mRNA_A-nodosum_M_contig9551.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9551.1.1
Unique NamemRNA_A-nodosum_M_contig9551.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9551.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9551contigA-nodosum_M_contig9551:18462..18653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size157
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size153
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870459.9765732-UTR-A-nodosum_M_contig9551:18461..184631680870459.9765732-UTR-A-nodosum_M_contig9551:18461..18463Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9551 18462..18463 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870459.9889-CDS-A-nodosum_M_contig9551:18463..185361680870459.9889-CDS-A-nodosum_M_contig9551:18463..18536Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9551 18464..18536 -
1680870460.071412-CDS-A-nodosum_M_contig9551:18573..186531680870460.071412-CDS-A-nodosum_M_contig9551:18573..18653Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9551 18574..18653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9551.1.1prot_A-nodosum_M_contig9551.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9551 18464..18653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9551.1.1

>prot_A-nodosum_M_contig9551.1.1 ID=prot_A-nodosum_M_contig9551.1.1|Name=mRNA_A-nodosum_M_contig9551.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=51bp
LRDCSVKASRSPRGVSAGSRLHDGTATLHEPFIRAFVDPPDGFHEKPETR
*
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mRNA from alignment at A-nodosum_M_contig9551:18462..18653-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9551.1.1 ID=mRNA_A-nodosum_M_contig9551.1.1|Name=mRNA_A-nodosum_M_contig9551.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at A-nodosum_M_contig9551:18462..18653- (Ascophyllum nodosum dioecious)
CTTCGCGACTGCTCCGTGAAGGCTTCGCGGAGCCCCCGCGGTGTCTCAGC
GGGGAGTCGCCTTCACGACGGCACCGCGACGTCTTCGCGGTGCCGTCGCG
GCGACATCATTACGGAGGCTTCATGAACCCTTCATTCGAGCCTTCGTGGA
CCCTCCAGATGGGTTCCACGAAAAACCCGAAACCCGGTAACC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9551:18462..18653-

>mRNA_A-nodosum_M_contig9551.1.1 ID=mRNA_A-nodosum_M_contig9551.1.1|Name=mRNA_A-nodosum_M_contig9551.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=153bp|location=Sequence derived from alignment at A-nodosum_M_contig9551:18462..18653- (Ascophyllum nodosum dioecious)
CTTCGCGACTGCTCCGTGAAGGCTTCGCGGAGCCCCCGCGGTGTCTCAGC
GGGGAGTCGCCTTCACGACGGCACCGCGACGCTTCATGAACCCTTCATTC
GAGCCTTCGTGGACCCTCCAGATGGGTTCCACGAAAAACCCGAAACCCGG
TAA
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