mRNA_A-nodosum_M_contig958.28.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig958.28.1
Unique NamemRNA_A-nodosum_M_contig958.28.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig958.28.1 vs. uniprot
Match: A0A6A4M5F5_9ERIC (Histone H4 (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4M5F5_9ERIC)

HSP 1 Score: 199 bits (507), Expect = 1.150e-60
Identity = 110/134 (82.09%), Postives = 115/134 (85.82%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*SPTS*K*GASLLTKLGVYST-PPFFEENFI 399
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG         A  + KL V +T  P   E+FI
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG---------AVEIPKLDVATTLSPPLNEHFI 125
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BLAST of mRNA_A-nodosum_M_contig958.28.1 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 197 bits (502), Expect = 3.100e-60
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
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BLAST of mRNA_A-nodosum_M_contig958.28.1 vs. uniprot
Match: A0A7R8D4C3_LEPSM (Histone H4 n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A7R8D4C3_LEPSM)

HSP 1 Score: 198 bits (504), Expect = 4.340e-60
Identity = 109/133 (81.95%), Postives = 114/133 (85.71%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*SPTS*K*GASLLTKLGVYSTPPFFEENFI 399
            M+GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG          SLL K+ V  T  F E + I
Sbjct:    1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG--------NKSLLVKVTVSQT--FLERDCI 123
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BLAST of mRNA_A-nodosum_M_contig958.28.1 vs. uniprot
Match: UPI001ABE2D7F (histone H4-like n=2 Tax=Euteleostomi TaxID=117571 RepID=UPI001ABE2D7F)

HSP 1 Score: 198 bits (504), Expect = 4.340e-60
Identity = 106/126 (84.13%), Postives = 114/126 (90.48%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*SPTS*K*GASLLTKLGVYSTPP 378
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFG  +  +    +S+LT   ++S PP
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGVNAAAA----SSVLTAQRLFSEPP 122
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BLAST of mRNA_A-nodosum_M_contig958.28.1 vs. uniprot
Match: H4_SOLLC (Histone H4 n=13 Tax=cellular organisms TaxID=131567 RepID=H4_SOLLC)

HSP 1 Score: 197 bits (501), Expect = 4.380e-60
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of mRNA_A-nodosum_M_contig958.28.1 vs. uniprot
Match: B6T0P4_MAIZE (Histone H4 n=1 Tax=Zea mays TaxID=4577 RepID=B6T0P4_MAIZE)

HSP 1 Score: 199 bits (505), Expect = 4.840e-60
Identity = 118/174 (67.82%), Postives = 124/174 (71.26%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*SPTS*K*GASLLTKLGVYSTPPFFEENFIMTCLLSSRSMVVWSTLCIAYG*VANMY*LFIQAAI*KCCAC 522
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG +      G + L+ L  Y             C L S S           G VA M  L   A +  CC C
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGQA------GRASLSSLRFY-------------CFLQSASC----------GWVAKM--LVTVALVQACCVC 143
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BLAST of mRNA_A-nodosum_M_contig958.28.1 vs. uniprot
Match: UPI0007EE9419 (LOW QUALITY PROTEIN: histone H4 n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=UPI0007EE9419)

HSP 1 Score: 197 bits (502), Expect = 5.170e-60
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*SPTS 324
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG  P S
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGGXRPAS 108
[Close]
BLAST of mRNA_A-nodosum_M_contig958.28.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 197 bits (502), Expect = 6.280e-60
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   23 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
[Close]
BLAST of mRNA_A-nodosum_M_contig958.28.1 vs. uniprot
Match: B7FX68_PHATC (Histone H4 n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FX68_PHATC)

HSP 1 Score: 196 bits (499), Expect = 8.770e-60
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQG+TLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGKTLYGFGG 103
[Close]
BLAST of mRNA_A-nodosum_M_contig958.28.1 vs. uniprot
Match: C1MUM2_MICPC (Histone H4 n=20 Tax=Eukaryota TaxID=2759 RepID=C1MUM2_MICPC)

HSP 1 Score: 196 bits (499), Expect = 8.770e-60
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 309
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig958.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A4M5F5_9ERIC1.150e-6082.09Histone H4 (Fragment) n=1 Tax=Rhododendron william... [more]
A0A024G0M5_9STRA3.100e-60100.00Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepI... [more]
A0A7R8D4C3_LEPSM4.340e-6081.95Histone H4 n=1 Tax=Lepeophtheirus salmonis TaxID=7... [more]
UPI001ABE2D7F4.340e-6084.13histone H4-like n=2 Tax=Euteleostomi TaxID=117571 ... [more]
H4_SOLLC4.380e-6099.03Histone H4 n=13 Tax=cellular organisms TaxID=13156... [more]
B6T0P4_MAIZE4.840e-6067.82Histone H4 n=1 Tax=Zea mays TaxID=4577 RepID=B6T0P... [more]
UPI0007EE94195.170e-6095.37LOW QUALITY PROTEIN: histone H4 n=1 Tax=Oryctolagu... [more]
A0A3L6V663_9STRA6.280e-60100.00Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID... [more]
B7FX68_PHATC8.770e-6099.03Histone H4 n=13 Tax=Bacillariophyta TaxID=2836 Rep... [more]
C1MUM2_MICPC8.770e-6099.03Histone H4 n=20 Tax=Eukaryota TaxID=2759 RepID=C1M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig958contigA-nodosum_M_contig958:256710..257758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008863623.1
PFAMsCENP-T_C
Model size1049
Max annot lvl2759|Eukaryota
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
Exons1
Evalue1.68e-64
EggNOG OGsCOG2036@1|root,KOG3467@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size312
COG categoryB
BRITEko00000,ko00001,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870464.2991445-UTR-A-nodosum_M_contig958:256709..2574461680870464.2991445-UTR-A-nodosum_M_contig958:256709..257446Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig958 256710..257446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870464.380927-CDS-A-nodosum_M_contig958:257446..2577581680870464.380927-CDS-A-nodosum_M_contig958:257446..257758Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig958 257447..257758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig958.28.1prot_A-nodosum_M_contig958.28.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig958 257447..257758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig958.28.1

>prot_A-nodosum_M_contig958.28.1 ID=prot_A-nodosum_M_contig958.28.1|Name=mRNA_A-nodosum_M_contig958.28.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG*
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mRNA from alignment at A-nodosum_M_contig958:256710..257758-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig958.28.1 ID=mRNA_A-nodosum_M_contig958.28.1|Name=mRNA_A-nodosum_M_contig958.28.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1049bp|location=Sequence derived from alignment at A-nodosum_M_contig958:256710..257758- (Ascophyllum nodosum dioecious)
ATGTCTGGACGAGGAAAGGGAGGAAAGGGTCTGGGTAAGGGGGGTGCCAA
GCGCCACCGCAAGGTTCTGCGTGACAACATCCAGGGCATCACCAAGCCTG
CTATTCGCCGTCTAGCCCGCCGAGGCGGTGTCAAGCGTATCTCTGGGCTC
ATTTATGAGGAGACCCGCGGAGTGCTAAAGGTGTTTCTCGAGAACGTCAT
CCGCGACTCCGTAACCTACACGGAGCACGCCCGCCGCAAGACGGTGACGG
CGATGGACGTGGTGTACGCTCTCAAGCGCCAGGGCCGTACTCTTTACGGT
TTCGGTGGCTAAAGCCCCACGTCCTAGAAGTGAGGAGCCTCGCTCTTAAC
AAAACTCGGTGTTTACTCAACACCACCCTTTTTCGAAGAAAATTTTATTA
TGACCTGTCTGCTAAGCTCTAGGAGTATGGTTGTATGGAGTACCCTATGC
ATAGCCTATGGATAAGTGGCAAACATGTACTGATTGTTCATCCAGGCAGC
AATTTGAAAGTGTTGTGCGTGCGAGTGTGTTGATTTACCGATCGGGTCCC
GAGCCAAACCCAATTGTACAGTACGCGTGGTTGCCAATCAAGTACGTTGT
CTGGTGGGCTGTAGGTTTAGCAACCCGTCTTCCGTGGGGACTTGTGTGTT
ACTCTAAGTAATGCAAACATTTTGGCTTTCTGCCAGCCACGACTTGCGTT
TGGGTATGGATGATATGCTTCTTGCACTCTGTGACCACGGGTTCGAGAGA
TCGGGCTAATGTGCCGTTAATAATAATAATAATGGATTGAGAGCTCTGTT
ATATTTTTCCTCGCTTTAACCGAACGACCCTAAAACCATATTAGACGTCG
TTGCCAATCCTCTTCTGGTAAGATTCCCAAGAACGGCAACAGGGGCCGTC
GGTAAAGGTCTGGTGTAAATCAGCCACGAGCGCATCCGGTCACTCCCTGA
ATCGTAACTATACCATGTATTTGCGTACAGAAGCACAATTCTAAGGTTTC
CGTGTCGGAGCAGTCGACGCTGCTTCTGGAGTGGTTCGGTCGGGTCCAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig958:256710..257758-

>mRNA_A-nodosum_M_contig958.28.1 ID=mRNA_A-nodosum_M_contig958.28.1|Name=mRNA_A-nodosum_M_contig958.28.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at A-nodosum_M_contig958:256710..257758- (Ascophyllum nodosum dioecious)
ATGTCTGGACGAGGAAAGGGAGGAAAGGGTCTGGGTAAGGGGGGTGCCAA
GCGCCACCGCAAGGTTCTGCGTGACAACATCCAGGGCATCACCAAGCCTG
CTATTCGCCGTCTAGCCCGCCGAGGCGGTGTCAAGCGTATCTCTGGGCTC
ATTTATGAGGAGACCCGCGGAGTGCTAAAGGTGTTTCTCGAGAACGTCAT
CCGCGACTCCGTAACCTACACGGAGCACGCCCGCCGCAAGACGGTGACGG
CGATGGACGTGGTGTACGCTCTCAAGCGCCAGGGCCGTACTCTTTACGGT
TTCGGTGGCTAA
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