mRNA_A-nodosum_M_contig9579.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9579.8.1
Unique NamemRNA_A-nodosum_M_contig9579.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9579.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9579contigA-nodosum_M_contig9579:10475..11153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size181
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870462.2654898-UTR-A-nodosum_M_contig9579:10474..104811680870462.2654898-UTR-A-nodosum_M_contig9579:10474..10481Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9579 10475..10481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870462.2762222-CDS-A-nodosum_M_contig9579:10481..105531680870462.2762222-CDS-A-nodosum_M_contig9579:10481..10553Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9579 10482..10553 +
1680870462.2880862-CDS-A-nodosum_M_contig9579:11051..111531680870462.2880862-CDS-A-nodosum_M_contig9579:11051..11153Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9579 11052..11153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9579.8.1prot_A-nodosum_M_contig9579.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9579 10482..11153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9579.8.1

>prot_A-nodosum_M_contig9579.8.1 ID=prot_A-nodosum_M_contig9579.8.1|Name=mRNA_A-nodosum_M_contig9579.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=58bp
MLKQWGGGEGESDPKGGSNSGPDQAAGPSKTLAASMTPRSKSRYKTRLGE
LETVLSGG
back to top

mRNA from alignment at A-nodosum_M_contig9579:10475..11153+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9579.8.1 ID=mRNA_A-nodosum_M_contig9579.8.1|Name=mRNA_A-nodosum_M_contig9579.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=679bp|location=Sequence derived from alignment at A-nodosum_M_contig9579:10475..11153+ (Ascophyllum nodosum dioecious)
TTAGGGGATGTTGAAACAATGGGGGGGAGGCGAAGGTGAAAGTGACCCGA
AAGGCGGGAGTAATAGCGGGCCGGATCAGGTTCGCGCTAGTGTTTTTGGT
GTATGTGTATGTGTGTATTATGTGTATTTTTTGTGTGTATTTATTAAATT
GCACATAAGCGCGCAATCCGGCCCTGTCGGGCTAAGCTTTCTAAGCCACT
CGCATTTGAAGCGCATGTGTTTGTGTGTGTGTGTGTGTATTTATTAAATT
GCACATAACCGCGCAATCCGGCCTTGTCATCCTAGTCATTCTATGCCACT
CGCATTGATCCTCCCAAGGGGGGATCAATGATACTTGTGTGTGTGTGTGT
TTGTGTGTGTGTGTGTGTGTGTGCATGTCAAGGGTTTGGAGAGTCACGCG
GCTTCGTCCCGCCCGCATGTTTCACCCCAAAATTTCTACACTCGGAACGC
CTCCCAAGCAGAGGTAGAAAACCATGTTGCGATAAGAAAAGAAAAGACCC
ATGGAAGACCAATTTAGCCAACCTGAAGCATGCTGCTGTTAACTCTGTGC
ACACTATAACATCTGTGAACGGCGCAGGCCGCAGGACCCTCAAAGACTCT
CGCCGCTTCAATGACTCCACGTTCCAAAAGCCGCTACAAAACTCGGCTGG
GAGAGCTCGAGACGGTTCTCTCTGGCGGC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig9579:10475..11153+

>mRNA_A-nodosum_M_contig9579.8.1 ID=mRNA_A-nodosum_M_contig9579.8.1|Name=mRNA_A-nodosum_M_contig9579.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=174bp|location=Sequence derived from alignment at A-nodosum_M_contig9579:10475..11153+ (Ascophyllum nodosum dioecious)
ATGTTGAAACAATGGGGGGGAGGCGAAGGTGAAAGTGACCCGAAAGGCGG
GAGTAATAGCGGGCCGGATCAGGCCGCAGGACCCTCAAAGACTCTCGCCG
CTTCAATGACTCCACGTTCCAAAAGCCGCTACAAAACTCGGCTGGGAGAG
CTCGAGACGGTTCTCTCTGGCGGC
back to top