mRNA_A-nodosum_M_contig954.13.5 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig954.13.5
Unique NamemRNA_A-nodosum_M_contig954.13.5
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig954.13.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig954contigA-nodosum_M_contig954:92308..95489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2158
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_006100.1
Cds size1377
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig954.13.5prot_A-nodosum_M_contig954.13.5Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig954 92545..94945 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870457.7053633-UTR-A-nodosum_M_contig954:92307..925441680870457.7053633-UTR-A-nodosum_M_contig954:92307..92544Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig954 92308..92544 -
1680870457.7732234-UTR-A-nodosum_M_contig954:94945..954891680870457.7732234-UTR-A-nodosum_M_contig954:94945..95489Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig954 94946..95489 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870457.7238145-CDS-A-nodosum_M_contig954:92544..929161680870457.7238145-CDS-A-nodosum_M_contig954:92544..92916Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 92545..92916 -
1680870457.7356098-CDS-A-nodosum_M_contig954:93283..939911680870457.7356098-CDS-A-nodosum_M_contig954:93283..93991Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 93284..93991 -
1680870457.752162-CDS-A-nodosum_M_contig954:94502..946431680870457.752162-CDS-A-nodosum_M_contig954:94502..94643Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 94503..94643 -
1680870457.7626064-CDS-A-nodosum_M_contig954:94789..949451680870457.7626064-CDS-A-nodosum_M_contig954:94789..94945Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig954 94790..94945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig954.13.5

>prot_A-nodosum_M_contig954.13.5 ID=prot_A-nodosum_M_contig954.13.5|Name=mRNA_A-nodosum_M_contig954.13.5|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=459bp
MSWNLGEIARTGFFPRIMPNEVENDYFVGVENSTSRSTRERDDRILLAIK
IKEPLQELEGGGGGDAIGTGEDTSDEYRVGESVTPYAGTGLITISDAGRV
QQNGDTGESVSSALETVTTRRADFACNGHLGGNGTEEWDPEVGRKQRKER
DQWRRSMSMGACIYSSSCSHGSNVSESGSSDEVFTSGIACDSSRRSSRRD
LYSNLRHSKTRAREVFRTTTRGSYDKYHTENARCRQTKSSESTIRSSTRT
ETSYDKERRAQTRVYHRTRRHRKVISGQKPDAANDNNMVTATLVGEMAGL
GRQAMANAVRIAVRTVVDSWTGVASVARKAVRRWKLRCGLDRPILPIAAN
KSNLQRKLRLDAPHGAQDRSRHTERALFRSFLGKSTGPSFPFLSWGQSDV
TVAESRESKLQGVHRGHSVVAELRESDHEVCYWVRDERTRGHGGNCNSPP
HSWEKVVV*
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mRNA from alignment at A-nodosum_M_contig954:92308..95489-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig954.13.5 ID=mRNA_A-nodosum_M_contig954.13.5|Name=mRNA_A-nodosum_M_contig954.13.5|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3182bp|location=Sequence derived from alignment at A-nodosum_M_contig954:92308..95489- (Ascophyllum nodosum dioecious)
CCTATCGTTCCCTTTCGCATCTCTACGTATGCCTAAGATGGCGGTTTCAT
TATATTTTGGTGTCCTATCGTTGCTCAAGGTGTTTTCTGTAGCTCCGACC
CCGATGGAATGTTTTAAAGATAGTAGTCTAATCACAACGATTTCCCACAT
TTCAGTTTGTGTTTGACGCAGGCGATTATACGATTGATATAATGTCACAG
AGAAGTAGAACGACCGGAGACTGGGACGGCTGGGTGCTCTATACGTCGAA
TTTGGGCCACAAGTATCACTGGAACCATCTTACTCACGAATCGCGATGGG
CCCTAGAAGAACAACCGACCAAGGTAGTTACAGTGTCGTCTGTTCGTGTT
CCAGCAGCAGAATTTCAAAGCAAACTTATCACGAAACTGTAAGGAGGATA
TGGATATGACATCAATATTTGACACAGTAAGTAGTGCGGGCCAGTCCATA
CCCGTACGAGTATACCGTCGAATCGACATAGGACATAATATCCGGTCGCC
CCGGTGATTCAGTTGGTAGCCTCGAAACATTCTGACGTTGGGACATGAGT
TGGAATCTTGGCGAAATCGCACGAACTGGGTTTTTTCCTCGCATCATGCC
CAACGAAGTGGAGAACGATTATTTTGTGGGTGTAGAAAATTCGACTTCAC
GGTCGACGAGGGAAAGGGACGACCGAATCCTTCTCGCGATAAAAATTAAG
GCAAGCACTACCGAAGGAAGGTGGAGAAATCCTGTGTGACACCGGCTGGT
GCTTGCACAAGTCTGATGTCCAGAATAAATAATAAATGGGATGACAACAC
ACAATTATTGATCCGAGCCTTAACGACCACGACACAATCCCTCAAGGAAC
CCCTTCAAGAGCTAGAAGGTGGCGGGGGCGGTGACGCTATCGGGACGGGA
GAAGACACGAGCGATGAATACAGAGTTGGAGAGTCTGTCACACCATATGC
CGGAACCGGTCTTATTACAATATCTGACGCAGGGCGGGTAGGTTGTGATC
ACGAAAACGTTTCGTTTTCTCGTGCCTGGATGTGTCGAACGCCTTTCGAG
TGCCCATACGTGTTATTTTGGATAGCGGACTCCGTCTTCGAGCTATAAAG
CATGATGATCAGGTAGTGAACAACGTACATGCAGGATGCATTTGTTCAAT
AGTTATTGTCGGGCAACATGATTATAATGGACGTCTTTATCATGATAGGT
CTTCCTTGAAAAATCTGAATGCATCTAAACATCCCGAACATTCCTACCAT
CCGTTACTTGTAGGGACAACTGTGTCGAAACGTTTGGTCGGGAACATCGA
TCGACTGTTAAAACAAAGTGCTTCACCCCATAGCGCTCAAAGTTGTATCC
TCATTGAGTGTATGGAAGTATATCCGTTGAGACAAAGCGCCTAGGCATTC
AAATGCCCCTTCTTAAGAACTTGCACGCATCTATCAGCAGAACTTCAATT
CCTTTGTTGGTTGACATTTCTCAGATGAAAATATTGGCTTTGTTCTAGGT
ACAGCAAAATGGAGACACGGGCGAAAGCGTTTCTAGCGCGCTTGAAACCG
TCACAACGAGAAGAGCCGACTTCGCGTGCAACGGACATCTGGGAGGCAAC
GGCACAGAAGAGTGGGATCCAGAGGTTGGGCGTAAGCAGCGCAAAGAGCG
TGATCAGTGGCGACGATCGATGTCAATGGGAGCATGCATCTACAGCAGTA
GCTGTAGCCACGGCTCCAATGTCAGTGAAAGCGGCAGCAGTGACGAAGTT
TTTACTAGCGGTATTGCCTGCGATTCGAGCAGGAGAAGTAGCCGTAGAGA
TTTGTATTCAAACCTTAGGCATTCGAAAACTCGCGCCCGAGAAGTATTCC
GTACGACGACCCGAGGAAGTTACGACAAATACCACACCGAAAACGCTCGA
TGTCGGCAAACCAAGTCCAGTGAGAGCACCATACGGTCTTCCACCAGAAC
GGAGACTTCGTACGACAAAGAGCGTCGCGCGCAGACTCGCGTATATCACC
GCACTCGACGTCACCGCAAGGTCATCTCTGGACAAAAGCCAGACGCCGCC
AACGACAATAACATGGTCACCGCGACACTTGTTGGGGAGATGGCTGGGTT
GGGTCGTCAAGCGATGGCGAATGCCGTGCGTATTGCGGTGCGAACTGTAG
TTGACAGCTGGACGGGTGTAGCATCAGTCGCCCGCAAAGCTGTTCGCAGG
TGGAAGGTGAGTTTCTCTCCACGGACCTAATCGTACCAAAGGAGGTATCT
CGTAGCCAGCGTGGCATGCGTGAATAGAAGAAACATGCACAAGTACTCAA
CAGTTTTGTAACACAGCTTCCCCCGTGGTGATAGTCGCAACCATGAGTTA
ACTTTTCTGGTTTCTTCCCCGTTTTCTGCGACGACTTATTTTGAGCACGA
TTACAAAGCTATGGTGCATGTGATCACTCAGATGGTTTCCACTGAGAGAA
TATACAATATGTATCTCTTTGATACATCCGTGTGCACGAACTGAACTACG
GCCGACCGTAATCCACAAGAAGTACCATTCTCATGATTTTTTGCTTGAAA
CCCTCTCGTTCACGCGACTTCAGCTTCGCTGCGGACTGGACAGGCCAATT
CTCCCAATCGCCGCTAACAAGAGCAATCTACAAAGGAAGCTGCGCTTGGA
TGCACCACATGGAGCTCAGGACCGCAGCCGGCACACGGAACGTGCTTTAT
TTCGCTCTTTCTTGGGCAAGAGTACAGGTCCCTCCTTCCCCTTCCTTTCG
TGGGGTCAATCGGATGTGACCGTCGCAGAGTCAAGGGAGTCGAAACTACA
GGGTGTGCACAGAGGGCATTCTGTCGTCGCGGAGTTACGCGAGAGCGATC
ACGAGGTTTGCTATTGGGTAAGAGACGAAAGAACGAGGGGTCACGGCGGC
AATTGTAATTCTCCTCCACATTCGTGGGAAAAGGTAGTTGTTTGATATCC
GTTCGAGGGGGCTGGGTAATGTAAGGACGTAAAAGGCCGCTCGATTTGAT
TTTTCAATTATTTATCCGTCGGAGTAATTTTTGCTGGACTTTTTTATTAC
TGGCGTGGTCCGTCGGAAGTATGTATATCAATATCAATATATAATACCAC
CCTGAAATACTCGGATTCGTCAGGCAAGTTACTTGCTGGAGCCTCGCCGT
GACAAAGCTACTTGCTGCCACACCGTCACGTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig954:92308..95489-

>mRNA_A-nodosum_M_contig954.13.5 ID=mRNA_A-nodosum_M_contig954.13.5|Name=mRNA_A-nodosum_M_contig954.13.5|organism=Ascophyllum nodosum dioecious|type=CDS|length=1377bp|location=Sequence derived from alignment at A-nodosum_M_contig954:92308..95489- (Ascophyllum nodosum dioecious)
ATGAGTTGGAATCTTGGCGAAATCGCACGAACTGGGTTTTTTCCTCGCAT
CATGCCCAACGAAGTGGAGAACGATTATTTTGTGGGTGTAGAAAATTCGA
CTTCACGGTCGACGAGGGAAAGGGACGACCGAATCCTTCTCGCGATAAAA
ATTAAGGAACCCCTTCAAGAGCTAGAAGGTGGCGGGGGCGGTGACGCTAT
CGGGACGGGAGAAGACACGAGCGATGAATACAGAGTTGGAGAGTCTGTCA
CACCATATGCCGGAACCGGTCTTATTACAATATCTGACGCAGGGCGGGTA
CAGCAAAATGGAGACACGGGCGAAAGCGTTTCTAGCGCGCTTGAAACCGT
CACAACGAGAAGAGCCGACTTCGCGTGCAACGGACATCTGGGAGGCAACG
GCACAGAAGAGTGGGATCCAGAGGTTGGGCGTAAGCAGCGCAAAGAGCGT
GATCAGTGGCGACGATCGATGTCAATGGGAGCATGCATCTACAGCAGTAG
CTGTAGCCACGGCTCCAATGTCAGTGAAAGCGGCAGCAGTGACGAAGTTT
TTACTAGCGGTATTGCCTGCGATTCGAGCAGGAGAAGTAGCCGTAGAGAT
TTGTATTCAAACCTTAGGCATTCGAAAACTCGCGCCCGAGAAGTATTCCG
TACGACGACCCGAGGAAGTTACGACAAATACCACACCGAAAACGCTCGAT
GTCGGCAAACCAAGTCCAGTGAGAGCACCATACGGTCTTCCACCAGAACG
GAGACTTCGTACGACAAAGAGCGTCGCGCGCAGACTCGCGTATATCACCG
CACTCGACGTCACCGCAAGGTCATCTCTGGACAAAAGCCAGACGCCGCCA
ACGACAATAACATGGTCACCGCGACACTTGTTGGGGAGATGGCTGGGTTG
GGTCGTCAAGCGATGGCGAATGCCGTGCGTATTGCGGTGCGAACTGTAGT
TGACAGCTGGACGGGTGTAGCATCAGTCGCCCGCAAAGCTGTTCGCAGGT
GGAAGCTTCGCTGCGGACTGGACAGGCCAATTCTCCCAATCGCCGCTAAC
AAGAGCAATCTACAAAGGAAGCTGCGCTTGGATGCACCACATGGAGCTCA
GGACCGCAGCCGGCACACGGAACGTGCTTTATTTCGCTCTTTCTTGGGCA
AGAGTACAGGTCCCTCCTTCCCCTTCCTTTCGTGGGGTCAATCGGATGTG
ACCGTCGCAGAGTCAAGGGAGTCGAAACTACAGGGTGTGCACAGAGGGCA
TTCTGTCGTCGCGGAGTTACGCGAGAGCGATCACGAGGTTTGCTATTGGG
TAAGAGACGAAAGAACGAGGGGTCACGGCGGCAATTGTAATTCTCCTCCA
CATTCGTGGGAAAAGGTAGTTGTTTGA
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