mRNA_A-nodosum_M_contig953.32.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig953.32.1
Unique NamemRNA_A-nodosum_M_contig953.32.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig953.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig953contigA-nodosum_M_contig953:251635..255685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size251
Hectar predicted targeting categoryother localisation
Exons2
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870451.7542543-CDS-A-nodosum_M_contig953:251634..2517001680870451.7542543-CDS-A-nodosum_M_contig953:251634..251700Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig953 251635..251700 -
1680870451.7643785-CDS-A-nodosum_M_contig953:255502..2556851680870451.7643785-CDS-A-nodosum_M_contig953:255502..255685Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig953 255503..255685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig953.32.1prot_A-nodosum_M_contig953.32.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig953 251635..255685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig953.32.1

>prot_A-nodosum_M_contig953.32.1 ID=prot_A-nodosum_M_contig953.32.1|Name=mRNA_A-nodosum_M_contig953.32.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=83bp
MPDQFKIVVAELVKILRVKATTPAPLESSCDAPAAGSGAGRDGEGIVEGA
NVTENESEGGKDGSPGRAASGPEKGQEKYHQTG
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mRNA from alignment at A-nodosum_M_contig953:251635..255685-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig953.32.1 ID=mRNA_A-nodosum_M_contig953.32.1|Name=mRNA_A-nodosum_M_contig953.32.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4051bp|location=Sequence derived from alignment at A-nodosum_M_contig953:251635..255685- (Ascophyllum nodosum dioecious)
ATGCCAGATCAGTTCAAGATCGTCGTCGCCGAGTTGGTCAAGATACTGCG
AGTCAAGGCCACCACGCCCGCTCCTCTCGAGTCTAGCTGTGATGCCCCGG
CCGCGGGATCGGGAGCAGGAAGAGATGGAGAGGGCATCGTGGAAGGCGCT
AACGTTACCGAAAACGAGTCTGAGGGTGGAAAGGTGCAGTCATACATACC
ATACCACACCAGACCATACTACTGTACTCGTAGATGTGGAGATAAAAACA
TCTCTCCCAGACATTAGACTATACTGCTGACCCAAGGTTACTACCATTAG
GGAACCCGTTAAAATGCCATGAAGAGGTTGTATTTTTAATTTTAGACCAT
GAAACATTTTTTTTTTACACGTAGTAGAATGTCCCTGCGGACTTGTTGTA
GAAATGGAAATGTATTCATCTTTACTACTTACAATATTGTAACATTGCTT
GTGTTCTAGACTATAAGCCCTTATTGTATAAGGGTCGATGACCACGTGCA
GGATTGGCAACCTTACCCGTTTGATCCATACTCTTGCTACAGTATATGTG
TGACCAGACAAGGGTCGATATCACTATTATTGTCTGTATATTATTATAAA
CATATTTTTATTATGCATTGATTTTGTTTTTGTTTTGTTTTTGTCTCGTG
TCCCTGCATGGCGGTTATTGAAAGTGTACAACATAACGGTGGGTTTCTCC
CCTGATATTGTACTGGTGACCCAATGTTACTACCATCGGGGAACCCGTTT
AAATGCCATGGGGTTTGGTATTTGCAGCCTATGATCCCACCTAAAGTTTT
GACATTTTCCCCCCTGACTGGGGGATGCTCAGAAGGTCTAGATGCGTTCA
GATTTTTCTTTGAACAAGTACTTTCGGGCATCTTGAAAGGGTTTGAAATA
TAGGGAGGTTCGTAGGTACAGCAACGGATTCAGCTGCGAGGACAGGTAGC
AAGGTTGCGCTGAGAAACGTGCATGTGAGTAGACAAGCAGCGGACGCCGG
ACGTAGAGGCCCTGCGCTATTGGGATTTGAGGAAACTTTGTGTGCAACCA
ACCGCGTGCAATAGCATTGCGCGTCTCCCGTTAGGCGGATATGGAATACA
GTACCTTGGTTTTCATTTGTTCAATAATTTCCAAAAAGCTACCCTTGCAT
ACCTTACTGTATGGTTACACATATAACAAGAGTAAGGATCAACCGGGTAA
GGTTGCCAATCCTGCTCGTGGTCAGCTGAACAGGGAAAATTAATACCAGG
TATCATTTTCCCTGTCCCCGTTCGCGCCTGATAATTTGGTCTCGCGAGAC
GGGTTCAGAAGTCCCGTCCCGCGTCAGCCTGCTCATCTCCATACTCAGGC
TGAATCTGGTGCTTACGTACGGGATTCCTCCCGAGTTCCGCGGCGTCGTC
TATTTATTTTTTTAAACCGCAATTGGGTCAGGCCCGGGTTTATCGGGTCA
CGCAATTGCGTACCGAGGGCGTTCACTGCCGAGAGTCCACGGGCACAGGG
CCAGTAAACCTCAAGCTAGTTCCAAACGGGTGCTGCCTTGGCAGGTCACC
ATGGACCAATTAATATGTGGATGTGTGTGTGTGTTTATGTGTGTGTGTGT
TTACGTGTGTGTGTGTGTGTATTTATTAAATTGCACATAACCGCGCAATC
CGGCCCTGTCATCCTTGTCATTCTATTCCACTCGCATTGATCCTCCCAAG
GGGGGATCAATGATACTTGTTACGAAAAACTCTGATCGGACGCGACAAAG
GGGACACACTCTCTCTACTTGTACAAATCTTACTTAAGCCCTGAGCATCT
TGTGCTCCCCCCCCTGCTTCCTTGTTGCTTTCTAGATTATACGGGTTGGC
AGCTACTGAACCATCCCTTTCTTTTCTACATTTTTTTCCCTTTCCACCCG
TGTCTCCCCCGTTTACCGCACGGCGTCTACAACTATTTTGCGGTTTCTTG
CGCTTTTTTGTCTCCCTTCCGCCCTCCCCAATCTTATTCTCGTTCCCGTT
ATCGTCGTCCCCGTGTGTGTGTGTATTTATTAGATTGCACATAACCACGC
AATCCGGCCCTGTCATCCTAGTCATTCTATGCCACTCGCATTGATCCTCC
CAAGGGGGGATCAATGATACTTGTTACGAAAACCTCTGATCAGGCGCGAC
AGAGGGGACACACTCTCTCTTCTGGTACAACTTTTACTTGAGCCCTGAGC
ACCTTGTGTTTCCCCCCCTGCTTCTTTGTTACTCTCTGGATTATCTGGGT
TGACAGCTACTGAACCAACCCTTTCTTTTCTACATTTTTTATACTCTTTC
CACCCGTGTCTCCCCCGTTTCCCGCATGGCGTCTACAAGAGATAATTGTA
CAAGAAGAGAGAGTGTGTCCCTTGTGTCGCGCCTGATCAAAGGTTTTTGT
AACAAGTATCATTGATCCCCGTGGCAGGATCAATGCGAGTGGCATAGAAT
GACTAGGATGACAGGGTCGGATTGCGCGGTTATGTGCAATCTAGTGTGTG
TGTGTTTGCGTGTGTGTGTGTATTTATTAAATTGCACATAACCGCGCAAT
CCGGCCCTGTCATCCTAGTCATTCTATGCCACTCGCATTGATCCTCCCAA
GGGGGGATCAATGATACTTGTTACTGTGTGTGTGGTTGTGTTGTCATCCC
AATTATTCTGGACGTCAGGCTTGTGGACGTACCAGCCGGGGTTACACAGG
AGGAAGGTCACACAGGATTCCTCCACCTTCCTTCTGCAGTGCTTGCCTTA
ATTTTTTTCGCGAGAAGGATGCAGCCGTTCCTTTCTCTCGTCGACCGTGA
AGTCGAATGTTGAGTACTAACGAATTGATCATTCTTCACTTGTTGTGAGG
AAAAACCTCAGTTCGATTGACTGCACCGAGATTCGAACTTGAGTTACCAA
CTGAACCATCCGAGATTTCCCAATTCAACAGTCCCCGGGAAATCCCGCAG
ATTCAGCCAATGGAGATGAGCAGACTGACATCCCGTCTCGCGACCAAATT
CTGCACGCACGGGGACTCTTTTCCCTGTTCAGCTGACCACGAGCAGGATT
GGCAACCTTATCCGGTTGATCCATACTCTGCTATATGTGATGACCATACA
TACATACATACATACATACTACTACAGTAGAAGCATTCCTCTCTGGCACC
CCCAACGAGTTCAACTCGAAAATCTTCGTCCAGAATGTACTTTACTGTAC
TGTCATAGTCGGTAGGCAGGGTGCTATTTTACTGCAGTCAAAGGACTACT
CACTAATGTATTTTGCTATCGATTTGTTGTGCAAACAGTCCGTAGATGCC
TCTTGCTTAGAACGATGCGACGACTGTTACAGTATACCATGTACCAGGTA
CAGTACAGAAACAGTACAGAAATAATCCGTGAAGAGAAAGAAGTATAGTA
TTTAGTATTATTTATTAGTATCGATGGCGTATGAATATGACGGTTTCATA
AATGGACGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACCAGA
TTCAGCCTGAGTATGGAGATGAGCAGGCTGACGCGGGACGGGACGGCTGA
ACCCGTCTCGCGAGACCAAATTCTCAGGCACGTACGGGAACAGGGGGATA
TTCATTTTCCCTGTTCAGCTGACACGAGCAGGATTGGCAACCTTACCCGG
TTGATCCATACTCTGCTATATATGATGACCATACATATAAGTATATATAT
GTACCGTACGGTACGATCGTACTGCTGCTGTACTATTTTTTCATATACTG
TATACAGTAGTAAACTCTGCAGACACGAGAACCCCACGAACACATCGAGA
GGTTCAGGTGTGTACGGCAATTACTTGTTATTACAATGTCGGGACAGCAG
CGGTGTCTTCCTCTCTGATTTCACAGTAGTGTAGATCAAATTGTTTTCTC
GTGGTCTGGAGTTGCTCCCAACCAAAACCCCCTACTGTATACCTGTTACT
GCATATATAATCTGGTACCTGGCGCGTTTATGCAGGATGGCAGTCCCGGA
AGAGCGGCTTCGGGACCGGAGAAGGGGCAGGAAAAATATCATCAGACCGG
C
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Coding sequence (CDS) from alignment at A-nodosum_M_contig953:251635..255685-

>mRNA_A-nodosum_M_contig953.32.1 ID=mRNA_A-nodosum_M_contig953.32.1|Name=mRNA_A-nodosum_M_contig953.32.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=249bp|location=Sequence derived from alignment at A-nodosum_M_contig953:251635..255685- (Ascophyllum nodosum dioecious)
ATGCCAGATCAGTTCAAGATCGTCGTCGCCGAGTTGGTCAAGATACTGCG
AGTCAAGGCCACCACGCCCGCTCCTCTCGAGTCTAGCTGTGATGCCCCGG
CCGCGGGATCGGGAGCAGGAAGAGATGGAGAGGGCATCGTGGAAGGCGCT
AACGTTACCGAAAACGAGTCTGAGGGTGGAAAGGATGGCAGTCCCGGAAG
AGCGGCTTCGGGACCGGAGAAGGGGCAGGAAAAATATCATCAGACCGGC
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