contig96.54.1 vs. uniprot
Match: A0A024G566_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G566_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.030e-15
Identity = 39/57 (68.42%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:  571 MPIDTELHKAAHNGDLGKVKHLLEEGEIEVNAPGAAERRALHRAAGGNHVEIMTYLL 741
            MP DT LHKAAHNGD G    +LEE  + VNAPGA +RRALHRAAGGNH E+ T LL
Sbjct:    1 MPSDTPLHKAAHNGDKGACLQILEENLVNVNAPGAGDRRALHRAAGGNHAEVCTLLL 57
[Close]
BLAST of mRNA_A-nodosum_M_contig96.54.1 vs. uniprot
Match: A0A067BKJ0_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BKJ0_SAPPC)

HSP 1 Score: 82.8 bits (203), Expect = 1.020e-14
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:  571 MPIDTELHKAAHNGDLGKVKHLLEEGEIEVNAPGAAERRALHRAAGGNHVEIMT 732
            MP DT LHKAAHNGD G V  +LE+ +++VN PGAA+RRALHRAAGGNH E+ T
Sbjct:    1 MPSDTPLHKAAHNGDKGAVLQILEDPDMDVNVPGAADRRALHRAAGGNHAELCT 54
[Close]
BLAST of mRNA_A-nodosum_M_contig96.54.1 vs. uniprot
Match: F0W0S2_9STRA (Uncharacterized protein AlNc14C5G707 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W0S2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.420e-14
Identity = 40/62 (64.52%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:  556 AFGAAMPIDTELHKAAHNGDLGKVKHLLEEGEIEVNAPGAAERRALHRAAGGNHVEIMTYLL 741
            +F   MP DT LHKAAHNGD G    +LEE  + VNAPGA +RRALHRAAGGNH E+ T LL
Sbjct:  102 SFTTNMPSDTPLHKAAHNGDKGACLQILEENLVNVNAPGAGDRRALHRAAGGNHAEVCTLLL 163
[Close]
BLAST of mRNA_A-nodosum_M_contig96.54.1 vs. uniprot
Match: H3H3F1_PHYRM (Uncharacterized protein n=24 Tax=Oomycota TaxID=4762 RepID=H3H3F1_PHYRM)

HSP 1 Score: 82.0 bits (201), Expect = 1.880e-14
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:  571 MPIDTELHKAAHNGDLGKVKHLLEEGEIEVNAPGAAERRALHRAAGGNHVEIMT 732
            MP DT LHKAAHNGD G    +LEE  ++VNAPGA +RRALHRAAGGNH E+ T
Sbjct:    1 MPSDTPLHKAAHNGDKGACLQILEEKSVDVNAPGAGDRRALHRAAGGNHAELCT 54
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig96.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LFE4_ECTSI8.600e-4270.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSR0_9PHAE1.680e-2983.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CGQ7_9STRA2.640e-2473.60Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A836CN67_9STRA6.690e-2465.73Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A7S4S639_9STRA3.290e-1966.18Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
D7FGW9_ECTSI9.700e-1863.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A024G566_9STRA4.030e-1568.42Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A067BKJ0_SAPPC1.020e-1468.52Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
F0W0S2_9STRA1.420e-1464.52Uncharacterized protein AlNc14C5G707 n=1 Tax=Albug... [more]
H3H3F1_PHYRM1.880e-1468.52Uncharacterized protein n=24 Tax=Oomycota TaxID=47... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig96contigA-nodosum_M_contig96:512488..516849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFE4
Preferred nameTIP1
PFAMsAnk,Ank_2,Ank_3,Ank_4,DHHC
Model size1994
Max annot lvl2759|Eukaryota
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
Hectar predicted targeting categoryother localisation
GOsGO:0000035,GO:0000902,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0008150,GO:0009653,GO:0009826,GO:0009932,GO:0009987,GO:0012505,GO:0016043,GO:0016049,GO:0031410,GO:0031982,GO:0031984,GO:0032502,GO:0032989,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048589,GO:0048856,GO:0048869,GO:0060560,GO:0071840,GO:0097708,GO:0098791
Exons4
Evalue6.71e-48
EggNOG OGsCOG5273@1|root,KOG0509@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-07_005970.1
EC2.3.1.225
Descriptionprotein-cysteine S-palmitoyltransferase activity
Cds size537
COG categoryZ
BRITEko00000,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig96.54.1prot_A-nodosum_M_contig96.54.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig96 513058..515962 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870471.727912-UTR-A-nodosum_M_contig96:512487..5130571680870471.727912-UTR-A-nodosum_M_contig96:512487..513057Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig96 512488..513057 +
1680870471.7891796-UTR-A-nodosum_M_contig96:515962..5168491680870471.7891796-UTR-A-nodosum_M_contig96:515962..516849Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig96 515963..516849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870471.7421434-CDS-A-nodosum_M_contig96:513057..5131851680870471.7421434-CDS-A-nodosum_M_contig96:513057..513185Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig96 513058..513185 +
1680870471.755109-CDS-A-nodosum_M_contig96:514348..5144961680870471.755109-CDS-A-nodosum_M_contig96:514348..514496Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig96 514349..514496 +
1680870471.7659874-CDS-A-nodosum_M_contig96:515244..5154361680870471.7659874-CDS-A-nodosum_M_contig96:515244..515436Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig96 515245..515436 +
1680870471.777545-CDS-A-nodosum_M_contig96:515893..5159621680870471.777545-CDS-A-nodosum_M_contig96:515893..515962Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig96 515894..515962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig96.54.1

>prot_A-nodosum_M_contig96.54.1 ID=prot_A-nodosum_M_contig96.54.1|Name=mRNA_A-nodosum_M_contig96.54.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=179bp
MPIDTELHKAAHNGDLGKVKHLLEEGEIEVNAPGAAERRALHRAAGGNHV
EIMTYLLDKGAPVNQADKSGRTALHWAAISGNREATDILLQKEADLFAVT
GSGSTPFFSACEGGRTDVVRTLMEKATATGKLDDLCNTKDVAGKTPFEIA
AEGKQKDVCSLLKELGDPNAKSEGCVVS*
back to top

mRNA from alignment at A-nodosum_M_contig96:512488..516849+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig96.54.1 ID=mRNA_A-nodosum_M_contig96.54.1|Name=mRNA_A-nodosum_M_contig96.54.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4362bp|location=Sequence derived from alignment at A-nodosum_M_contig96:512488..516849+ (Ascophyllum nodosum dioecious)
CGATAAGTTCGCAAAGTTTCAAAAGCAGTGAGAGATGCATGAAAAAATGC
GGGGGAACTTACAATTTGCGGCAGAACCAATACCCTTTCGAAATCCATCA
TGAAACCGCCCAAGGATGCCGAGAGAGGACTGGGGAGTTTTCGGCCTGTC
GTCGCCAGCGCAAGTCGCCGCGCCACATTTTTCTTGTGGCAAATGATTGC
CAGCTCTTTTGAGTTCAGTGCCTTGATTATGTTTATGATAGAGACAGCGG
CCGATTGAGTTAGAGTCCGGGAGGAAGTTTGCCTGGTCCCATAGCTCTCT
GAATTCTGGGTTTTCCTCGGTTCTTCGGAGGTATCCTTGTCTGCAGTGCA
CTTGTACAAGGAGAGATGGTGTGTTGATTGGGAACGCACGAGTACACAAG
GACAAGAAAAGACCGGGTGCCTTGTCATTTGCTGCAGAATTCTCGAGGCT
TTTGTCGTAAATCTTACTTTCATCTCGAGGAGAGAGGGAAGACGGTGCGG
TCCGTCTGGGGGGCTGGGCCGCCGAAAAGGTGCCGGCGTTTCTCTTCTCG
GCGGTGCGTTTGGAGCGGCAATGCCAATAGACACAGAGCTGCACAAGGCA
GCACACAACGGTGACCTGGGTAAAGTGAAGCATCTTCTAGAAGAAGGGGA
GATAGAGGTGAACGCGCCCGGTGCCGCGGAGCGACGAGCGTTGCACAGGT
GAGCTCCGCTGCCGGTGTGCGATATGGGATTCCTCGAAGGGGATTGCAGC
ATCAGAGCAATGGGAGAGCCATGGCCTAGGGTCTCGCTCTAGCGCAACTT
TGCCCCTTGAAACATAGCGAAGAAACGTCGATCACGCCCTTCCCTATGGT
ATTTAGCAACTCCCGACTACGGCAACTATTTATTTATGACTTTTTATATG
TTGGTGCACACGGTTTTTGTTTTGTTTTGTTTTTCTTTCAGAAACAACCT
ATACTAGAGGCACCAGAAAGCACTATAGCCTCAAGTCTTATCATTTTTTC
GTTTGGAAGATTAAAGTCGTCGGAACGGCACCCCAGTGATCAGTGCTTAG
ACCCTCTGCCTCATGCCTCATGGCATGATTGGAAATTTACTTGTGGTCAG
CTGCCCACTATTGAGAGAGCCATCCAACAGCGATTTGCCCCACCGACTAT
GACATGGACGAGAGATAGAAGCACGAGCAGCTGGGGATGTTGCACTGCTC
GAGAGGTACCAACCCCTACGGGATGAGTGGGGTTGGCGCGTGACTCGTCT
GACGCGTTGCCACGAACGCATTTTTGAAATCAGCGAAAACCTTTGAGAAA
AACGTTTTGCTATAGAGCTACGTAGAGAAACCAACGCAATCCTTCTAAAA
TGTAGATTTGTTTCGAATGTTTCCACTCCAAGCTTAACAACCGTGCTGAT
GAATGATAATGGTTGAAGCATGGCAGGTCCTGGAAACGCTTGTCCACTGC
GACTTCAAAGTCCTGCTTGCGATGCTTGCGATGATACCGCCTTCGGGCGA
AGGAAGTCAAGAAATATTGTTCTATGTACATGCTAAATGCCTCGTTCTAT
ACGTTATCCGTGGGGAAATGGGAAGCCAAGACACCAAAGAAAATTCTGAA
GCAAAGCGGAATCGCCAAACCAAATCGTCTTTTTTTTTGTGAAACATGTG
CTGTAAGAGCCAAAGCGTAAAGGAGGTAACTTTTCTTGACATACGCTTGC
GCCGATCGAGAAAAGGCATACGGCAGCACAGAACTCAAAAGCATGCAGAG
ACGTGCCCTTGTAGCGTAGCCTCTACATGGGCCTTCTCGTTAAACAGTCC
ATCCGATCTGGTGCAGCCTCGCCCACGGTGATCCTGTCGTTGATCCATGG
TGATCCTTCAGGGCAGCAGGGGGAAATCACGTGGAGATCATGACCTATTT
GCTAGACAAGGGCGCGCCCGTGAATCAAGCGGATAAGAGCGGTAGGACGG
CGTTACATTGGGCAGCCATCAGCGGAAACAGAGAGGCAACCGACATACTC
CTTCAAAAGGTGCAAAACGCCTTCAATAGGATCAAAACGTTATTTCGATC
TCGCGCTTGGTTTCTGACTTTCGATCGTCTCTTCCTTGCCCCCCCCCCTG
TTTGGTGTAGCATAAAATTTGGCTCAACAAAACCTTAGCTCGGGGCAAAC
TAACTTTGATGTTTAGTAGTGAGCGTACGGCCATAGTTTATGCCCGTAGA
GAGTCAGGGCATGGATGAATCGAGTCGTCTCTCCCCCCGAAAGTACCAAA
AAGGGTGAGTTGAACGCCGGTGGATTTTGTCGCATCGAACGTTACTCTCT
CGAGTATAGAGCAGCCGGGAGATTTGAGGCAAGTCGACGCCGCACGCGAA
TTCTGCTTTCACGCGAGTTGCGCGCTTGGTATTTCCCTACTGTTTTCTAG
CGCTGCGGAAAAACGTTCCCGCAAGCCCGGTAGAAAATAATTTGCAGCCA
TTTTGTGTGAGTGTGTGTGTTTTGCTGTTGATGATAGCTGTATTGTACGG
TTTCCATCGGGTCTTTGCAATATAATTGGCTTCCTCGCGGCACCGTTTCG
CGATCCAAGTGGGGTCGTCCAAGAAAACGCGCCAGAGAACACGAAAAATG
TCGGCAGCGCCGAATCAGACCCCTCTTTTACAGCACAGACATCGACGCCA
TTTTCGATAAACTGCCTCCAGTGTTCCGTCAAAACCCCCAAAACCTCTCT
GCACTCGGCGCGCTTCTTCTCTCCCCCCCCCCTCCTTTGGTTTGCTTCTT
TTCTCAGGAGGCAGATCTGTTCGCCGTCACAGGCAGCGGGTCCACACCGT
TCTTCTCCGCGTGCGAGGGGGGGCGGACGGACGTGGTTAGGACCTTGATG
GAGAAGGCTACTGCTACGGGGAAGCTGGATGACCTGTGCAACACCAAGGA
CGTGGCCGGAAAGACCCCGTTTGAGATTGCCGCAGAGGGCAAGCAAAAGG
TGACGACACAGCTTGTTGTAATATTCGATAGCGATGCCTTCGATCGGAGT
CTGTCCGTTCATTTCCCCCCAGGACACGCGCGACCAATGTCGTCAAGATA
GAGACGGTTCCGAAGTCCGGGTTGGCTCACGGTACAGAGCGGGGGACTAT
CCCTCAGCTTGGCTTGATGTTTGCAACGGCGACAGAGCAGAGTTACTCTC
ATCAGCAGTGACATATTTGCACATTGGATAAAACCGACCCGGGCTGGTGG
GTGTCCCAGCCCCGCTTTCGAGGGCCAACCATTCAAGAGTGACTTGAGCC
AACAAGAGTGTACACTGTACGTTGGCTTGAAGGGCAGCCAACCATGGTAG
GCCAAGGTATTTTCGTTGGTTCTCACTCATCCTAGCCACCCTCCGGTTCT
CCCATTCCGGCATTCGCTCATCACGTGCTCCCGCCTCCCAAATCCGCTCC
GCCCAGGACGTCTGCAGCTTGTTAAAGGAGTTAGGTGACCCAAACGCCAA
ATCCGAGGGATGCGTGGTCTCATAGCGCGATGGCACGTTCTCGGGGTTGG
CTCGTGATGTGGGGGTGCGGGTAACTCGTAGATAATACCAGCAGGCTTTT
TTTCTGGCGAGAGAACTGGCCCTCCGTATGTCCATATATTTATCGTAGTA
TTAATAGCCGTTGAGGAGCACGAGGAAGTTCAGGGGCTTCCGACCACGAC
TTGTCGTTGCTCTTAGGGTGCAAAATGTGTTTTTTTAATCGTACGTTGGA
ACGCGCCTGGTATGCCATTCTGTACACCTGTGACGCGCTTCCCACTAGGA
AGGGTGTCTCCTGTTTATCATCATAAGCACTATTAATGGGAAAGAAAGCG
CTCGAGGCTGCCTCATGGTTGAGTCAAGACTGCCCTGCTTTCGACGTCAC
GGAACCTGTTCGATTCGGTTTGTTTTTGAGTGTATTTCGTTATTTGGCTG
CAGGTATCTAATTAGGTTCATATAGTGGACACTGTTGCGGTCAAAGCGGG
TTTCGAATCGATACTGTAGCTGCACCGTACAGGTACTCTCTTTTTACCGA
TCACGTTTTTTTGTTGTTGATTTTTTTTAATTCGACAGCAAAATACGTAC
CGGTATCAAATTTCGCGGGCTTGGGTCTATACATAACATGAGTATCAAAT
TGGGTCGAAACGAAACCCATCCCGGGGGGTTTCCGGTAAAGTTTGAATGG
CGGACTTGCCGACCGTTTCACTGGCGTGCCGAGGCATTGACCTTTTGCGC
CACTCGCAGATCGGTTGCAGCGCACCCGAGTATATACGCCACGCCACCAG
AACTCCTCCGAGAATGGCGCAACGACATTCAGTTTGTTAAATAGAAGTCC
TAAACGAGGGGTGACAGCAACAGTTTTCTAGAGATCAGGGAGCGCTAACG
AAGTTTTTGTCG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig96:512488..516849+

>mRNA_A-nodosum_M_contig96.54.1 ID=mRNA_A-nodosum_M_contig96.54.1|Name=mRNA_A-nodosum_M_contig96.54.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=537bp|location=Sequence derived from alignment at A-nodosum_M_contig96:512488..516849+ (Ascophyllum nodosum dioecious)
ATGCCAATAGACACAGAGCTGCACAAGGCAGCACACAACGGTGACCTGGG
TAAAGTGAAGCATCTTCTAGAAGAAGGGGAGATAGAGGTGAACGCGCCCG
GTGCCGCGGAGCGACGAGCGTTGCACAGGGCAGCAGGGGGAAATCACGTG
GAGATCATGACCTATTTGCTAGACAAGGGCGCGCCCGTGAATCAAGCGGA
TAAGAGCGGTAGGACGGCGTTACATTGGGCAGCCATCAGCGGAAACAGAG
AGGCAACCGACATACTCCTTCAAAAGGAGGCAGATCTGTTCGCCGTCACA
GGCAGCGGGTCCACACCGTTCTTCTCCGCGTGCGAGGGGGGGCGGACGGA
CGTGGTTAGGACCTTGATGGAGAAGGCTACTGCTACGGGGAAGCTGGATG
ACCTGTGCAACACCAAGGACGTGGCCGGAAAGACCCCGTTTGAGATTGCC
GCAGAGGGCAAGCAAAAGGACGTCTGCAGCTTGTTAAAGGAGTTAGGTGA
CCCAAACGCCAAATCCGAGGGATGCGTGGTCTCATAG
back to top