mRNA_A-nodosum_M_contig96.32.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig96.32.1
Unique NamemRNA_A-nodosum_M_contig96.32.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig96.32.1 vs. uniprot
Match: D8LFF2_ECTSI (Ribosomal_L16 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFF2_ECTSI)

HSP 1 Score: 409 bits (1052), Expect = 9.420e-140
Identity = 202/211 (95.73%), Postives = 205/211 (97.16%), Query Frame = 2 
Query:   38 MGRRPARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDVFPMVCHLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSVKYIAQHGPLEKAIL 670
            MGRRPARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVD FPMV HLVSDEKEQLTSEALEAARVSANKYM K+AGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKP GTTARV+IGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKY REEYV+GRKEGWLQKDGNSVKYIAQHGPL KAIL
Sbjct:    1 MGRRPARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVSDEKEQLTSEALEAARVSANKYMAKFAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPQGTTARVAIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYPREEYVRGRKEGWLQKDGNSVKYIAQHGPLAKAIL 211
[Close]
BLAST of mRNA_A-nodosum_M_contig96.32.1 vs. uniprot
Match: A0A7S2Y043_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y043_9STRA)

HSP 1 Score: 362 bits (929), Expect = 9.770e-121
Identity = 172/207 (83.09%), Postives = 191/207 (92.27%), Query Frame = 2 
Query:   38 MGRRPARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDVFPMVCHLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSVKYIAQHGPLE 658
            MGRRPARCYRFQKNKPFIKSRYCRGVPDPKIRIY+VG KKA VD FP V HLVSDEKEQLTSEALEAARV+ NKY+ KYAGK+ +H+RIRAHP+HV+RINKMLSCAGADRLQTGMRHAYGKP GT+ARV+IGQ+++S+R +DNH   AVEALRRAKFKFPGRQKIL+SNKWGFTK+ REEYV+GRKEGWLQ DGNSVKYIA HGPL+
Sbjct:   29 MGRRPARCYRFQKNKPFIKSRYCRGVPDPKIRIYDVGQKKAGVDYFPCVVHLVSDEKEQLTSEALEAARVACNKYLTKYAGKEAYHIRIRAHPYHVVRINKMLSCAGADRLQTGMRHAYGKPQGTSARVAIGQVLMSVRCRDNHAEIAVEALRRAKFKFPGRQKILRSNKWGFTKWEREEYVKGRKEGWLQADGNSVKYIASHGPLK 235
[Close]
BLAST of mRNA_A-nodosum_M_contig96.32.1 vs. uniprot
Match: A0A7R9U1D6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1D6_9STRA)

HSP 1 Score: 345 bits (886), Expect = 3.560e-114
Identity = 166/212 (78.30%), Postives = 184/212 (86.79%), Query Frame = 2 
Query:   29 SSTMGRRPARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDVFPMVCHLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSVKYIAQHGPLEKA 664
            S  MGRRPARCYRFQKNKP+IKSRYCRGVPDPKIRIYE GNK+  VD FP V HLVSDEKEQLTSEALEAARV ANKYM KYAGKD FH+R+R HPFH++RINKMLSCAGADRLQTGMRHAYGKP G +ARV+IGQII+SIR  D  +  A EALRRAKFKFPGRQKIL+SNKWGFT + R EYVQGR+EGW++KDGN  KY+++HGPL  A
Sbjct:   26 SIKMGRRPARCYRFQKNKPYIKSRYCRGVPDPKIRIYECGNKRMGVDHFPYVIHLVSDEKEQLTSEALEAARVCANKYMVKYAGKDAFHLRVRCHPFHIIRINKMLSCAGADRLQTGMRHAYGKPMGVSARVAIGQIIMSIRCADKIKHLAREALRRAKFKFPGRQKILESNKWGFTPFDRSEYVQGRQEGWIEKDGNQAKYVSEHGPLAAA 237
[Close]
BLAST of mRNA_A-nodosum_M_contig96.32.1 vs. uniprot
Match: A0A835YXV3_9STRA (Ribosomal protein L10e/L16 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXV3_9STRA)

HSP 1 Score: 336 bits (862), Expect = 5.450e-111
Identity = 161/208 (77.40%), Postives = 184/208 (88.46%), Query Frame = 2 
Query:   38 MGRRPARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDVFPMVCHLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSVKYIAQHGPLEK 661
            MGRRPARC RFQKNKPFIKSRYCRGVPDPKIRI++ GNK ASVD+FP V HLVSDEKEQLTS ALEAARV+ANKY+ K+ GKD FH+RIRAHPFHV+R NKMLSCAGADRL +GMRH+YGKP  T ARVSIGQI++S+R+KD +  + +EALRRAKFKFPGRQKIL+S KWG TK+SRE+YV+GR+EGWL  DGN VKYI+QHGPL K
Sbjct:    1 MGRRPARCIRFQKNKPFIKSRYCRGVPDPKIRIFDCGNKAASVDLFPFVAHLVSDEKEQLTSNALEAARVTANKYLVKFGGKDAFHLRIRAHPFHVIRQNKMLSCAGADRLSSGMRHSYGKPTETAARVSIGQILMSVRAKDANGASCIEALRRAKFKFPGRQKILRSEKWGLTKWSREDYVRGRQEGWLVHDGNGVKYISQHGPLNK 208
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BLAST of mRNA_A-nodosum_M_contig96.32.1 vs. uniprot
Match: A0A5D6Y3Y7_9STRA (Ribosomal_L16 domain-containing protein n=4 Tax=Pythium TaxID=4797 RepID=A0A5D6Y3Y7_9STRA)

HSP 1 Score: 330 bits (847), Expect = 1.080e-108
Identity = 161/206 (78.16%), Postives = 175/206 (84.95%), Query Frame = 2 
Query:   38 MGRRPARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDVFPMVCHLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSVKYIAQHGPL 655
            MGRRPA+CYRFQ  KPFIKSR+CRGVPDPKIRIY+VGNKKASVD FP V HLVSDEKEQL+SEALEAAR++AN+Y+ KYAGKDNFHMRIR HPF VLRINKMLSCAGADRLQTGMRHAYGKP G  ARV+IGQ IIS+RSKD +    VEALRRAKFKFPGRQK+L S KWGFTKY RE Y Q R +G L  DGN  KY+  HGPL
Sbjct:    1 MGRRPAKCYRFQNKKPFIKSRFCRGVPDPKIRIYDVGNKKASVDTFPFVAHLVSDEKEQLSSEALEAARIAANRYLSKYAGKDNFHMRIRCHPFQVLRINKMLSCAGADRLQTGMRHAYGKPAGVAARVAIGQPIISVRSKDQYGAAVVEALRRAKFKFPGRQKVLGSKKWGFTKYEREVYAQMRADGSLALDGNHEKYMPNHGPL 206
[Close]
BLAST of mRNA_A-nodosum_M_contig96.32.1 vs. uniprot
Match: M4BZN7_HYAAE (Ribosomal_L16 domain-containing protein n=174 Tax=Oomycota TaxID=4762 RepID=M4BZN7_HYAAE)

HSP 1 Score: 330 bits (846), Expect = 1.280e-108
Identity = 162/207 (78.26%), Postives = 175/207 (84.54%), Query Frame = 2 
Query:   38 MGRRPARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDVFPMVCHLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSVKYIAQHGPLE 658
            MGRRPA+CYRFQ  KPFIKSRYCRGVPDPKIRIY+VGNKKASVD FP V HLVSDEKEQL+SEALEAAR++AN+Y+ KY GKDNFHMRIR HPF VLRINKMLSCAGADRLQTGMRHAYGKP G  ARVSIGQ IIS+RSKD+  P+ VEALRRAKFKFPGRQK+L S KWGFTKY RE Y + R  G L  DGN  KY   HGPL+
Sbjct:    1 MGRRPAKCYRFQNKKPFIKSRYCRGVPDPKIRIYDVGNKKASVDTFPFVAHLVSDEKEQLSSEALEAARIAANRYLTKYCGKDNFHMRIRCHPFQVLRINKMLSCAGADRLQTGMRHAYGKPAGVAARVSIGQPIISVRSKDSFGPSVVEALRRAKFKFPGRQKVLGSKKWGFTKYERELYAEMRANGSLAVDGNHEKYKPNHGPLK 207
[Close]
BLAST of mRNA_A-nodosum_M_contig96.32.1 vs. uniprot
Match: A0A6G0WLK8_9STRA (Ribosomal_L16 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WLK8_9STRA)

HSP 1 Score: 329 bits (844), Expect = 3.280e-108
Identity = 160/208 (76.92%), Postives = 176/208 (84.62%), Query Frame = 2 
Query:   38 MGRRPARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDVFPMVCHLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSVKYIAQHGPLEK 661
            MGRRPA+CYRFQ  KPFIKSRYCRGVPDPKIRIY++GNKKASVD FP V HLVSDEKEQL+SEALEAAR+SAN+Y+ K+ GKDNFHMRIR HPF VLRINKMLSCAGADRLQTGMRHAYGKP G  ARV+IGQ IIS+RSKD+  P  VEALRRAKFKFPGRQK+L S KWGFTKY R+ Y + R+EG L  DGN   Y   HGPL+K
Sbjct:    1 MGRRPAKCYRFQNKKPFIKSRYCRGVPDPKIRIYDIGNKKASVDAFPFVAHLVSDEKEQLSSEALEAARISANRYLTKFCGKDNFHMRIRCHPFQVLRINKMLSCAGADRLQTGMRHAYGKPTGVAARVAIGQPIISVRSKDSFGPAVVEALRRAKFKFPGRQKVLGSKKWGFTKYERDTYAKMRQEGQLDYDGNHEIYRPAHGPLDK 208
[Close]
BLAST of mRNA_A-nodosum_M_contig96.32.1 vs. uniprot
Match: F0WNC8_9STRA (60S ribosomal protein L10 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WNC8_9STRA)

HSP 1 Score: 328 bits (842), Expect = 5.140e-108
Identity = 160/207 (77.29%), Postives = 177/207 (85.51%), Query Frame = 2 
Query:   38 MGRRPARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDVFPMVCHLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSVKYIAQHGPLE 658
            MGRRPA+CYRFQ  KPFI+SRYCRGVPD KIRIY+VGNKKASVD FP V HLVSDEKEQL++EALEAAR++AN+Y+ KY GKDNFHMRIR HPF VLRINKMLSCAGADRLQTGMRHAYGKP GT ARV+IGQ IIS+R+KDN  P  VEALRRAKFKFPGRQK+L S KWGFTKY REEY + R +G L  DGN  KY+  HGPL+
Sbjct:    1 MGRRPAKCYRFQNKKPFIRSRYCRGVPDSKIRIYDVGNKKASVDAFPYVAHLVSDEKEQLSAEALEAARIAANRYLVKYCGKDNFHMRIRCHPFQVLRINKMLSCAGADRLQTGMRHAYGKPAGTAARVAIGQPIISVRTKDNFGPACVEALRRAKFKFPGRQKVLGSKKWGFTKYEREEYAKLRADGTLIVDGNHEKYMPLHGPLK 207
[Close]
BLAST of mRNA_A-nodosum_M_contig96.32.1 vs. uniprot
Match: A0A2R5GSQ0_9STRA (60S ribosomal protein L10 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GSQ0_9STRA)

HSP 1 Score: 315 bits (808), Expect = 8.000e-103
Identity = 151/207 (72.95%), Postives = 175/207 (84.54%), Query Frame = 2 
Query:   38 MGRRPARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDVFPMVCHLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSVKYIAQHGPLE 658
            M RRPARCYR+ KNKP+IKSRY RGVP+PK++IY+VG KKA VDVFP VCH+ SDE+EQ++SEALEAAR++ NKY+ K AGKD FHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKP G  ARV IGQI+IS+R+K    P A+EALRR+K KFPGRQKI+ S KWGFTKY   EYV+ RKEG+L  DGN  KY+ +HGPL+
Sbjct:    1 MARRPARCYRYCKNKPYIKSRYLRGVPEPKLKIYDVGAKKAGVDVFPAVCHMFSDEREQISSEALEAARIACNKYLVKNAGKDAFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPAGVVARVKIGQILISVRTKKQTLPVAMEALRRSKMKFPGRQKIVASKKWGFTKYDTAEYVRMRKEGFLIPDGNQAKYVPRHGPLK 207
[Close]
BLAST of mRNA_A-nodosum_M_contig96.32.1 vs. uniprot
Match: A0A7S0Q982_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q982_9EUKA)

HSP 1 Score: 315 bits (806), Expect = 2.520e-102
Identity = 150/210 (71.43%), Postives = 179/210 (85.24%), Query Frame = 2 
Query:   32 STMGRRPARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDVFPMVCHLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSVKYIAQHGPLEK 661
            S MGRRPARC RFQKNKP+IKSR+CRGVPD KIRIY+ G KK +VDVFP V HLVSDEKEQLT+ ALEAARV+ NKY+ K  GK+ +H+R RAHP+HV+R NKMLSCAGADRL +GMRH+YGKP    AR+SIGQII+S+RSKD +    +EALRRAKFKFPGRQKI++SNKWGFTK+ RE+YV+GRKEGW++ DG SVKYIA+HG + +
Sbjct:    8 SKMGRRPARCVRFQKNKPYIKSRFCRGVPDSKIRIYDCGAKKTNVDVFPFVAHLVSDEKEQLTACALEAARVACNKYLVKNTGKEGYHIRTRAHPYHVIRQNKMLSCAGADRLSSGMRHSYGKPMEMAARISIGQIIVSVRSKDVNANHVIEALRRAKFKFPGRQKIMKSNKWGFTKFDREDYVKGRKEGWIRPDGCSVKYIAEHGRISE 217
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig96.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFF2_ECTSI9.420e-14095.73Ribosomal_L16 domain-containing protein n=2 Tax=Ec... [more]
A0A7S2Y043_9STRA9.770e-12183.09Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9U1D6_9STRA3.560e-11478.30Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A835YXV3_9STRA5.450e-11177.40Ribosomal protein L10e/L16 n=2 Tax=Tribonema minus... [more]
A0A5D6Y3Y7_9STRA1.080e-10878.16Ribosomal_L16 domain-containing protein n=4 Tax=Py... [more]
M4BZN7_HYAAE1.280e-10878.26Ribosomal_L16 domain-containing protein n=174 Tax=... [more]
A0A6G0WLK8_9STRA3.280e-10876.92Ribosomal_L16 domain-containing protein n=1 Tax=Ap... [more]
F0WNC8_9STRA5.140e-10877.2960S ribosomal protein L10 putative n=1 Tax=Albugo ... [more]
A0A2R5GSQ0_9STRA8.000e-10372.9560S ribosomal protein L10 n=1 Tax=Hondaea fermenta... [more]
A0A7S0Q982_9EUKA2.520e-10271.43Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig96contigA-nodosum_M_contig96:368821..374653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFF2
Preferred nameRPL10L
PFAMsRibosomal_L16
Model size1489
Max annot lvl2759|Eukaryota
KEGG koko:K02866
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000027,GO:0002181,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006412,GO:0006415,GO:0006417,GO:0006518,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009507,GO:0009526,GO:0009536,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009790,GO:0009889,GO:0009941,GO:0009987,GO:0010224,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0012505,GO:0015934,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0019953,GO:0022411,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030867,GO:0031090,GO:0031323,GO:0031326,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0032984,GO:0032991,GO:0034248,GO:0034622,GO:0034641,GO:0034644,GO:0034645,GO:0036477,GO:0042175,GO:0042254,GO:0042255,GO:0042273,GO:0042788,GO:0043025,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045182,GO:0048232,GO:0048513,GO:0048568,GO:0048609,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060322,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071214,GO:0071478,GO:0071482,GO:0071493,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:0097458,GO:0098542,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098805,GO:0098827,GO:0104004,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990403,GO:1990904,GO:2000112
Exons6
Evalue9.1e-146
EggNOG OGsCOG0197@1|root,KOG0857@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L10e/L16
Ec32 orthologEc-07_006050.1
Descriptionstructural constituent of ribosome
Cds size636
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig96.32.1prot_A-nodosum_M_contig96.32.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig96 368858..373837 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870469.5541456-UTR-A-nodosum_M_contig96:368820..3688571680870469.5541456-UTR-A-nodosum_M_contig96:368820..368857Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig96 368821..368857 +
1680870469.646404-UTR-A-nodosum_M_contig96:373837..3746531680870469.646404-UTR-A-nodosum_M_contig96:373837..374653Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig96 373838..374653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870469.5678518-CDS-A-nodosum_M_contig96:368857..3688671680870469.5678518-CDS-A-nodosum_M_contig96:368857..368867Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig96 368858..368867 +
1680870469.5799325-CDS-A-nodosum_M_contig96:369550..3696961680870469.5799325-CDS-A-nodosum_M_contig96:369550..369696Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig96 369551..369696 +
1680870469.596157-CDS-A-nodosum_M_contig96:371299..3714791680870469.596157-CDS-A-nodosum_M_contig96:371299..371479Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig96 371300..371479 +
1680870469.612028-CDS-A-nodosum_M_contig96:372013..3720761680870469.612028-CDS-A-nodosum_M_contig96:372013..372076Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig96 372014..372076 +
1680870469.6238074-CDS-A-nodosum_M_contig96:373059..3731971680870469.6238074-CDS-A-nodosum_M_contig96:373059..373197Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig96 373060..373197 +
1680870469.636409-CDS-A-nodosum_M_contig96:373738..3738371680870469.636409-CDS-A-nodosum_M_contig96:373738..373837Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig96 373739..373837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig96.32.1

>prot_A-nodosum_M_contig96.32.1 ID=prot_A-nodosum_M_contig96.32.1|Name=mRNA_A-nodosum_M_contig96.32.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=212bp
MGRRPARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDVFPMVC
HLVSDEKEQLTSEALEAARVSANKYMGKYAGKDNFHMRIRAHPFHVLRIN
KMLSCAGADRLQTGMRHAYGKPHGTTARVSIGQIIISIRSKDNHRPTAVE
ALRRAKFKFPGRQKILQSNKWGFTKYSREEYVQGRKEGWLQKDGNSVKYI
AQHGPLEKAIL*
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mRNA from alignment at A-nodosum_M_contig96:368821..374653+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig96.32.1 ID=mRNA_A-nodosum_M_contig96.32.1|Name=mRNA_A-nodosum_M_contig96.32.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5833bp|location=Sequence derived from alignment at A-nodosum_M_contig96:368821..374653+ (Ascophyllum nodosum dioecious)
GGCTTCTAGGGCAAGACTCCCACCTCCTTCGTCAACGATGGGGCGCCGTG
AGTACTGTTGTGCCAAGAATGACCTCGATGAGTTGTGTGCGTGTTTGTTC
GTTCATGTCTGATTGATGTTGGAGGGAAATAACGGACAAGCAAGTAGACC
AAAGGACGAAACATCCCGGCGAGCTCAATGGCTGTGATGGAGTCTAGGTC
ATGGTTCCCCAGGTTATTTCGATTGCCTGAGGCTTCTTGGCCACACCCCA
CTCGTCGGAATGTAAAGAGAAAGCTAACAACTCTTTTTGGAGTACCTACA
GATCGATGTTATTCCCGAGGCAGAATGTGCTGTTGCTGTGTCTATGCACG
TCGAGTTGGCAAAGCAATCGAAATCGAATGCATGACCGCTGGCACACCGC
CCATCTTACAGTCCAAGTTAAAGACGATCACAGCTCGACGTCCATATCGC
CGAGTTTCTTGCTAGAGAACCGAGACAGCCTTTCGTCCGTACAAGGCAAC
TTCCTTACTGTAAAGCCCTTCGTGTTCCTTCCACTGTGAATATGTTCCTG
TCGTCGACCCGCCGTGATGATCGATAACGTCACGCCTCCCTTCGTCTTTT
GCTTTCCGTGTTTCGATGTTGGGATATTTGGGCTACCCGGGGTATTAACT
CAAAACTCTGCACCGGTACTACTGCTGCTGTGCCTTGGAAATGGATGGAC
CTTGGACCGGAACTTGGGGGCCAACTACAGGACCGGCTCGTTGCTACCGC
TTCCAAAAGAACAAGCCCTTTATCAAGTCGCGTTACTGCCGCGGTGTACC
CGACCCGAAAATCCGCATTTATGAGGTCGGGAACAAGAAGGCCTCTGTGG
ACGTCTTCCCTATGGTCTGTCACTTGGTGAGAGAGAGATCCGAAGTTGTT
GTTGTCAGTACGATTGATTCCTTATTATTATACTAATAAGTTGTGGAAAT
GCCAAATCGAGGTTGGGTTTGCAGCGACAGGGGATGACCACATTGCTGAT
GGACTACCACGTGTATTCCTTAGTTTTACTGGCCACTGTAAGGCTTGGGA
GTTTCATCTGGAGATCCGCGAGAACGTAGGCGTCCTCCTGACAATTTTTA
CATAGTAGGTACTTCTACTCTTTTCAAGTTATCAGTCAACTTAGCGTGGT
TACGAACTCCGCGTAATGCGGAGTCGACGCTTGTGGTCTCGAAGGAGCCG
CCCCATCGCTCCCCGGACCACGCCTGGGATACTTCATGCTATGCATGTCG
GGCATGACAGCTTTCCACGACCCAAACGAGATACTGCTGTATCAGATTTA
TCCATAGGTTCTTACACCAGGTATTGTAAACGGTTTCTGTTGTAACTTCC
TACCTCCCCCCCAGCCCATGCCCCTTAAAAACAATGAATGAGGGGATAAA
TATTAAATATAAGATTTCAGATCTCTGCCGGTGAGAGTAAATTAAACAAT
CCTACCTACTTTTTTACATTACTATAATCATATTAATAGTGATACAACGT
TACCAATCCCGCCAGGGATCAAACCATCTCTCCGCGGTCGGTTTATGGCC
CATTTTTCCAATTGTGCTCAATACGGAGTATCAGTTACTTTAAGAGCCTC
TAGTGCAAAGTCGCGAGTTCGATTCTTGACAGGAGTAGTTTCAAATGCTG
GCTTTCGTAGCTGAAAGCGTGAAAGCGTAAGGAGGTAAAATCCAACCATT
ACAGTACAGTACCATCGGTTGACGAGGTGTATTAGTCTAGTCTAATCATC
CTGCTGTCACAAAAGTAACACGTAGTGTGAAATACAAACACGTGTTGAAT
AGATTACACGGTAAAAAATTCCTAATAAAATGGGGACTTGTTGTAAAACC
AAAATGTACCACTCTTACCAAATATAACATCACAACGTCCCTTGTGTTCT
AGACTAAAAGCTCCTATTGTTATATGATTCGATGACATTATCGTACATTA
TTACTACAATAGCCTATTTCATTATCTACTACGGTACATGGTTCATGTTT
TTTTTGTGTCCCTGCATGGCGATTAATGTAAGTGTACAGTATAACTGTGG
ATTTCTCTCCGAAATTATACTGTTGACGCTATGCTACAACATTGGGGAAG
CCAACAGGTTAGGTTTTCAATCCCACACCTACCTCGTAAACATTTTGACA
TTTTTTCCCCTGACTGGGGTCGTGGATGCTCAGAAGGTCTAGGATTTTTC
TTTAAATTGTAGTAGACGACAACTTGACAGCTCGTTTTGCAATTACGGCA
ATATTTTGCTGTAGGTGTAGTGCCAGGTCGAGGCTTGCACTGTACAGCAT
AATACTACCGGTATTATAGTACCTGGTACTTGCTAGCAAAGGAGTCAGTT
GGTTTTGATCCATAAAGAGCGAGGGCTTCAATTTCAAACCGCCAGAAATA
CATTCCTTCCAAACCTCAAGATCTCATATAGACTTTTCAACCTTGTTCCC
TCAACTCACGCATGGGTATATATCTACAGGTGTCAGACGAGAAGGAGCAG
CTGACGTCGGAGGCGTTGGAAGCCGCTCGCGTGTCCGCGAACAAGTACAT
GGGCAAGTACGCCGGGAAGGACAACTTCCACATGCGCATCCGTGCCCACC
CGTTCCACGTGCTCCGCATCAACAAGATGCTTTCGTGCGCCGGTGCCGAT
AGGCTGCAGGTGAACGCTCCGCACAGCAGATCGATGGCGACTTGCCGCGG
GCCTCAAAATAGCGCGCCAGCTTTGACCTTCCATCTTTCAATACTTGATA
CAAATTGTTTCACGAAGCCATACCAGCAAGGGCTATAGAGCTACTGCTAC
ACTCTTAAAATAGCGTTTGCTTGTTTGATACTGTAGCCCTATTTTGGCTC
ATTGGTGTGGATGACCTGAAGAGGGACCCGTTGTATATGGTTGTGAAAAC
ACATTATTCGAAGGCGCATGCATAACCCCCCTTGTTAAAGCCTCCATCTC
TCTATAATACTGCTGTAATGCTCGAAAAGTACCTCACGTGATGGTGGAAG
CTTGGCCCTCGTTATCCTTTTTCCCGTATACTTTCGAGCTTACGTGAGGC
ATTACTTGCATCGCATTCATTTGCATGCTTCCAATTTGCGATAATAATAC
GAGTACTACGTACCATACTTTTTTTTCTGACCGTGTTTCGCTGCTGGCTG
TATTTTTTTGTTGTTGCTCGTCAAACACATGAAACCCTATCAGACCGGCA
TGCGGCACGCGTACGGCAAGCCTCACGGGACCACGGCCCGTGTTTCCATC
GGACAGGTTAGCATGAGATGAATCCCTCCCTCCCTCCCTCCCATTGCTTT
AGAATGAAAAGTACCATATTAATAGTGACTCTACTTGGCACTGGATTGTT
TCATTACATTTGGTTTTTGTACCGTCAGCTGTAGCTAGCTACCTACAAAT
CTTCCCCAGGTTTTCCCCTGTTTACATGTTGATATAATAACATGTTGGGG
TATGATTGGTGGCTGTGCATGGTGATTAATATAAGTGTACAGTATAACGG
TGGGCTTCTCCCCGACGTTATACTGTTGACCCAATGTTACTACCAGTGGG
GAACCCGTTTAAATACCATGTAGTGGAACCTGTTTAAATGCCATGAAAAG
GTTTTGTATTTGCAGCCTTTGATCCCGCCTAACCGGGGGATGCTCAGAAA
GTCTAGGTGCGCTCTGATTTTTCTTTGAACAGTGTGTAGAAAAGTCTAGG
TATCATAACGGACTGTGTATTCAAACAAGCAGACAGACAATCGGTTCTAA
TAATAGTACAAGTGCAGTAGGTAGTCAAGTCTTGAGGCGTTTTCGAGGGG
AGGGGGGGGGGCCAGGCACAGAATCCGCTCCGCCCCCGTGCTCATCGAAA
AATCTTCCCCTATTGGTGCGGGGGAATATACAGTAACCCCTGAATACTGA
ATAGTGAATTGAATACAAGCACGATTTATATAATAGTATTAATAGTAGAT
TAAGTGTTTTCTATCAATGAGATGCGTTCAAATTTTTGTTTTAACTCCAT
GCTCGCGGTGTGAATTTGAAAGCCCCTGACAAATATATTTTACCAAGTCG
TTTGATTGCTTTTACGTCGTCGCTGATCAGTACGTGTTTTGTATCAAAAA
CATGGAAAGCCTCGAGAGAGAGAGACATGGTAGATAATGGTTGGTTACAG
TTTTTCCGATACTGTAGCAGAAACCGTCGCACACACCCACGTCCAACCAG
CGCGTGTCGACAACCAACCGATCGTGATGGTGTGTTCAGATTATCATCTC
CATCCGCTCCAAGGACAACCACCGCCCCACCGCGGTCGAGGCCCTCCGCC
GAGCCAAGTTTAAGTTCCCTGGTCGCCAGAAGATCCTCCAGTCCAACAAG
TGGGGCTTCACCAAGTACTCAAGGGAGGTGAGACAAATGGCAAATACAGT
AATGGCGCTCGGCACCGGTTACCGCGAAAGAGAGGGTTTACAGTAACAAT
TATAACATATTTCGATACACCAGCTAGAGGCGGGTTGAATCATATTCCGA
CACAGTAGTTAAAAGTCGCGAAGGAGCATGGCATAATAATAATGAGCTCT
GCTTTCAAAATGATCATGATGAGGAGTGAAACTATTAATATTATTTTATA
TTAAGAAAAAACACTGCTTCGGTGCCCTCGAAGGTTTTCATGCTCTTGTG
TTACTGAAAACACACCTAGCCCCGGTATCATCGCGCCTCGAATGGCTTGC
GCAATTGCCGCTGTGGTACGATATGATATGTACTGGGCAATCCATTGTTG
CAGGAAGATACTAATAATATGTAATACAAGTAAGTCGAGTCGGATCCGTC
TATCGCTGGCGGATGCGACTGAAATCGCATTATCCGACGCCTCGCGCTCC
CCTGTCTGTTTTGATTGACTCCCTCCCTCTCTATCTCTCTATCTCCCTCC
CCTTATATGTGGTGGCAGGAGTACGTGCAGGGCCGTAAGGAGGGCTGGCT
GCAAAAGGACGGAAATTCCGTCAAGTACATTGCGCAGCACGGACCCCTCG
AAAAGGCCATCCTCTAAGGCGTTAGGCATTCTCCCTTCTGCTCTCCAAGA
TTGACGACGACTCTGTCCACTAAAACGCCTCACGTAGTTTGTTGTGACCA
CTAAAGCCGCTTCTCTTGTCTGCCCTGAGGCAAAGTGACCCGTGTCCCCT
GGTGGATCTCTTTGGGGATCACGAACACTAGAGCTGCAAGCTAGTTCGGC
GTGCTTGGGGATAGGACTCTTTGAGAACGCGTGCGGTTCTGTTTCTCGAC
CAGCATGCGGGATGGATAAAGCAGTAGATTTGACGTTGGAAGGAACGGAA
GCAAAGGAGAGGAAATGTTGTTGTCTGCCCGCTACCAATGAAGCTACGGT
GTTAGAAGTGTGTGCCGGAACGCCCCTGTGCTGAGACGATCGCTTGCAGC
AAAGCCAGTTATACTCGCTCGCTGGACGCGTCTCGATGACTCTTCTTCCA
CACTCCACGTCGGTCTGTTCTGTTGCCGACTAAACGTTTGCACGGCAAAG
CTTTTTTACTTTTATTAAATAGTTGGCACTCAACAATAATACCAGCACGC
ACCTGTATTCGGATGGCAGTGATGATCGCTCTGCTACTTATACTACTATT
CACTGGAAACGCTTATTCGTAATGTTCAATAAATAAGTAGCAATATTATT
TGGTTAGAGGCATTACGCAGACTCCAGTACGCTGCCAAAAAGCGGTGTGG
GTTTTAGAGAAGAATCTGAACGCATCTAGACCTTCTGAGCATCCCCCAGG
CAGGAGGGGGAAATGAATCAAAAGGCCATGGAGCCCAGCGACAGCGGGCG
TTTCAACTGTTTTCGCAAGACAGTACGAGGTGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig96:368821..374653+

>mRNA_A-nodosum_M_contig96.32.1 ID=mRNA_A-nodosum_M_contig96.32.1|Name=mRNA_A-nodosum_M_contig96.32.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at A-nodosum_M_contig96:368821..374653+ (Ascophyllum nodosum dioecious)
ATGGGGCGCCGACCGGCTCGTTGCTACCGCTTCCAAAAGAACAAGCCCTT
TATCAAGTCGCGTTACTGCCGCGGTGTACCCGACCCGAAAATCCGCATTT
ATGAGGTCGGGAACAAGAAGGCCTCTGTGGACGTCTTCCCTATGGTCTGT
CACTTGGTGTCAGACGAGAAGGAGCAGCTGACGTCGGAGGCGTTGGAAGC
CGCTCGCGTGTCCGCGAACAAGTACATGGGCAAGTACGCCGGGAAGGACA
ACTTCCACATGCGCATCCGTGCCCACCCGTTCCACGTGCTCCGCATCAAC
AAGATGCTTTCGTGCGCCGGTGCCGATAGGCTGCAGACCGGCATGCGGCA
CGCGTACGGCAAGCCTCACGGGACCACGGCCCGTGTTTCCATCGGACAGA
TTATCATCTCCATCCGCTCCAAGGACAACCACCGCCCCACCGCGGTCGAG
GCCCTCCGCCGAGCCAAGTTTAAGTTCCCTGGTCGCCAGAAGATCCTCCA
GTCCAACAAGTGGGGCTTCACCAAGTACTCAAGGGAGGAGTACGTGCAGG
GCCGTAAGGAGGGCTGGCTGCAAAAGGACGGAAATTCCGTCAAGTACATT
GCGCAGCACGGACCCCTCGAAAAGGCCATCCTCTAA
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