mRNA_A-nodosum_M_contig96.48.2 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig96.48.2 vs. uniprot
Match: D8LFF1_ECTSI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFF1_ECTSI) HSP 1 Score: 176 bits (447), Expect = 3.290e-50 Identity = 84/104 (80.77%), Postives = 93/104 (89.42%), Query Frame = 2
Query: 431 FDEGSRCEPGGARATALVRDAQKKMDKYVHVDRYIRPYMPSGSSFMRNPPPPLEACYPLGIPDSVLEEFKSIPKEVEVDMSKPEDGRMSRAGQVLVDLATKRVY 742
FDEGS+C P ARA AL+R A K +D++VHVDRYIRPYMPSGSSFMRNPPPPLEACYPLGIPD VL EFK +P EVEVDMS+PE+GRMS+AGQVLVDLATKRVY
Sbjct: 61 FDEGSKCGPDSARAKALMRGAYKMIDEHVHVDRYIRPYMPSGSSFMRNPPPPLEACYPLGIPDEVLAEFKGVPMEVEVDMSRPEEGRMSKAGQVLVDLATKRVY 164
BLAST of mRNA_A-nodosum_M_contig96.48.2 vs. uniprot
Match: A0A8K1CT02_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CT02_PYTOL) HSP 1 Score: 75.1 bits (183), Expect = 1.970e-12 Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = 2
Query: 428 QFDEGSRCEPGGARATALVRDAQKKMDKYVHVDRYIRPYMPSGSSFMRNPPPPLEACYPLGIPDSVLEEFKSIPKEVEVDMS 673
+F++ EP A LVR+A++K++KY H DRY+ YMP G+ FMRN P PL+ C+P GIP+ EE + + + +DM+
Sbjct: 62 EFEQNKHLEPNSGLAKRLVREAEEKLEKYTHPDRYVYNYMPGGTRFMRNAPIPLDVCFPDGIPEG--EEVSPL-EAINIDMT 140
BLAST of mRNA_A-nodosum_M_contig96.48.2 vs. uniprot
Match: A0A2D4C2N7_PYTIN (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2N7_PYTIN) HSP 1 Score: 72.8 bits (177), Expect = 1.300e-11 Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 2
Query: 428 QFDEGSRCEPGGARATALVRDAQKKMDKYVHVDRYIRPYMPSGSSFMRNPPPPLEACYPLGIPDSVLEEFKSIPKEVEV 664
QFD +P LVR+A++K++KY H DRY+ YMP G+ FMRNPP PL+ C+P G +IP++VEV
Sbjct: 62 QFDSHKALDPNSGLVKRLVREAEEKLEKYTHPDRYVFNYMPGGTRFMRNPPIPLDVCFPDG----------NIPEDVEV 130
BLAST of mRNA_A-nodosum_M_contig96.48.2 vs. uniprot
Match: F0WM63_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WM63_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 9.770e-11 Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 2
Query: 428 QFDEGSRCEPGGARATALVRDAQKKMDKYVHVDRYIRPYMPSGSSFMRNPPPPLEACYPLGIPDSV 625
QFD P +A +++A +K+ KY H DRY+ YMP G+ FMRN P PLE C+P G+P+ V
Sbjct: 56 QFDANRHLAPESDQAKFAIKEANEKLKKYTHPDRYVFNYMPGGTKFMRNAPLPLEVCFPNGVPEDV 121
BLAST of mRNA_A-nodosum_M_contig96.48.2 vs. uniprot
Match: W4G4K6_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G4K6_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 1.520e-10 Identity = 43/106 (40.57%), Postives = 61/106 (57.55%), Query Frame = 2
Query: 428 QFDEGSRCEPGGARATALVRDAQKKMDKYVHVDRYIRPYMPSGSSFMRNPPPPLEACYPLGI-PDSVLEEFKSIPKEVEVDMSKPEDGRMSRAGQVLVDLATKRVY 742
QF+E + G A+ L+R+A +++KY H D Y+ +MP GS FMRNPP PLE C+P GI PD V E + K + +D S + + + LVD +TK Y
Sbjct: 60 QFNEHKHTDIGAAQR--LLREATAELEKYTHPDPYVVVHMPGGSKFMRNPPLPLEVCFPDGIIPDDV--EVSPV-KAINIDTSPYREDDLKQTA--LVDFSTKTAY 158
BLAST of mRNA_A-nodosum_M_contig96.48.2 vs. uniprot
Match: A0A7S2W4S4_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W4S4_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 2.590e-10 Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 2
Query: 428 QFDEGSRCEPGGARATALVRDAQKKMDKYVHVDRYIRPYMPSGSSFMRNPPPPLEACYPLGIPDSVLEEFKSIPKEVEVDMSKPEDGRMSRAGQVLVDLATKRV 739
+FD C+P A+A L+++A+K++ Y H D Y +MP G+ FMRNPP P+E C+P G + + I ++ +SK E G+ S G VL+D K +
Sbjct: 56 RFDAERGCQP--AKAVRLIKEAKKELHYYTHPDPYCVAFMPGGTLFMRNPPIPMEVCFPDG---DLPSDAPKITFNPDMSVSKKETGK-SAVGSVLIDFTKKNM 153
BLAST of mRNA_A-nodosum_M_contig96.48.2 vs. uniprot
Match: A0A024UBI6_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UBI6_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 2.830e-10 Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = 2
Query: 428 QFDEGSRCEPGGARATALVRDAQKKMDKYVHVDRYIRPYMPSGSSFMRNPPPPLEACYPLGI-PDSVLEEFKSIPKEVEVDMSKPEDGRMSRAGQVLVDLATKRVY 742
QFD+ + A A L+R+A +++KY H D Y+ +MP GS FMRNPP PLE C+P GI PD V E + K + +D + + + VLVD TK Y
Sbjct: 60 QFDDNKHTDL--AVAQRLIREANAQLEKYTHPDPYVVVHMPGGSKFMRNPPLPLEVCFPDGIIPDDV--EVSPV-KAINIDTTPYREDELKET--VLVDFTTKTSY 158
BLAST of mRNA_A-nodosum_M_contig96.48.2 vs. uniprot
Match: A0A1V9ZGE2_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZGE2_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 2.830e-10 Identity = 41/92 (44.57%), Postives = 53/92 (57.61%), Query Frame = 2
Query: 470 ATALVRDAQKKMDKYVHVDRYIRPYMPSGSSFMRNPPPPLEACYPLGI-PDSVLEEFKSIPKEVEVDMSKPEDGRMSRAGQVLVDLATKRVY 742
A L+RDAQ K++ Y H D Y+ +MP GS FMRNPP PLE C+P GI PD V E + K + +D + + + VLVD TK Y
Sbjct: 72 AERLIRDAQAKLNDYTHPDPYVVVHMPGGSKFMRNPPLPLEVCFPDGIIPDDV--EVSPL-KAINIDTTPYREDELKET--VLVDFTTKSSY 158
BLAST of mRNA_A-nodosum_M_contig96.48.2 vs. uniprot
Match: A0A7S2KZH1_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KZH1_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 3.530e-10 Identity = 36/102 (35.29%), Postives = 57/102 (55.88%), Query Frame = 2
Query: 428 QFDEGSRCEPGGARATALVRDAQKKMDKYVHVDRYIRPYMPSGSSFMRNPPPPLEACYPLGIPDSVLEEFKSIPKEVEVDMSKPEDGRMSRAGQVLVDLATK 733
+FD C P +A +R+ ++++ +Y H D Y P+MP GS FMRNPP P++ C+P G + + + ++ + K E G+ S GQVLVD +K
Sbjct: 56 RFDANRNCAPD--KANRFLREGKEELQEYTHPDPYRIPFMPGGSMFMRNPPLPMDVCFPDG---DIPADAPKVTLNPDMSICKEETGK-SAVGQVLVDFTSK 151
BLAST of mRNA_A-nodosum_M_contig96.48.2 vs. uniprot
Match: A0A7R9W6G1_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W6G1_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 8.940e-10 Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = 2
Query: 428 QFDEGSRCEPGGARATALVRDAQKKMDKYVHVDRYIRPYMPSGSSFMRNPPPPLEACYPLGIPDSVLEEFKSIPKEVEVDMSKPEDGRMSRAGQVLVDLATKRV 739
+FD C P A A L+++ ++++ +Y H D Y PYMP G+ FMRNPP PLE C+P G + + + ++ + K E G+ S G VLVD K +
Sbjct: 56 RFDANRGCTP--ANAARLIKEGKEELLEYTHPDPYCVPYMPGGTLFMRNPPLPLEVCFPDG---NYPPDAPKVTLNPDMTVCKEETGK-SAVGSVLVDFTKKNM 153 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig96.48.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig96.48.2 >prot_A-nodosum_M_contig96.48.2 ID=prot_A-nodosum_M_contig96.48.2|Name=mRNA_A-nodosum_M_contig96.48.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=184bp MQSVGVKQRAGQACRFSGDGRGVVNRTCVEWTLAQGACSLGARRCTSDFFback to top mRNA from alignment at A-nodosum_M_contig96:456662..458727+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig96.48.2 ID=mRNA_A-nodosum_M_contig96.48.2|Name=mRNA_A-nodosum_M_contig96.48.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2066bp|location=Sequence derived from alignment at A-nodosum_M_contig96:456662..458727+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig96:456662..458727+ >mRNA_A-nodosum_M_contig96.48.2 ID=mRNA_A-nodosum_M_contig96.48.2|Name=mRNA_A-nodosum_M_contig96.48.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at A-nodosum_M_contig96:456662..458727+ (Ascophyllum nodosum dioecious)back to top |