mRNA_A-nodosum_M_contig958.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig958.6.1
Unique NamemRNA_A-nodosum_M_contig958.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig958.6.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.880e-17
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 1 
Query:   97 VMSAVFASKLLGATTVIGDSGASRQTFDDGTHVRNKRLPAAEEAYLIIGDGERLPVACYGDLDLGLHCENYGKPWSNVWVTLKNVAVVPGIWFDIIFFN 393
            ++S++F  +  G+T  IGDS ++     DGTHV N R P AEE +L IGDG +L   C+G LD+  HC        +V VT+K++AVVP + FD++  N
Sbjct:    1 MLSSIFPRRRPGSTVWIGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCR------EDVLVTMKDIAVVPDLAFDLVSLN 93
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig958.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE1.880e-1742.42Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig958contigA-nodosum_M_contig958:173842..174238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size397
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870462.7332487-CDS-A-nodosum_M_contig958:173842..1742381680870462.7332487-CDS-A-nodosum_M_contig958:173842..174238Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig958 173843..174238 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig958.6.1prot_A-nodosum_M_contig958.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig958 173843..174238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig958.6.1

>prot_A-nodosum_M_contig958.6.1 ID=prot_A-nodosum_M_contig958.6.1|Name=mRNA_A-nodosum_M_contig958.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=132bp
PLSSVFGGPESGPGPTPYVLQLPTAESRFFPHVMSAVFASKLLGATTVIG
DSGASRQTFDDGTHVRNKRLPAAEEAYLIIGDGERLPVACYGDLDLGLHC
ENYGKPWSNVWVTLKNVAVVPGIWFDIIFFNQ
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mRNA from alignment at A-nodosum_M_contig958:173842..174238-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig958.6.1 ID=mRNA_A-nodosum_M_contig958.6.1|Name=mRNA_A-nodosum_M_contig958.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=397bp|location=Sequence derived from alignment at A-nodosum_M_contig958:173842..174238- (Ascophyllum nodosum dioecious)
CCTCTTTCCTCCGTTTTCGGTGGCCCGGAATCGGGTCCTGGCCCCACTCC
TTATGTCCTGCAGCTCCCAACTGCCGAGTCGCGCTTCTTTCCCCACGTCA
TGTCTGCGGTTTTCGCGTCGAAACTTCTTGGCGCTACTACCGTGATCGGA
GACAGTGGCGCGTCGAGGCAAACCTTCGACGATGGCACCCACGTGAGAAA
CAAGCGTTTGCCAGCTGCGGAGGAAGCGTACCTCATCATCGGCGACGGGG
AGCGACTGCCGGTGGCGTGTTACGGGGACCTTGACCTCGGTCTCCACTGC
GAAAATTACGGAAAACCGTGGAGCAATGTTTGGGTGACGTTGAAAAACGT
TGCTGTGGTCCCCGGCATCTGGTTCGATATCATCTTCTTCAACCAGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig958:173842..174238-

>mRNA_A-nodosum_M_contig958.6.1 ID=mRNA_A-nodosum_M_contig958.6.1|Name=mRNA_A-nodosum_M_contig958.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at A-nodosum_M_contig958:173842..174238- (Ascophyllum nodosum dioecious)
CCTCTTTCCTCCGTTTTCGGTGGCCCGGAATCGGGTCCTGGCCCCACTCC
TTATGTCCTGCAGCTCCCAACTGCCGAGTCGCGCTTCTTTCCCCACGTCA
TGTCTGCGGTTTTCGCGTCGAAACTTCTTGGCGCTACTACCGTGATCGGA
GACAGTGGCGCGTCGAGGCAAACCTTCGACGATGGCACCCACGTGAGAAA
CAAGCGTTTGCCAGCTGCGGAGGAAGCGTACCTCATCATCGGCGACGGGG
AGCGACTGCCGGTGGCGTGTTACGGGGACCTTGACCTCGGTCTCCACTGC
GAAAATTACGGAAAACCGTGGAGCAATGTTTGGGTGACGTTGAAAAACGT
TGCTGTGGTCCCCGGCATCTGGTTCGATATCATCTTCTTCAACCAG
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