mRNA_A-nodosum_M_contig954.19.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig954.19.1
Unique NamemRNA_A-nodosum_M_contig954.19.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig954.19.1 vs. uniprot
Match: D7FVN4_ECTSI (Myo-inositol dehydrogenase myo-inositol dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVN4_ECTSI)

HSP 1 Score: 696 bits (1797), Expect = 2.380e-244
Identity = 359/470 (76.38%), Postives = 397/470 (84.47%), Query Frame = 1
Query:    1 MSLVGSLVLCLFLAVAIDAFVIHSSAPTGALRRLELKISANTGAARLSASTAPLP----LTRSSFVTSASCKSAGGIAHGGKGAALSMKIINVGVIGAGRIGIVHLEALASCANAKPIIISNPTVSKAEAAAAKYNVPYSSGDAMDVITHPEVDAVWICSPSQFHADQIKACAANGKHIFCEKPIATDVPETIEAINACKAAGVKLMTALQRRFDPNFARVKIAIADGEIGDVVQVKLTSRDPSPPPVEYVRGGGGIFKDMAVHDLDMSRFLMGSEPKRILAQGSCQIDHAIDDLQGAEAFDTANIMVEYENGRTAVIDVCRQAVYGYDQRAEALGVKGMIQTDNMYPNTARVYLKGFTGNADMPYDFFMSRYKEAYIQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGKSAEERRWVSFDEIPEVNACSTPDS-CEIIDPIEFAKHGETAKEIGEGFFKLAQEMLG 1395
            M+  GS+VL L L  + +AF+    A T ALR+   K+S      ++ +++ P+     L  SSFV+  SC +  G   G     LSMK+INVGVIGAGRIG+VHLEAL+SCANAKP+IISNPTVSKAEAAAAKYNV   S DA DVI HP+VDAVWICSPSQFHADQIKACAA GKH+FCEKPIATDVPETIEAINACK   VKLMTALQRRFDPNFARVKIAIADGE+G+V+QVKLTSRDPSPPPVEYVRGGGGIFKDMAVHDLDMSRFLMGSEP RILAQGSCQIDHAID L G EAFDTA IMVE+E+G+TAVIDVCRQA YGYDQRAEALG KGMIQTDNMYPNTARVYLKGFTGNADMPYDFFMSRYKEAYIQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGKSAEE+RWVSFDEIPE + C   D+ C+I++PIE+AKHGET  E+   FF+ A+E+LG
Sbjct:    1 MATAGSIVLSLLLVTSSNAFLTPGIARTNALRQSGSKLS------QIPSTSNPVAGLKHLEPSSFVSGVSCSALRGEGSGSSRGGLSMKVINVGVIGAGRIGLVHLEALSSCANAKPLIISNPTVSKAEAAAAKYNVAEFSSDAKDVINHPDVDAVWICSPSQFHADQIKACAAQGKHVFCEKPIATDVPETIEAINACKENNVKLMTALQRRFDPNFARVKIAIADGEVGEVIQVKLTSRDPSPPPVEYVRGGGGIFKDMAVHDLDMSRFLMGSEPTRILAQGSCQIDHAIDTLDGPEAFDTAMIMVEFESGKTAVIDVCRQAPYGYDQRAEALGKKGMIQTDNMYPNTARVYLKGFTGNADMPYDFFMSRYKEAYIQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGKSAEEKRWVSFDEIPEASVCDPTDNHCDIVNPIEYAKHGETPAELENSFFQRAKELLG 464          
BLAST of mRNA_A-nodosum_M_contig954.19.1 vs. uniprot
Match: A0A836CJ29_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ29_9STRA)

HSP 1 Score: 595 bits (1533), Expect = 5.380e-206
Identity = 294/360 (81.67%), Postives = 320/360 (88.89%), Query Frame = 1
Query:  250 MKIINVGVIGAGRIGIVHLEALASCANAKPIIISNPTVSKAEAAAAKYNVPYSSGDAMDVITHPEVDAVWICSPSQFHADQIKACAANGKHIFCEKPIATDVPETIEAINACKAAGVKLMTALQRRFDPNFARVKIAIADGEIGDVVQVKLTSRDPSPPPVEYVRGGGGIFKDMAVHDLDMSRFLMGSEPKRILAQGSCQIDHAIDDLQGAEAFDTANIMVEYENGRTAVIDVCRQAVYGYDQRAEALGVKGMIQTDNMYPNTARVYLKGFTGNADMPYDFFMSRYKEAYIQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGKSAEERRWVSFDEIPEVNACSTPDSCEIIDPIEFA 1329
            MK+INVGVIGAGRIGIVHLEALASC +AKPIIISNPTVSKA+ AAAK+NVP  + +A DVI HP VDAVWICSPSQ+HADQIKACA  GKH+FCEKPIATD+ ETIEAINAC AA VKLMTALQRRFDPNFARVK AI DG++G++VQVKL SRDPSPPP +YV+GGGGIFKDMAVHDLDMSRFLMGSEPKRILA GSC ID +I+ L GAEA+DTA I+VEYEN RTA IDVCRQA YGYDQRAEALG KGMIQTDNMYPNTAR+YL  FTGNADMPYDFFMSRYKEAY+QETLAFC  LV+D PSPCSGEDGLMALIM++AAG SAE+ RWVSFDEIPEV AC+    CEI DPIEFA
Sbjct:    1 MKVINVGVIGAGRIGIVHLEALASCPDAKPIIISNPTVSKAKDAAAKFNVPEFTSNADDVINHPNVDAVWICSPSQYHADQIKACAKAGKHVFCEKPIATDMAETIEAINACAAANVKLMTALQRRFDPNFARVKKAIEDGQVGELVQVKLCSRDPSPPPFQYVKGGGGIFKDMAVHDLDMSRFLMGSEPKRILAIGSCHIDKSIEVLPGAEAYDTATIIVEYENERTATIDVCRQAPYGYDQRAEALGTKGMIQTDNMYPNTARLYLDNFTGNADMPYDFFMSRYKEAYVQETLAFCKALVHDLPSPCSGEDGLMALIMSVAAGMSAEQGRWVSFDEIPEVQACTDATHCEIYDPIEFA 360          
BLAST of mRNA_A-nodosum_M_contig954.19.1 vs. uniprot
Match: A0A835Z5H5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5H5_9STRA)

HSP 1 Score: 589 bits (1519), Expect = 1.100e-203
Identity = 292/361 (80.89%), Postives = 317/361 (87.81%), Query Frame = 1
Query:  247 SMKIINVGVIGAGRIGIVHLEALASCANAKPIIISNPTVSKAEAAAAKYNVPYSSGDAMDVITHPEVDAVWICSPSQFHADQIKACAANGKHIFCEKPIATDVPETIEAINACKAAGVKLMTALQRRFDPNFARVKIAIADGEIGDVVQVKLTSRDPSPPPVEYVRGGGGIFKDMAVHDLDMSRFLMGSEPKRILAQGSCQIDHAIDDLQGAEAFDTANIMVEYENGRTAVIDVCRQAVYGYDQRAEALGVKGMIQTDNMYPNTARVYLKGFTGNADMPYDFFMSRYKEAYIQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGKSAEERRWVSFDEIPEVNACSTPDSCEIIDPIEFA 1329
            SMK+INVGVIGAGRIGIVHLEALASCA+AKPIIISNPTVSKA+AAA KYNVP  + +A DVI HP+VDAVWICSPS FHADQIKACA  GKH+FCEKPIATD+ ETIEAINAC AA VKLMTALQRRFDPNFARV+ AI  GE+G++VQVKL SRDPSPPP +YV+GGGGIF DMAVHDLDMSRFLMGSEPK+ILA GSC ID +I  L G EA+DTA I+VEYE GRTA IDVCRQA YGYDQRAEALG KGMI TDNMYPNTAR+YLK FTGNADMP+DFFMSRYKEAYIQETLAFC  LV D PSPCSGEDGLMALIM++AAG SAE+ RWV F EIPEV AC+ P  C+IIDPIEFA
Sbjct:   11 SMKVINVGVIGAGRIGIVHLEALASCADAKPIIISNPTVSKAQAAAEKYNVPEWTANADDVINHPDVDAVWICSPSSFHADQIKACAKAGKHVFCEKPIATDMAETIEAINACAAANVKLMTALQRRFDPNFARVRQAIEAGEVGELVQVKLCSRDPSPPPFQYVKGGGGIFCDMAVHDLDMSRFLMGSEPKKILAVGSCHIDKSIKTLPGPEAYDTATIIVEYEGGRTATIDVCRQAPYGYDQRAEALGTKGMILTDNMYPNTARLYLKDFTGNADMPFDFFMSRYKEAYIQETLAFCKALVEDLPSPCSGEDGLMALIMSVAAGMSAEQNRWVEFSEIPEVRACTDPAHCKIIDPIEFA 371          
BLAST of mRNA_A-nodosum_M_contig954.19.1 vs. uniprot
Match: A0A6V1RSK2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RSK2_HETAK)

HSP 1 Score: 576 bits (1485), Expect = 2.940e-197
Identity = 287/394 (72.84%), Postives = 328/394 (83.25%), Query Frame = 1
Query:  163 PLTRSSFVTSASCKSAGGIAHGGKGAA-LSMKIINVGVIGAGRIGIVHLEALASCANAKPIIISNPTVSKAEAAAAKYNVPYSSGDAMDVITHPEVDAVWICSPSQFHADQIKACAANGKHIFCEKPIATDVPETIEAINACKAAGVKLMTALQRRFDPNFARVKIAIADGEIGDVVQVKLTSRDPSPPPVEYVRGGGGIFKDMAVHDLDMSRFLMGSEPKRILAQGSCQIDHAIDDLQGAEAFDTANIMVEYENGRTAVIDVCRQAVYGYDQRAEALGVKGMIQTDNMYPNTARVYLKGFTGNADMPYDFFMSRYKEAYIQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGKSAEERRWVSFDEIPEVNACSTPDSCEIIDPIEFAKHGE 1341
            P+  S FV+ +S K+   +      A+ LSMK INVG+IGAGRIG+VHLEAL++C +A PIIISNPTVSKAEAAA +YNVP  +GDAM+VIT+P+VDAVWICSPSQ+HADQIKACAANGKH+FCEKP+ATDVPETIEAINACK A VKLMTALQRRFDPNFARVK AI  G++GD +QVKLTSRDPSPPP EYV+GGGGIFKDMAVHDLDMSRFLMG EP+ ILA GSC ID AI +L+G EA+DTA I+++Y+ G TA IDVCRQA YGYDQRAE LG KGM  TDNMYPNTAR+YL  +TGNADMP+DFFMSRYKEAYIQET AF DCL ND PSPC+GEDGL+ALIMAIAAGKSA E RWV F E+P V    +   CE++DP+   K GE
Sbjct:   33 PVVHSKFVSGSSLKAV--VPQASSSASPLSMKTINVGIIGAGRIGLVHLEALSACPDATPIIISNPTVSKAEAAAKQYNVPKWTGDAMEVITNPDVDAVWICSPSQYHADQIKACAANGKHVFCEKPVATDVPETIEAINACKTANVKLMTALQRRFDPNFARVKEAIVRGQVGDPIQVKLTSRDPSPPPFEYVKGGGGIFKDMAVHDLDMSRFLMGCEPEEILAVGSCMIDDAILELEGPEAYDTATIVIKYQGGATATIDVCRQAPYGYDQRAEVLGQKGMCATDNMYPNTARLYLADYTGNADMPFDFFMSRYKEAYIQETKAFVDCLANDTPSPCTGEDGLIALIMAIAAGKSAAEGRWVKFSELPVVKCDPSGQQCELVDPLTALKTGE 424          
BLAST of mRNA_A-nodosum_M_contig954.19.1 vs. uniprot
Match: A0A7S2R4A5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4A5_9STRA)

HSP 1 Score: 552 bits (1422), Expect = 5.810e-188
Identity = 271/387 (70.03%), Postives = 316/387 (81.65%), Query Frame = 1
Query:  256 IINVGVIGAGRIGIVHLEALASCANAKPIIISNPTVSKAEAAAAKYNVPYSSGDAMDVITHPEVDAVWICSPSQFHADQIKACAANGKHIFCEKPIATDVPETIEAINACKAAGVKLMTALQRRFDPNFARVKIAIADGEIGDVVQVKLTSRDPSPPPVEYVRGGGGIFKDMAVHDLDMSRFLMGSEPKRILAQGSCQIDHAIDDLQGAEAFDTANIMVEYENGRTAVIDVCRQAVYGYDQRAEALGVKGMIQTDNMYPNTARVYLKGFTGNADMPYDFFMSRYKEAYIQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGKSAEERRWVSFDEIPEVNACSTPDSCEIIDPIEF----AKHGET-AKEIGEGFFKLAQEMLGKS 1401
            ++NVGVIGAGRIG+VHLEALASC +A+P+IISNPTVSKAEAAA K+N+P  +GD M+VI HP+V+AVWICSPS FHADQIKACAA GKH+FCEKPIATD+ +T+EAINACK A VKLMTALQRRFDPNFARV+ AI  GE+G  + VKL SRDP+PPP+ YV G GGIF DMAVHDLDMSRFL+G EP+ ILA GSC ID AI++L G EA+DTA+++++Y  G+ A IDVCRQA YGYDQRAE LG KGMIQTDNMYPNTARVY K FTGNADMPYDFFMSRYKEAY++ET AFC  LVND+PSPC+GEDGL ALIMA+AAGKSAEE RWV F EIPE   C+ P  CE++ P +     +K G+   KE    + K A E+L  S
Sbjct:   60 VVNVGVIGAGRIGLVHLEALASCPDARPVIISNPTVSKAEAAAKKFNLPEWTGDDMEVINHPDVEAVWICSPSNFHADQIKACAAAGKHVFCEKPIATDLAQTVEAINACKIANVKLMTALQRRFDPNFARVRDAIQQGEVGSPIMVKLCSRDPAPPPLSYVEGSGGIFCDMAVHDLDMSRFLVGEEPEEILAYGSCMIDKAIEELPGPEAYDTASVIIKYPGGKQAFIDVCRQAPYGYDQRAEVLGSKGMIQTDNMYPNTARVYTKDFTGNADMPYDFFMSRYKEAYLRETEAFCKALVNDEPSPCTGEDGLFALIMALAAGKSAEEGRWVKFSEIPETVFCTDPLKCELVVPEDNEDNDSKEGDKKGKESSPEWLKRASELLNLS 446          
BLAST of mRNA_A-nodosum_M_contig954.19.1 vs. uniprot
Match: A0A7S1UAZ2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAZ2_9STRA)

HSP 1 Score: 543 bits (1399), Expect = 1.250e-184
Identity = 269/368 (73.10%), Postives = 302/368 (82.07%), Query Frame = 1
Query:  241 ALSMKIINVGVIGAGRIGIVHLEALASCANAKPIIISNPTVSKAEAAAAKYNVPYSSGDAMDVITHPEVDAVWICSPSQFHADQIKACAANGKHIFCEKPIATDVPETIEAINACKAAGVKLMTALQRRFDPNFARVKIAIADGEIGDVVQVKLTSRDPSPPPVEYVRGGGGIFKDMAVHDLDMSRFLMGSEPKRILAQGSCQIDHAIDDLQGAEAFDTANIMVEYENGRTAVIDVCRQAVYGYDQRAEALGVKGMIQTDNMYPNTARVYLKGFTGNADMPYDFFMSRYKEAYIQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGKSAEERRWVSFDEIPEVNACSTPDSCEI--IDPIEFAKHG 1338
            A+ MK +NVGVIGAGRIG+VHLEAL+SC N   +IISNPTVSKAEAAA +YNVP  SG  +DVI +P+VDAVWICSPS FHADQIK CAA GKHIFCEKPIATD+ ETIEAIN C  AGVKL TALQRRFDPNF RVK AI  GE+G+   VKL SRDPSPPP EYV+GGGGIF DMAVHDLDMSRFLMG EP  ILA GSCQID  I +L+G+EA+DTA  +++YENG+TA+IDVCRQA YGYDQRAE LG +GMIQTDNMYPNTAR++ K FTGNADMP+DFFMSRYKEAY+QETL+FCD LV D P  C+GEDGLMALIM+IAA +SA E RWV F EIPE   C+ P SCEI  ID    A+ G
Sbjct:   49 AMHMKTVNVGVIGAGRIGLVHLEALSSCPNVNTVIISNPTVSKAEAAAKQYNVPNFSGSDVDVIENPDVDAVWICSPSSFHADQIKRCAAAGKHIFCEKPIATDLAETIEAINLCNKAGVKLFTALQRRFDPNFRRVKSAIEAGEVGEHHMVKLCSRDPSPPPFEYVKGGGGIFADMAVHDLDMSRFLMGCEPVEILATGSCQIDKKIMELEGSEAYDTATCVIKYENGKTAIIDVCRQAPYGYDQRAEVLGTEGMIQTDNMYPNTARIFTKDFTGNADMPFDFFMSRYKEAYVQETLSFCDSLVTDAPVQCTGEDGLMALIMSIAADRSAAENRWVKFSEIPETVFCTDPTSCEIGEIDEASAAEEG 416          
BLAST of mRNA_A-nodosum_M_contig954.19.1 vs. uniprot
Match: F0Y3X5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3X5_AURAN)

HSP 1 Score: 534 bits (1376), Expect = 7.380e-182
Identity = 267/355 (75.21%), Postives = 295/355 (83.10%), Query Frame = 1
Query:  250 MKIINVGVIGAGRIGIVHLEALASCANAKPIIISNPTVSKAEAAAAKYNVPYSSGDAMDVITHPEVDAVWICSPSQFHADQIKACAANGKHIFCEKPIATDVPETIEAINACKAAGVKLMTALQRRFDPNFARVKIAIADGEIGDVVQVKLTSRDPSPPPVEYVRGGGGIFKDMAVHDLDMSRFLMGSEPKRILAQGSCQIDHAIDDLQGAEAFDTANIMVEYENGRTAVIDVCRQAVYGYDQRAEALGVKGMIQTDNMYPNTARVYLKGFTGNADMPYDFFMSRYKEAYIQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGKSAEERRWVSFDEIPEVNACSTPDSCEIID 1314
            MK++NVGVIGAGRIG+VHLEA+A C +AK +IISNPTVSKAEAAA +Y VP  S DA DVI HP+VDAVWICSPS FHADQI   AA GK IFCEKPIATD+PETI AIN C+ AGVKLMTALQRRFDPNFARVK AI  GE+G+ + VKL SRDPSPPP EYV+GGGGIFKDMAVHDLDMSR LMGSEP  ILA GSC ID  I +L+GAEA+DTANI+V Y NG+ A+IDVCRQA YGYDQRAE LG K M+QTDNMYPNTAR+Y   FTGNAD+PYDFFMSRYKEAY QETLAF D LVNDKPSPCSGEDGL+ALIM+IAAG SAEE+RWV F E+     C   D C I+D
Sbjct:    1 MKVVNVGVIGAGRIGLVHLEAIAQCQDAKCLIISNPTVSKAEAAAKQYYVPEFSADADDVINHPDVDAVWICSPSSFHADQIMKAAAAGKSIFCEKPIATDLPETIVAINKCEEAGVKLMTALQRRFDPNFARVKEAITKGEVGEPIVVKLCSRDPSPPPFEYVKGGGGIFKDMAVHDLDMSRHLMGSEPIEILASGSCHIDKQITELEGAEAYDTANIIVRYANGKEAIIDVCRQAPYGYDQRAEVLGTKAMMQTDNMYPNTARLYAADFTGNADLPYDFFMSRYKEAYKQETLAFIDALVNDKPSPCSGEDGLIALIMSIAAGISAEEQRWVKFSEVAASVKCDE-DGCMIVD 354          
BLAST of mRNA_A-nodosum_M_contig954.19.1 vs. uniprot
Match: A0A7S2CX38_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CX38_9EUKA)

HSP 1 Score: 533 bits (1372), Expect = 1.240e-180
Identity = 263/349 (75.36%), Postives = 294/349 (84.24%), Query Frame = 1
Query:  256 IINVGVIGAGRIGIVHLEALASCANAKPIIISNPTVSKAEAAAAKYNVPYSSGDAMDVITHPEVDAVWICSPSQFHADQIKACAANGKHIFCEKPIATDVPETIEAINACKAAGVKLMTALQRRFDPNFARVKIAIADGEIGDVVQVKLTSRDPSPPPVEYVRGGGGIFKDMAVHDLDMSRFLMGSEPKRILAQGSCQIDHAIDDLQGAEAFDTANIMVEYENGRTAVIDVCRQAVYGYDQRAEALGVKGMIQTDNMYPNTARVYLKGFTGNADMPYDFFMSRYKEAYIQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGKSAEERRWVSFDEIPEVNACSTPDSC 1302
            I+ VGVIGAGRIG+VHLEAL+SC NAK +IISNPTVSKAEAAA KY +P  SGDAMDVI HP+V+AVWICSPS FHADQIKACAA GKHIFCEKPIATD+PETIEAINAC+ AGVKLMTALQRRFDPNF RVK AI  GE+GDVV +KL SRDP+PPP EYV+GGGGIFKDMAVHDLDM+R+LMGSEP  ILA GSCQID  I  L G EA+DTANI++++ NG+ A IDVCRQA YGYDQRAE LG + MI TDN YPNTAR++   FTGNADMPYDFFMSRYKEAY+QETLAF + LVND+PSPC+G DGL+AL+MAIAAGKSAEE RWV   E+        PD C
Sbjct:   49 ILGVGVIGAGRIGLVHLEALSSCDNAKAVIISNPTVSKAEAAAEKYKLPSFSGDAMDVINHPDVEAVWICSPSSFHADQIKACAAAGKHIFCEKPIATDLPETIEAINACEQAGVKLMTALQRRFDPNFQRVKQAIVKGEVGDVVTLKLCSRDPAPPPFEYVKGGGGIFKDMAVHDLDMARYLMGSEPIEILALGSCQIDEEIKVLPGPEAYDTANILMKFANGKCATIDVCRQAPYGYDQRAEVLGKEAMIMTDNTYPNTARIFSSTFTGNADMPYDFFMSRYKEAYVQETLAFVEALVNDEPSPCTGIDGLIALVMAIAAGKSAEEGRWVKMSEL-------APDLC 390          
BLAST of mRNA_A-nodosum_M_contig954.19.1 vs. uniprot
Match: A0A7S3NPK1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPK1_9STRA)

HSP 1 Score: 525 bits (1351), Expect = 1.030e-177
Identity = 256/360 (71.11%), Postives = 294/360 (81.67%), Query Frame = 1
Query:  235 GAALSMKIINVGVIGAGRIGIVHLEALASCANAKPIIISNPTVSKAEAAAAKYNVPYSSGDAMDVITHPEVDAVWICSPSQFHADQIKACAANGKHIFCEKPIATDVPETIEAINACKAAGVKLMTALQRRFDPNFARVKIAIADGEIGDVVQVKLTSRDPSPPPVEYVRGGGGIFKDMAVHDLDMSRFLMGSEPKRILAQGSCQIDHAIDDLQGAEAFDTANIMVEYENGRTAVIDVCRQAVYGYDQRAEALGVKGMIQTDNMYPNTARVYLKGFTGNADMPYDFFMSRYKEAYIQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGKSAEERRWVSFDEIPEVNACSTPDSCEIID 1314
            G  +  +++NVGVIGAGRIG+VH+EALA+C NAK +IISNPTVSKAE+ A  YNVP  + DA +VI HP+V+AVWICSPS FHA+Q+  CAA GKHIFCEKPIATD+PETI AIN C  A VKLMTALQRRFDPNFARVK AI D EIGD++ +KL SRDP+PPP EYV+GGGGIFKDMAVHDLDMSR LMGSEP  ILA G+C ID  I  LQG EA+DTANI+V Y  G+ A+IDVCRQA YGYDQRAE LG K MIQTDNMYPNTAR++   +TGNAD+PYDFFMSRYKEAY QET+AF D LVND PSPC+GEDGL+ALIMAIAAGKSA+E RWV F E+ +   C   + C I+D
Sbjct:   24 GLQIPSRVVNVGVIGAGRIGVVHVEALANCQNAKCVIISNPTVSKAESVARMYNVPEWTADADEVINHPDVEAVWICSPSSFHAEQLVKCAAAGKHIFCEKPIATDLPETISAINVCADANVKLMTALQRRFDPNFARVKKAIVDNEIGDIITMKLCSRDPAPPPFEYVKGGGGIFKDMAVHDLDMSRHLMGSEPVEILASGTCHIDKKIMKLQGPEAYDTANIIVRYAGGKEAIIDVCRQAPYGYDQRAEVLGTKAMIQTDNMYPNTARIFAADYTGNADLPYDFFMSRYKEAYKQETVAFVDALVNDMPSPCTGEDGLIALIMAIAAGKSAQENRWVQFSEVADSVKCDE-EGCMIVD 382          
BLAST of mRNA_A-nodosum_M_contig954.19.1 vs. uniprot
Match: K8YRS1_NANGC (Oxidoreductase domain protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRS1_NANGC)

HSP 1 Score: 523 bits (1348), Expect = 6.580e-177
Identity = 265/388 (68.30%), Postives = 307/388 (79.12%), Query Frame = 1
Query:  244 LSMKIINVGVIGAGRIGIVHLEALASCANAKPIIISNPTVSKAEAAAAKYNVPYSSGDAMDVITHPEVDAVWICSPSQFHADQIKACAANGKHIFCEKPIATDVPETIEAINACKAAGVKLMTALQRRFDPNFARVKIAIADGEIGDVVQVKLTSRDPSPPPVEYVRGGGGIFKDMAVHDLDMSRFLMGSEPKRILAQGSCQIDHAIDDLQGAEAFDTANIMVEYENGRTAVIDVCRQAVYGYDQRAEALGVKGMIQTDNMYPNTARVYLKGFTGNADMPYDFFMSRYKEAYIQETLAFCDCLVNDKPSPCSGEDGLMALIMAIAAGKSAEERRWVSFDEIPEVNACSTPDS---CEIIDPIEFAKHGETAKEIGEGFFKLAQEMLGK 1398
            ++MK + VG+IGAGRIGIVHLEALA C +A P+IISNPTV+KA+ AA K+N    + DAM VI HP+VDAVWICSPSQ+HADQIKACAA GKH+FCEKPIAT + ETIEAIN C+ AGVKLMTALQRRFDPNFARVK AI +GE+G+VV VKLTSRDPSPPP EYVRGGGGIFKDMAVHDLDMSRFLMG+EP+ ILA GSC ID  I  L GAEAFDTA ++V+Y  G+TA IDVCRQA YGYDQRAE LG+KGMI TDNMYPNTAR++ K  T NAD+PYDFFMSRYK+AY+QET  F  CL  D P PC+GEDGL+AL+MAIAA KSA E RWV F EIP +NA     S   CE+ +    + +G   +E  +G+ K A   + K
Sbjct:   47 MAMKDVGVGIIGAGRIGIVHLEALAGCPSAIPVIISNPTVAKAQEAAVKFNAREFTDDAMKVIQHPDVDAVWICSPSQYHADQIKACAAAGKHVFCEKPIATGLAETIEAINTCREAGVKLMTALQRRFDPNFARVKRAILEGEVGNVVSVKLTSRDPSPPPFEYVRGGGGIFKDMAVHDLDMSRFLMGTEPESILALGSCHIDERIGSLPGAEAFDTAVVIVKYPGGKTATIDVCRQAPYGYDQRAEVLGLKGMIATDNMYPNTARIFTKDSTRNADLPYDFFMSRYKDAYLQETKEFVKCLSEDGPVPCTGEDGLIALVMAIAAEKSALEGRWVDFKEIP-INAIHCDPSGTHCELNEMEASSMNGGRKREAVKGWIKDAVSFIKK 433          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig954.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVN4_ECTSI2.380e-24476.38Myo-inositol dehydrogenase myo-inositol dehydrogen... [more]
A0A836CJ29_9STRA5.380e-20681.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z5H5_9STRA1.100e-20380.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1RSK2_HETAK2.940e-19772.84Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2R4A5_9STRA5.810e-18870.03Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1UAZ2_9STRA1.250e-18473.10Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
F0Y3X5_AURAN7.380e-18275.21Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2CX38_9EUKA1.240e-18075.36Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S3NPK1_9STRA1.030e-17771.11Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
K8YRS1_NANGC6.580e-17768.30Oxidoreductase domain protein n=2 Tax=Monodopsidac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig954contigA-nodosum_M_contig954:109677..116708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVN4
PFAMsGFO_IDH_MocA,GFO_IDH_MocA_C
Model size2341
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons10
Evalue4.07e-250
EggNOG OGsCOG0673@1|root,KOG2741@2759|Eukaryota
Ec32 ortholog descriptionMyo-inositol dehydrogenase myo-inositol dehydrogenase
Ec32 orthologEc-01_006070.1
DescriptionD-xylose 1-dehydrogenase (NADP ) activity
Cds size1407
COG categoryV
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig954.19.1prot_A-nodosum_M_contig954.19.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig954 109677..115774 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870458.100527-CDS-A-nodosum_M_contig954:109676..1099631680870458.100527-CDS-A-nodosum_M_contig954:109676..109963Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 109677..109963 +
1680870458.112919-CDS-A-nodosum_M_contig954:111172..1112601680870458.112919-CDS-A-nodosum_M_contig954:111172..111260Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 111173..111260 +
1680870458.1308932-CDS-A-nodosum_M_contig954:112240..1123571680870458.1308932-CDS-A-nodosum_M_contig954:112240..112357Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 112241..112357 +
1680870458.1449034-CDS-A-nodosum_M_contig954:112618..1128191680870458.1449034-CDS-A-nodosum_M_contig954:112618..112819Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 112619..112819 +
1680870458.1545503-CDS-A-nodosum_M_contig954:113475..1136041680870458.1545503-CDS-A-nodosum_M_contig954:113475..113604Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 113476..113604 +
1680870458.1651502-CDS-A-nodosum_M_contig954:114096..1142421680870458.1651502-CDS-A-nodosum_M_contig954:114096..114242Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 114097..114242 +
1680870458.1791377-CDS-A-nodosum_M_contig954:114415..1144721680870458.1791377-CDS-A-nodosum_M_contig954:114415..114472Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 114416..114472 +
1680870458.1941319-CDS-A-nodosum_M_contig954:114742..1148301680870458.1941319-CDS-A-nodosum_M_contig954:114742..114830Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 114743..114830 +
1680870458.2049983-CDS-A-nodosum_M_contig954:115079..1152191680870458.2049983-CDS-A-nodosum_M_contig954:115079..115219Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 115080..115219 +
1680870458.2180896-CDS-A-nodosum_M_contig954:115620..1157741680870458.2180896-CDS-A-nodosum_M_contig954:115620..115774Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 115621..115774 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870458.2284615-UTR-A-nodosum_M_contig954:115774..1167081680870458.2284615-UTR-A-nodosum_M_contig954:115774..116708Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig954 115775..116708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig954.19.1

>prot_A-nodosum_M_contig954.19.1 ID=prot_A-nodosum_M_contig954.19.1|Name=mRNA_A-nodosum_M_contig954.19.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=469bp
MSLVGSLVLCLFLAVAIDAFVIHSSAPTGALRRLELKISANTGAARLSAS
TAPLPLTRSSFVTSASCKSAGGIAHGGKGAALSMKIINVGVIGAGRIGIV
HLEALASCANAKPIIISNPTVSKAEAAAAKYNVPYSSGDAMDVITHPEVD
AVWICSPSQFHADQIKACAANGKHIFCEKPIATDVPETIEAINACKAAGV
KLMTALQRRFDPNFARVKIAIADGEIGDVVQVKLTSRDPSPPPVEYVRGG
GGIFKDMAVHDLDMSRFLMGSEPKRILAQGSCQIDHAIDDLQGAEAFDTA
NIMVEYENGRTAVIDVCRQAVYGYDQRAEALGVKGMIQTDNMYPNTARVY
LKGFTGNADMPYDFFMSRYKEAYIQETLAFCDCLVNDKPSPCSGEDGLMA
LIMAIAAGKSAEERRWVSFDEIPEVNACSTPDSCEIIDPIEFAKHGETAK
EIGEGFFKLAQEMLGKSA*
back to top

mRNA from alignment at A-nodosum_M_contig954:109677..116708+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig954.19.1 ID=mRNA_A-nodosum_M_contig954.19.1|Name=mRNA_A-nodosum_M_contig954.19.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7032bp|location=Sequence derived from alignment at A-nodosum_M_contig954:109677..116708+ (Ascophyllum nodosum dioecious)
ATGTCTCTCGTAGGTAGCCTTGTCTTGTGCTTGTTTCTCGCGGTTGCCAT CGATGCGTTTGTAATCCATTCCTCGGCGCCGACGGGTGCGCTGCGTCGAT TGGAGTTAAAGATCTCGGCAAATACAGGGGCGGCTCGTTTGTCCGCGTCG ACGGCCCCATTACCTCTGACGCGGTCGTCCTTCGTGACTTCAGCATCATG CAAATCAGCTGGTGGCATAGCGCACGGCGGGAAGGGGGCCGCGTTGTCCA TGAAGATAATCAACGTGGGCGTCATCGGGGCGGGCAGGTGCGTTGACGTC CCTGTCAGCGCAAGTTATGACTTCAGATTGGCACCCCTTTTTTGAACCCT AGTGGAGATCTATCGTCCTTTTGAATTCCCACGTCCGCCCTGCCCTCCAG ATAGGCTACGAAATGAAAACTACGTCCTGATGTTCCTTCTATATAGCTGG ACTCTAGCTTAGATGTGGACGATTTGTGTAGACTTTTTAGGTTTGAGCTT GGATTTAGCGCCTCTGCTGTCGGTGTTGAAGCTAGCTACTCTTGGAGTGA AGACTGCACCGGCCTAACGGTAGCCATCTACTGCTGTAGTGTTGTACTGT ACGAAGTACTTTTAATAGTAATATAACTACTGTTGTACCCTTGAAACGGT GATTATCGGACCGGCAAGGTCGTACACTCAGAAGAACATTGTAACTCAGC TCAACTGCTACTATTATGAGCTGTATTAATCAGATAATAATGGTACTTGA GCTTGAGCACGGGAAGCTGTTTTTTAGCCCGCACTCTTTTTTGTAGTACG TACACGCATTTTTTTGGCATGAGCATACAGCAGGCTTGTGGTTCAGACCC CTCGAGTTCGAACCAGGACATCGCTCCTCAAGCTGTTGGCGCAGCAGATC CCCACAACTCTGGCACGCTTCGAGTATCACCATTCCGTAATCATATATCC ATCTACCCTGCGGTGATCGGCTAGGCGATGACAACGCCGTCCACCTCTAC CGCAGTACAGTCCTCCTACGCCGTATGTTGAACATGTCCTGTCCTCGACA ACATCCGTACAGACAGCATGATTCTTTATTTCCAAAAATGAGATTCAAAT TCTGTAACCTTGGCCGCAAGAGTACTTTTTTACCACTGTACACAGTATCT GCAGTACGTCATTTCGCAAAAGGCAAACCAAACCTGTGAGAGTTAGTCTA CAAGAGTGGTCCGGGTAAGATATCCATTCGACACCTCGACACTTTCACCG GGCGTGTAGCTCTAGTTTCAGCGGGGAGGAAAGGGGTTCGTGGACGCTAC ACCGATCGTCTTGTAGATACGCTGGTGAAGCACGAGGAAACGAGCCGCGA ATCGCACCCTTTACCGCAGAAGACAAAGCACCCACGTACTGCTGTACAAC TTTAGTAATCGAATTACAGTTTTTCATCTTTTCTTTTATATTTCCACCTA CGAGTACGCATAAAATCCCGTCCCATGCCACGCTTCACTTTGCCAGGATC GGCATCGTCCATCTGGAGGCTCTGGCCAGCTGCGCGAACGCTAAGCCAAT AATTATCAGCAACCCCACAGTTTCAAAGGCAGAGGTAGGTACTCTTGAGG AAACAACGGAAACCGCGGTTTGATTAATATTAGTCTAGGTCAACAGAGAG TAGTGCTTTATAAAGTGCATTAAGGTCGCGATGTATTCCTGCTAAAGCGT GCGTGGCCAACTCGGAACGACATTTTTTCTCCATTCCTCCGGTTGTTTAA AGAAAAATCTTTTGTTTGGTTTGCTTGTTGCTTATTCGAACTGTCAGTTG TCAGGGAAAAACGAACAGCTCATCAACGTACCTTGGTGCGTGTTTTTCGT TAACAAAAAAAAGAAGCGCACAGAAATAATCAATCCATCTGCGTTGTAGA TCATAAAACAGCACAGCTATGGTTGAAAGGCTTTGTTGGGTTTCTTGGTC ATCGTCATACGACGCTACTTCAAGACAGACAGTTCTACTGTTGTATTACA CTGTATTAATTAGTAACAATACGTCGAATCGCTTCTTTTTCTTACTTAAC GATATTCTGCAATACAAAGCAAAGGAAATTCAAATTTCATTTTCTGACTA TCATGTACCACTGCCGTTTCCTCTTTGTATGGAGAGAACGTTCTATGTTT TCCTTCAGGATGGTGTTTTTCTACCGTGTGACCACGGGCTGGATTTTTGG CATCAACTTATTGAATTCTCACATAAGCTGATGTCAAAAATCCAGCCCGT GGTCACAAGGTAGGAAAACACCATTCGGAAGGAAAAAGCGTACAACGTAC TCTCCATTCAAAGAGAAAGCGGCAATGGTACAAAAAATACTCGGATATGT GAGCATTCAATAAAAAAAGCTGCGCTACAAATATGAATCCTCGAAACGCC AGCAGTCTCTCACATGGACCAGTACTGTACTGTACATTTCGCTGTTTTTC GTTACGGATTGGCGATAGCCGTGCCAATGATCTCCTTTTAATCTAAGTGA ATTCTTGTATTAATGATTACGATAGCGCTATAATATATCTCCATGATTAT GATTATGATGTCAGGCCGCGGCGGCGAAGTACAACGTGCCCTACTCATCG GGAGACGCGATGGATGTCATCACGCACCCGGAAGTCGATGCCGTCTGGAT CTGCTCCCCCTCCCAGTTCCACGCTGACCAGGTCTGATTCAAGTCTCGTG CGCATGCATCATCATTCCGACGTCCGAGGCGCAAACAGTTGTATGACGGC TCAAAGGAAATGGACGAACGCTTCCTCTAGTAGACTATTAATAGCTCTAA TGTCAGACTGTCCTGTTACATACTACTGTTGTATCATTTTCCCTCTTTTT CACCGTCCATTCCTGCTTCCCCCCCCTGGTCACGCTTCCATGGTGCCGTG CTTGACGATGCGCTGTATCGGCGATTCTCGCTGCGTCGACAGATCAAAGC GTGCGCGGCGAACGGCAAGCACATATTCTGCGAGAAGCCCATCGCGACAG ACGTGCCCGAGACTATCGAGGCCATCAACGCCTGCAAGGCCGCGGGCGTT AAGCTCATGACCGCCCTGCAGAGGAGGTTCGACCCCAACTTCGCCCGCGT GAAGATCGCCATCGCCGACGGAGAGATCGGTGATGTCGTGCAGGTACATC ACAGCTCATCTTGGGCTCTCCACAAGCGAAGACAAGACAAGACAGTAATG GAGTATCTCTCTCCAAAACACTAGAGCTTCCAGTGGCGGTAAAATGCTGT TGGATGTTTTCACGTAGCTTTGACCTTTCACTCCCCGTCTGCATAGCTTT GGTTTACGCATCCATTCCTTGACGCAAGTCACATATACCGTCTGTAGCGA CGGCTGGCGAGATTAGCGTGAGCGGGAAACAGACCACAACGATTTCCAAG CGTGACGGTATGCTTGCTTGGGCTAGGTTACTCGCGACTGGTGGATTTGA AGAGAACGTTCCGTCCAGTTCTGATTTTGACAGCGTCAACGTGCTAGTAA TCTTTGACAGGATCATCAGGATTTTGTCGCGTGTTTGCAGCACAAAGGGG TGGACGCGAAAGCCGCTGATGACGTCTCGCTAACCTCAGGCCCGTTTCAT TCTATCGAGGATGCTCGCCCCGGTGCCAGAAGGGAAAATGTGCCGTTGAC GTGCCGCCACCACTCTAGGCGTAGACGCGAGACCAGCGCGGCATCTCTCA CGCCACCGACCCCTCTTTTGTTTTCACCTTGACAACTCTCTCAGTATAAT ATTGCACTACGCTTTTCGTGATGGTGGATCGCTTCACCCCCGTTGGCAGG TTAAGCTCACGTCGCGCGACCCTTCGCCGCCGCCTGTGGAGTATGTCCGC GGAGGTGGTGGTATTTTTAAGGATATGGCCGTCCACGACCTCGACATGTC TCGCTTCCTTATGGGGTCGGAACCCAAGGTCACCATAATAACGCGTCGGT TGGCGGGTTGCCCAAAATGTCTTATGTACTTGAATTTGGTTGGAGGTAGA ATGCGCGGTCACAAAAATACTCGCTCGGGGTGCATACGGTCTGTTTTTCC CCCATTCTTGATGCCTGTTATTCCTCGCCGGTGGTTACGAAGCCTCTAGG AGGGAATCTAATGATGGGGTAGGGAAGAGCTTGTGCTACCCCCCTGTTGT TGGGAATTTTTATGTGGCCGGCGTTAGGGGTTCTGGGGCACTCGTGCGAA ATTACCCTTGAATCCAACGTGCTCTGCATCGGAATAGGGTACTTCCAGAA AGAGAAGAGCCTTGGGCGCCGTTTTTTTTCGAGGCATGTGTGTTTCTCGG GGGGAGGGGGGGGGTGGGGGGGATTGTTCGGGTGTTGGTTTTGGGTTGGC CTTGTTGTCAAATATATCTTGGCGTGTTCATAGCTCCTTTTCTCTTTCGC GCTCCTCCTCCCTCTTGCAGCGTATTTTGGCTCAGGGTTCCTGCCAAATC GACCATGCGATCGACGACCTGCAGGGTGCCGAGGCCTTCGACACCGCTAA CATCATGGTGGAGTACGAAAACGGCAGAACCGCCGTCATCGACGTTTGTC GACAGGCAGTTTACGGGTGGGTTGGTTTTTCGTTCCAGAGAGCTTTTATT TGAATGAAATATATGGTGCGATGGATTTCGGTATCGAACCGTCGTGACGT GGTGTGGCTCCCCCGCGCAGACCTCACGAGAGAGTTGTCATGCCTCGTTC GTTTTCGGTGTACGCTCTTGGTGTGACGCGCCTTCCCAGGTACGATCAGC GTGCGGAGGCATTAGGCGTCAAGGGGATGATCCAGACCGACAACATGTGG GTACCCTGCGGTGTCTTGATGCCTATGAATCTTGCGTTATTGATCGTGCA CGTTCTCCTGGCATAAGTTGGAGGGGGGTTCCTGTCAGTTCCAGGGGCTC GCTTTTCTTCTTCCCTTTTCGACCCGAGCTCTGTGTCTACTGTCACCGCG GACGTGTCAAAAAACCATCGGTATGTTTATTTACATGTGTTTGTTTAGTT TCCTCACCTCGACGATAACCATAAAAGCTACGGTCGTTGCCACCACCCCC TGCGTCGCCGCGGCAGGTATCCCAACACCGCGCGAGTATACCTCAAGGGC TTCACGGGAAATGCAGACATGCCTTACGACTTCTTTATGAGCCGGTACAA GGAGGTAAGCAAGCATGTCGGGAGGGGACCCCCCCCGCGGTGCGCATCCT ATGGTTCCCAAATGCTCACCGTAGGCTTTTGTCTACGCGGATGAATCAAT CTAATAGCCTCGCCTTCGAGGTGTCGTGCACCAAGCCAGTGTTGCTGTGA AATATAGGGTTGTCTTGCGAGTTCAAAAATCCCTCGCAATGTTATTCCAT TATTTTTGACAGATTATTCTTTCTTTTGTTCGTTCGTTCGTTCGTGCGAC CAGGCGTACATCCAGGAGACGCTTGCCTTCTGCGACTGTCTGGTGAACGA CAAGCCCTCGCCGTGCTCGGGAGAGGACGGTCTGATGGCCCTCATCATGG CCATCGCGGCGGGCAAGTCGGCTGAAGAGCGCCGATGGGTCAGGTGGGCA CTTGATCCTTGAAGCTTCTCATCACAGTTTTTTTATTAGTTTGTGGCCGT CAACGGCGTTCTGGCGGAACGTTCTCTAAATACTGTCTAGATCATGTCGT GGTGGTTCGGGAAGCGTCAGGAGTCGAGAGGTTACATCCACGCCGCGAAC GCATGTATTGTCGCGACCTTAAACACCCGCTGCGAGAGGAGCCACAGAGC CAGGCGAAATAGATTATCCAGGGGTGGTTTCTATCGTTCCAGGAGACTCA GCGTGTCGTGTTTTGTCCCCGATCTGTTCGATTCCCCGTACGCATTCGCC TGTAACCCCTTGGAGTTTGGGCCTGTTCACAACTGCCAACCAACCCTTGC CTGTTTTACGCGTGGACCACCCTCGACTTTCGAATGCCGCGCAGCTTCGA CGAAATCCCTGAGGTGAACGCTTGCTCCACGCCGGACTCGTGTGAGATCA TCGACCCCATCGAGTTCGCCAAGCACGGCGAGACTGCGAAGGAAATCGGA GAAGGATTCTTCAAGCTCGCACAGGAAATGCTGGGCAAGTCGGCGTGAGG AATAAACTGCCATGCCGAAACCAAACGAAACCTCAGCAAAGTACCCAATG ATAACATGTCTTAATTCGGAGATGCTTCTGAAAGTGTGAAAAACAAGCAA ACCGTTTTTGTAGGAAAACTCGAGTGCTTTCAAGGATTATGCAATGCGCG ACTAACCGAGAGCCCTCTCGAGGCGGGCGAGTTGTGGAGCGCTCTATTCA GAGTTGTTTGCCCCTAAGTTCTTGCTTCCGGTTTGGGCACCCTTTTCAAC AAGCAAATCTGATCACGTGTGCGTGGTGGTTGACCGCGCACGAGTTTGAG GGGGGAGAGTTGTCCCTGATTCTTGTGAAGTCGGTTCCTGCTGGGTGAGA GGTAAGAGATAGAGGAGAATAGAGGTTCGTAGATAAGGGCCTACCGCGGT GATCACACAAGGTTTGGGGCCCATGAGAAGCATGCAGTATTATAAACGTA CTGTCCAAAAGATGGGGGTAAACATAAGCACTCTACATTACACTGTAATT TTTGACGTGGGGCTGTCCCTTTAAGAAGTCGAATAACTGTTCTAGACAGT TCACATCTTTTTACGTACATTAGCAATTTTTTGTTAGCTCTGGGAGCTAA CGTATGTTTTTTTTCTGCGTCGGGGAGGACGAGTTGCGCCATTTTTTTTG TTTTTTTCTCTGCAGATTGCGGGGATTTTGTAACCAGGCCAAGGTGGTCT GGGTGAGTTGTGGTCGCGTCATGCTTTGATCGACGTTCGGTCTTCTGATC GAAGGCGGGGGTGTAAATGAAAAGGAAATATGCAGCAGATTAAGCAAAAT AATAATTCGAGCAAGTAATGGATTTTTTTTAGTCCTTGCCATCACCAGAG GACTGTGGGGAGCGCGTCAAAGTGTGTCGTAATAACGGAGCGACAGCGAG GCCGGGCCGCGAGGTTTCTCGGCAAAACCGCC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig954:109677..116708+

>mRNA_A-nodosum_M_contig954.19.1 ID=mRNA_A-nodosum_M_contig954.19.1|Name=mRNA_A-nodosum_M_contig954.19.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1407bp|location=Sequence derived from alignment at A-nodosum_M_contig954:109677..116708+ (Ascophyllum nodosum dioecious)
ATGTCTCTCGTAGGTAGCCTTGTCTTGTGCTTGTTTCTCGCGGTTGCCAT
CGATGCGTTTGTAATCCATTCCTCGGCGCCGACGGGTGCGCTGCGTCGAT
TGGAGTTAAAGATCTCGGCAAATACAGGGGCGGCTCGTTTGTCCGCGTCG
ACGGCCCCATTACCTCTGACGCGGTCGTCCTTCGTGACTTCAGCATCATG
CAAATCAGCTGGTGGCATAGCGCACGGCGGGAAGGGGGCCGCGTTGTCCA
TGAAGATAATCAACGTGGGCGTCATCGGGGCGGGCAGGATCGGCATCGTC
CATCTGGAGGCTCTGGCCAGCTGCGCGAACGCTAAGCCAATAATTATCAG
CAACCCCACAGTTTCAAAGGCAGAGGCCGCGGCGGCGAAGTACAACGTGC
CCTACTCATCGGGAGACGCGATGGATGTCATCACGCACCCGGAAGTCGAT
GCCGTCTGGATCTGCTCCCCCTCCCAGTTCCACGCTGACCAGATCAAAGC
GTGCGCGGCGAACGGCAAGCACATATTCTGCGAGAAGCCCATCGCGACAG
ACGTGCCCGAGACTATCGAGGCCATCAACGCCTGCAAGGCCGCGGGCGTT
AAGCTCATGACCGCCCTGCAGAGGAGGTTCGACCCCAACTTCGCCCGCGT
GAAGATCGCCATCGCCGACGGAGAGATCGGTGATGTCGTGCAGGTTAAGC
TCACGTCGCGCGACCCTTCGCCGCCGCCTGTGGAGTATGTCCGCGGAGGT
GGTGGTATTTTTAAGGATATGGCCGTCCACGACCTCGACATGTCTCGCTT
CCTTATGGGGTCGGAACCCAAGCGTATTTTGGCTCAGGGTTCCTGCCAAA
TCGACCATGCGATCGACGACCTGCAGGGTGCCGAGGCCTTCGACACCGCT
AACATCATGGTGGAGTACGAAAACGGCAGAACCGCCGTCATCGACGTTTG
TCGACAGGCAGTTTACGGGTACGATCAGCGTGCGGAGGCATTAGGCGTCA
AGGGGATGATCCAGACCGACAACATGTATCCCAACACCGCGCGAGTATAC
CTCAAGGGCTTCACGGGAAATGCAGACATGCCTTACGACTTCTTTATGAG
CCGGTACAAGGAGGCGTACATCCAGGAGACGCTTGCCTTCTGCGACTGTC
TGGTGAACGACAAGCCCTCGCCGTGCTCGGGAGAGGACGGTCTGATGGCC
CTCATCATGGCCATCGCGGCGGGCAAGTCGGCTGAAGAGCGCCGATGGGT
CAGCTTCGACGAAATCCCTGAGGTGAACGCTTGCTCCACGCCGGACTCGT
GTGAGATCATCGACCCCATCGAGTTCGCCAAGCACGGCGAGACTGCGAAG
GAAATCGGAGAAGGATTCTTCAAGCTCGCACAGGAAATGCTGGGCAAGTC
GGCGTGA
back to top