mRNA_A-nodosum_M_contig953.15.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig953.15.1
Unique NamemRNA_A-nodosum_M_contig953.15.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig953.15.1 vs. uniprot
Match: D7FIZ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ6_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 2.900e-82
Identity = 190/452 (42.04%), Postives = 257/452 (56.86%), Query Frame = 1
Query:  454 AARSQSFTTSTKSLLGRCGVLVTTAATFVITVVLSTG---NMTPAVSTTTLFPVGGQSLYASRGRRHDISIVGA---------GRALQEEEDTAVI----YETELQLFLCNPSLVEEENDAYLVDNESVAMALSRILVLGQSDPDDIEVTIKTGPLDAGDDAYMCNTDGMLQWHAKIHYGADDAVALETTPAVMAAKANDFIAYSSSDFKILLSAFINDEYTTNAQAVDVSAEDIVVSNVGWTVTFPSQAPSVREAETTRTLFGFEIGVMDDAGLWNWWVWLVFALLLACFMAPVCCXXLCRRRGDTGATKEELETAQDGRRKGDSPEAVRDPEWGPNELGLEEEEDYHRNQXXXXXXXXXXXXLHDGRGVEPASNRPGRRSGQ------ALIQETGERSTWAQPAQSSSRSPLRSKRRPVARHLNVQGQDEDGGDRGMATSRSKPRQNSPD 1743
            AAR+ S  +S    + R   LV  AA  V TV  S G   + + + + T    VG QSLYAS   R  IS+  A         GR LQEE  T +     Y T+LQ+F+CNPSL  E NDA+LVD  S+A ALS I  + Q+D  DI VTIKT P+D  D +YMC+TDGMLQWHA++ Y A  A + +TTPAV+AA+AND++AYSSS FK LL+ FIN EY    + V++SA+DI++  VGW VTFP++    +E  T  +  G  +G+  D+ LW WWVWL++ALL+AC       XX      +  A ++ L   + GR + +    +R PEWG  EL  E + D +++Q               GRGVEP + RP  R+GQ      A +QE G++S WAQP+ +SSR      + PV R  ++   D+D  D G+   RSK  Q S D
Sbjct:    3 AARASS--SSLNPWVARNWGLVIAAAATVATVAFSLGTTASTSRSGAMTGSARVGQQSLYASPKSRGGISVAQAQRPSSVRPHGRVLQEETPTVITPIVEYGTKLQIFMCNPSLEVEGNDAHLVDEASLAAALSNISGIKQADEGDITVTIKTEPVDVDDVSYMCDTDGMLQWHAQVEYSAAYAGSRDTTPAVLAAQANDYVAYSSSQFKALLAGFINAEYAGEVETVELSADDILIPTVGWIVTFPAEESVTQETHTAGSSDGLAMGIGSDSSLWAWWVWLIYALLVACXXXXXXXXXXXXXADEKEAARDRLIATRKGRGE-EGLAKIRGPEWGITELDFEGDYDAYQSQEMKREYDGA------GRGVEPTAYRPSHRAGQQSVSAQAWMQEAGKKSAWAQPSGNSSRQG--GGQSPVVRRFDI---DDDDADDGVGKLRSKHPQYSFD 440          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig953.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIZ6_ECTSI2.900e-8242.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig953contigA-nodosum_M_contig953:78588..86466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2345
Hectar predicted targeting categorysignal anchor
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_005010.1
Cds size1461
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig953.15.1prot_A-nodosum_M_contig953.15.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig953 79151..86145 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870452.4847965-UTR-A-nodosum_M_contig953:78587..791501680870452.4847965-UTR-A-nodosum_M_contig953:78587..79150Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig953 78588..79150 -
1680870452.558637-UTR-A-nodosum_M_contig953:86145..864661680870452.558637-UTR-A-nodosum_M_contig953:86145..86466Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig953 86146..86466 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870452.4989316-CDS-A-nodosum_M_contig953:79150..793601680870452.4989316-CDS-A-nodosum_M_contig953:79150..79360Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig953 79151..79360 -
1680870452.5113626-CDS-A-nodosum_M_contig953:79577..798391680870452.5113626-CDS-A-nodosum_M_contig953:79577..79839Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig953 79578..79839 -
1680870452.524092-CDS-A-nodosum_M_contig953:80046..802911680870452.524092-CDS-A-nodosum_M_contig953:80046..80291Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig953 80047..80291 -
1680870452.5367074-CDS-A-nodosum_M_contig953:80468..807051680870452.5367074-CDS-A-nodosum_M_contig953:80468..80705Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig953 80469..80705 -
1680870452.5485547-CDS-A-nodosum_M_contig953:85638..861451680870452.5485547-CDS-A-nodosum_M_contig953:85638..86145Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig953 85639..86145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig953.15.1

>prot_A-nodosum_M_contig953.15.1 ID=prot_A-nodosum_M_contig953.15.1|Name=mRNA_A-nodosum_M_contig953.15.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=487bp
MSGAYYDDESSRVRAGRGDDVPRINGGPKPRGVITARVVRSIPTAARSQS
FTTSTKSLLGRCGVLVTTAATFVITVVLSTGNMTPAVSTTTLFPVGGQSL
YASRGRRHDISIVGAGRALQEEEDTAVIYETELQLFLCNPSLVEEENDAY
LVDNESVAMALSRILVLGQSDPDDIEVTIKTGPLDAGDDAYMCNTDGMLQ
WHAKIHYGADDAVALETTPAVMAAKANDFIAYSSSDFKILLSAFINDEYT
TNAQAVDVSAEDIVVSNVGWTVTFPSQAPSVREAETTRTLFGFEIGVMDD
AGLWNWWVWLVFALLLACFMAPVCCCCLCRRRGDTGATKEELETAQDGRR
KGDSPEAVRDPEWGPNELGLEEEEDYHRNQDEKKRDRHGHGHLHDGRGVE
PASNRPGRRSGQALIQETGERSTWAQPAQSSSRSPLRSKRRPVARHLNVQ
GQDEDGGDRGMATSRSKPRQNSPDKRVRSGRHGQSY*
back to top

mRNA from alignment at A-nodosum_M_contig953:78588..86466-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig953.15.1 ID=mRNA_A-nodosum_M_contig953.15.1|Name=mRNA_A-nodosum_M_contig953.15.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7879bp|location=Sequence derived from alignment at A-nodosum_M_contig953:78588..86466- (Ascophyllum nodosum dioecious)
GATTGGTGTAATCAGCGTCAACACTCCAAACAGATTCTGTGGCAGGCTTC TCTAGCAGCGGCGTTTTATCGGCCATCAACCTCATACTTGAAGGGCTAAC ATCGGCAACGGCTCCTCGATCGAGCAGAGGGAGAGGAGAGGGGTACTAAA GACCCCCAACCACCTGGCCTGCAAGTACAACTTGCGACAGCTACAACAGT TTTAGAAACTACGACTGTAGACTATATCTGTATCCAAGATCTACAGCAGC TGCGTTTCTGTATCCGAAGCAGCATCGCGAGGATATCGACATCTCCGCGC GATAGGTTAGCTCAGGGCACAATGAGTGGCGCGTACTATGATGACGAGTC GAGTCGTGTACGTGCGGGAAGAGGTGACGACGTACCGAGGATCAACGGCG GGCCCAAACCGAGAGGCGTCATCACCGCAAGGGTTGTGCGATCGATCCCT ACGGCAGCGAGATCGCAATCTTTCACGACCTCTACAAAGTCGTTGCTAGG TCGATGTGGTGTTCTTGTCACCACTGCGGCTACATTTGTGATTACCGTGG TACTCTCCACCGGCAACATGACTCCGGCTGTTAGCACCACCACACTATTT CCCGTGGGAGGCCAGAGTCTGTACGCGTCTCGCGGTCGGAGGCATGACAT CTCCATCGTCGGAGCCGGGAGAGCACTGCAGGAAGAGGAAGATACTGCCG TCATCTACGAGACTGAACTCCAGCTTTTCCTGTGCAATCCAAGCCTGGTG GAGGAGGAGAACGACGCGTATCTTGTGGACAACGAGAGCGTGGCTATGGC GCTTTCAAGGATCCTCGTGCTGGGGCAGGTGAAATTGTGTTGTTGTACTT CCGAGTTGTCGAGATGGCGCGGTCCTGTATTCAATCAATGTAGGTAAGAG ACCGGCGTCGCTTATTTGGGTATAGGGGCGAAAGACTAATCGAACCATCT AGTAGCTGGTTCCCTCCGAAATTTCCCTCAGGATAGCTGCAATCGTTGTT CAGTTTTATCAGGTAAAGGATTAGAGGCTGCGGGGGAGTAACTCCTCGCC CTATTCTCAAACTTTAAAATGGGTAAAAGACCGGCGTCGGGACGCTCCCA GTCTGGAACGGGTTGGAACTGGAATATTCTCCCGAATCAATGTATTTAAC GACAACAACCTTTCAGTTGGTAACCGAAACCATCTGAAGTTGGGAATCAG TCACACGAACTGGGATTCTAACTCATACAATGCAGCACGTGAGAGCGACT AATTTGTCGTGGGTACACAAAATTCGACCTCAACCGAGGATAGGGACCAG CCCTTCTCGATAAAAAAAAATCTAAGGCATGTACCGCAGTGGGAAGGATG TGTCCTTTCTACTGTTGTGACCCCGGCTGTATTCAATCAATGTATTTAAT CAGTGCTACACATACCAGCAGGTACTGCGGTCCTGTATTCAATCAATGTA TTTAATCAAAAGTATATACGAAATCATACAATTGTTCCGTCATACCACGG GACGGGGTAGCACAGAGTAGTTTGTATTTTGACGAAATTTGTTACCCTTC TAATTATGTGTTGCCCTGTTTAAAGAAAAATCAGACCACACCTAGACCTT CTGAGCATCCCCCGGTATGGGGGGAAAAATGTCAGAACGTTTAGGTGGGA TCAAAAGGCTGCAAATACAAAACCACTTCATGGCATTTAAACAGGTTCCC CGATGCAGATAACATTGGGTCCACAGTTGTACTGTACGTAATTGTGATAA AGTTACTATTACACCACAGGGTAAAAGCCAATTGACCGTTACCACTCGGT AATCAGTCTTTATAACGTAATCGTGTCAAGTCCGCGCTCTCAGCTGTCAG GCAAGAGTTACGTCGTTCGATGATCATGATGCTACACTACAATCAATACA GTGAAGTAACTGTACAACTTTCGGTTTCTCGGTAAGAAAGATATAGATCT GTGTCGGTTGATTTCTAAACGTTTGAACGAATGATAGGAATAACCTCATT TTTCAGCATTTTTTACAATAATAGACAATAGTGCAAATATGATGTACATA TGTACTAATATAATCTTACCATACTTGCTTTTGTTACTACTGAATAATGA TTAATGTACTTGTAAAGTTCCCTCTCTGACCCTATTGAATATCCCTATAT GTCGCCTCCCATCAATTTATATCAATAACTAAGAACCTCACCTATATTCC CATATTAATTTAATTTTCTCTAAGACCATATTACTACACTGTAGTCCAGG ACTCTTCGATAAAAAGGATTGTGGTTTTGGTGTCCCTGCATGGAGATTAA TGTAAGTGTACAGTATAACGGAGGGCTTCCCGATATTATACTGTCGACCC GATGTAGTTACATTGGGGAACCCTTTTGATACCATGAAGAGGTTTTGTCT CTACAGCAAATGTTCCCACCTAAACCTTTAGACACTCTTCCACTTGAGGT GGATGCTCAGAAAGTTTAGATGCGTTCAGATTTTTCTTAAATACTTTATA CATGTTTTTTTCTAATTCTCACATATATCAAAAACCCACCCCGTGGTCAC AAGTAGAGTTTCCTATGTTCTGATTTGGATCCCCATGTATTTCACCATTT ACAGCCTTGCGAGCTTGTTTAAAGAAAAATCTGAAGCTTGTTGTTGAACT TGGTAAAAAAGCCAGGTATGCAAAGCGTGTGCCATGTGGGCCGCTAGTTT TGGTAGTTTTGAACTAAATATATTTGAGTAGCGGGCTGTTACCATGATGT GACATGTTGACCTTTGTATGCATACCTCTTTACAGTGCTCTTCTATCGTT TTCTGGCATATGGCCCTTGTTTTTTTATTTGTTTTTGTTTTCATGCTCTC GTTGTACAGTAGCTCTGCAGATGCTCCTCTGATTTGTCCTGTCCAGTAGA CCATGTCCTGGATTGGCAACCACGTATATTACTGGGTATGTAAGGTCCGA TTGGTCAACACAATCATCTTACTCATCATGCTGTCACAAATGTAAGATAC AGTATGAAATATAAACACCACAAGCGCTACTACTACTGGTAGGTATGTAC ATCCCATTTATTCTGGACATACGTCAGACTTTTGGACGCACCAGCCGGGG TCACACAGGACTTCTCCACCTTCCTTCTGCGGTGCCTCTGCCTTAATTTT GATCGCGAGAAAGATTCAGCTGTCCCTTTCCCTCGTCGACTGTGAACCGT GGAGTAATACTATACGTCAATTTTCCCATATTATCTCCATATCTACCACA CAAGTTGTAGACTTCCTTCATCGGCACCCGTCCTATCTTAGACCCAATAT AACAAATTGAGCTGTATCCTATCTTGTCGTGCATTTTGTAATTGTTGTGT TTTGGTGTCCCTGCATGATGATTAATTTGAATGGACAGTAATGCCATGAA GAGGTTGTATTTTTAATTTTAGACCATGAAACAACAATTTTGTACACTTA TCATATTAGAACCCTGCGGACTTGTAAAAAAATGTTAATGTAACTTATAA TATTAGAACCCTGCGGACTTGTAAAATGTAAATGTATTTCTCTTCACTAA TTACAATTATTGTAACATTTCTGTGTTTTAAGAAAAATCAGAAGCGGCTA GACCTTCTGAGCATCCCCCATTTGGGTTACTGTTCTCTTGTCTTTTTATT TGTTTTTGTTTTCATGCTCTCGTTTTATAGTAGCTTTGTAGATGCTCCTC TGATATTGTCCACAGACCATGGACTGGATTGGCAACCACGTATATTACTG GGTATGTATGTATATGTATGTATGGTCATCACATATAGCAGAGTATGGAT CAACCGGGTAAGGTTGCCAATCCTGCTCGTGGTCAGCTGAACAGGGAAAA TCAATATTCTTCTATCCCTGTGCGTGCCTGAGAATTTGGTCTCGCGAGAC GAGTTCAGCCGTCCCGTCCCGCGTCAGCCTGCTCATCTCCATACTCAGGC TTAATCTGGTGCTTACTTCCGGGATTCCTCCCAAGTTCCGCGGCGGCGTC CATTTATGAAACCGCCATACGCCATCGGGTCAGTCCCGAGTTTACTGGGT CGCGCAATTGCGTACCGATGGCATTCACTGCCGAGAGTCCGCCGGCACAA GGCCAGTAAACATCAAGGTAGTTCCGAACGAGTTCTGCCTTGGCAGGTCA CCATGGACCAGTTAATATTCGCCTCTCTTTCCCACACCCACTATTGGTAG TTGAAAGTACCGGCTATGTAAGGTACAAATGTAAGATAATAGTATGAAAT ACAAACACCACAAGCGCTACTGGTAGGTATGTACGGTGGAGTAATATACT ATGCGTCAATTTTCCCATATGAATTTTGTAATTGTTGTGTTTTGGTGTCC CTGCATGATTAATTTGGATGGACAGTAATGCCATGAAGAGGTTGTATTTT TAATTTTAGACCATGAAACAACAAGTAGTAAAATGTCCCTGCGGACTTGT TGTAAAATGTAAAAGTATTTCTCTTCACCAATTACAACTATTGTAACATT GCGTGTAAAATCAGAACGCGTCTAGACCTTCTGAGCATCCCCCATTTGGG TTACTGTTCCCGTGTTTTATTCTTTGCTTTTTGTTTTCATGCTCTGGTTG TACAGTAGCTTCGTAGATGCTTCTCTGCCGATCTTGTGCTGTCCAGTAGA CATGTACTGGATTGGCAACCACGTATATTACTGTGTATGTGAGGTCCGAT TGGCCAACACAATCATCTTACTCATCATGCTGTCACAGATGTAAATGTAT TTCTCTTAACCAATTACAATTATTGTAACATTGCGTGTATTTATAAAGAA AAATCAGAACGCGCCCAAGTCAGGGTAGTCAGGGGGGAAAAATTTCTAGC CTATAGTTAATTGTATAAAGCTCGATGGCACTATCACTGTATATTAATAC GAACCTATTTTATTATGTACTAAAAAGGTTTTGTTTTGTTTTTGTCTGGT GTCCCTGCATGGCGATTAATGTAAGTGTACAGCATAACGGTGGGTTTCTC CCCGACATTATACTGTTGACCCAATGTTACTACCATCGGGAGCCCGTTTA AATGCCATGAAGAGGTTTGTATTTGCAGCCTATGATGCCACCTAAACGTT TTGACATTTTCCCCCCTGACTGGGGGATGCTCAGAAGGTCTAGATGCGTT CAGATTTTTCTTAGAACGATTAATTTGTTAGTACACAAAATTCGACTTCA TCGTCGACGAGGGAAAAGAACGGCTGAATCCCTCTCGCGAGAAAGATGAA GGTAAGCACCGCAGAAGAAGGGAGGATGAGAAATCCTGTGTGACCACGGC TGGTACGGTACGGTACGTCCACAAGCCTGACGTCCAGAATAAATGGGAAG ACTACACATAACACTCTTCATACAAAGAGAAAACGATAATGGCACAGAAT ATTCGGAAAAAGCGACATCTCCAAAGAAACAAAAAAAGGAAGAATGTCAA GGTATGATGATACTCCCTGCTGGGCTGCACCGAGATTTTATTTTCCGTTT GGACTCAAATCAAGTAATTTCAACGCTAGGGGGTTTCAAATTTGCTGGTT TCGCTGTGGGGTCGGTGTGTAGTGCATCAATTTTCTGTCGAAAGTTGCTA ATTTTAATGTCGCCTATTTAGGACTTGGCGGGCGACCAGGCCAACTCGTC CAACAAGTTTTTTGTTTCGAGTAAAATCTACTTTTTTCTCCGAAGTCCCC TCCGATGTGACCCCCCAATCGCAACGTTTGAACACGTTCTCCCGTCCGTA TTACACGTTAGTCCGACCCTGACGACATCGAGGTGACCATCAAGACGGGC CCCTTAGATGCTGGAGACGACGCGTACATGTGTAACACCGACGGCATGCT TCAGTGGCACGCCAAGATCCACTATGGCGCCGACGATGCCGTGGCGCTTG AGACGACGCCGGCTGTTATGGCTGCCAAGGCCAACGACTTCATCGCCTAC TCTAGCAGCGACTTCAAAATTCTCCTTAGCGCGTTCATCAATGACGAGGT GCAGCCACGTTCCCCGACCTTTGTTCCGAGGACTAGACACGGTTGGTGCT CGGCAGTGTCTCCAATCAACTACTCGAGCGAAGTCCCTGACTCGGCTATC GCTGTCCCATACATACATACATATATATACATACTGACCCATACAATGTC CTCGCGCCTTCCTCACGGCAAGCAGTACACGACGAACGCTCAAGCTGTGG ACGTCTCCGCCGAAGACATAGTTGTCAGCAATGTTGGGTGGACCGTGACT TTCCCGTCACAGGCTCCGAGCGTACGGGAGGCGGAAACTACCAGAACCCT TTTTGGTTTCGAGATCGGCGTGATGGATGACGCCGGTCTTTGGAATTGGT GGGTATGGCTCGTCTTCGCCCTCCTACTGGCCTGTTTCATGGCACCCGTC TGCTGCTGCTGCTTGTGCAGGTGAGATCAGATTGTAAAAATAAAATGGTG GCGTTTCGTCGCTCAGAGTTGTTGGTTAGAGAGCCAAGTCACTACTACAG TAACTTCGATGAGTCGGCTTCTGCCGTGCGCAACCTCCTTTACAACCGCT CGCGCGAACATGACCGTTCGAGCTACGAAAACGTTTCAGAAGTGTGGGCC GAACCCACCATGGATGCTTCCTTGCAGGCGACGAGGTGACACGGGCGCAA CGAAGGAGGAGCTGGAGACTGCGCAAGACGGTCGCAGAAAAGGCGACAGC CCCGAGGCGGTTCGTGATCCCGAGTGGGGCCCGAATGAGCTAGGCTTGGA AGAGGAAGAGGACTACCATCGAAACCAGGATGAGAAGAAGAGGGATCGTC ACGGTCACGGTCACCTCCACGACGGTAGGGGCGTCGAGCCCGCGTCAAAC CGACCTGGGCGCCGTAGCGGTCAAGCCTTGATACAGGAGGTAACGTCTAC TTCTAATTTCAAGTACTGTGCCGTAGCACACCATTCTTACCATCGCCGAA CTATCAACTCGTAAGACAGAGTTGAAAGTCAAAAGAATGAATGGTCGGTT CCTAAAAGGCATTAAAGTACAATTTCCTCTAGTACAGTATATATATATAT CACGTTTGCGTTACTAGCGTGTTTTTGTATCAACGCGTGTCTTCCTGCGA AAACAGACTGGGGAACGGTCGACGTGGGCACAGCCTGCACAGTCTTCATC GAGAAGCCCTCTCAGGTCCAAGAGACGTCCTGTTGCGCGTCATTTGAATG TACAAGGCCAAGACGAGGATGGAGGCGATCGTGGCATGGCGACATCCCGC AGCAAGCCAAGGCAAAACAGCCCCGACAAGCGTGTCCGATCTGGACGACA TGGACAGTCTTATTAACAAGAAGTAGCTAACGGCATTTGATTGTTCACAC AGTTTGTTTCAGGGCCGACTACAGACAGTACACAAGATTTTAACTACTCT ATAGAGGTACGTACGCCTTGTTTTGTTTTAAGAGAAACATGCCAGGATGC GATCAACGGGGCCTACCTACGCGATGCAGATGCAGCACATGCATTTCTGT CGTATCTTGTCCCGATTTTACCGTTATTTTTGTTATTTTTGTTATTTTTG TTTCCCATCTTGGGCGAGGAAACTTTTCTTTTGAAATTTAAGATAAAACC TTGTACTGTAGAACGTTCACCGCAGTCTTTTTGGGTGTAGAGTTGAAATC ACGTGTGAAATCATGTGTGTCCTCTCTCTTGTGGAGGGGGAGAAAAATGT TAAACGTTCCCTTGCGGAGCAGATGTCGTAGTCGTAGTCGTGGTCCACGA GATTGTAATGTAAGTACTGTATGTTGGAGGAGGCGTGTTGTGCTCAACAG CTTTTGGTATATTCTGCTGATATCTTACATATGGGGCTTAGACTATTCGG TAGTTCAATAAGCTTTTGCTGGGACGCGT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig953:78588..86466-

>mRNA_A-nodosum_M_contig953.15.1 ID=mRNA_A-nodosum_M_contig953.15.1|Name=mRNA_A-nodosum_M_contig953.15.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1461bp|location=Sequence derived from alignment at A-nodosum_M_contig953:78588..86466- (Ascophyllum nodosum dioecious)
ATGAGTGGCGCGTACTATGATGACGAGTCGAGTCGTGTACGTGCGGGAAG
AGGTGACGACGTACCGAGGATCAACGGCGGGCCCAAACCGAGAGGCGTCA
TCACCGCAAGGGTTGTGCGATCGATCCCTACGGCAGCGAGATCGCAATCT
TTCACGACCTCTACAAAGTCGTTGCTAGGTCGATGTGGTGTTCTTGTCAC
CACTGCGGCTACATTTGTGATTACCGTGGTACTCTCCACCGGCAACATGA
CTCCGGCTGTTAGCACCACCACACTATTTCCCGTGGGAGGCCAGAGTCTG
TACGCGTCTCGCGGTCGGAGGCATGACATCTCCATCGTCGGAGCCGGGAG
AGCACTGCAGGAAGAGGAAGATACTGCCGTCATCTACGAGACTGAACTCC
AGCTTTTCCTGTGCAATCCAAGCCTGGTGGAGGAGGAGAACGACGCGTAT
CTTGTGGACAACGAGAGCGTGGCTATGGCGCTTTCAAGGATCCTCGTGCT
GGGGCAGTCCGACCCTGACGACATCGAGGTGACCATCAAGACGGGCCCCT
TAGATGCTGGAGACGACGCGTACATGTGTAACACCGACGGCATGCTTCAG
TGGCACGCCAAGATCCACTATGGCGCCGACGATGCCGTGGCGCTTGAGAC
GACGCCGGCTGTTATGGCTGCCAAGGCCAACGACTTCATCGCCTACTCTA
GCAGCGACTTCAAAATTCTCCTTAGCGCGTTCATCAATGACGAGTACACG
ACGAACGCTCAAGCTGTGGACGTCTCCGCCGAAGACATAGTTGTCAGCAA
TGTTGGGTGGACCGTGACTTTCCCGTCACAGGCTCCGAGCGTACGGGAGG
CGGAAACTACCAGAACCCTTTTTGGTTTCGAGATCGGCGTGATGGATGAC
GCCGGTCTTTGGAATTGGTGGGTATGGCTCGTCTTCGCCCTCCTACTGGC
CTGTTTCATGGCACCCGTCTGCTGCTGCTGCTTGTGCAGGCGACGAGGTG
ACACGGGCGCAACGAAGGAGGAGCTGGAGACTGCGCAAGACGGTCGCAGA
AAAGGCGACAGCCCCGAGGCGGTTCGTGATCCCGAGTGGGGCCCGAATGA
GCTAGGCTTGGAAGAGGAAGAGGACTACCATCGAAACCAGGATGAGAAGA
AGAGGGATCGTCACGGTCACGGTCACCTCCACGACGGTAGGGGCGTCGAG
CCCGCGTCAAACCGACCTGGGCGCCGTAGCGGTCAAGCCTTGATACAGGA
GACTGGGGAACGGTCGACGTGGGCACAGCCTGCACAGTCTTCATCGAGAA
GCCCTCTCAGGTCCAAGAGACGTCCTGTTGCGCGTCATTTGAATGTACAA
GGCCAAGACGAGGATGGAGGCGATCGTGGCATGGCGACATCCCGCAGCAA
GCCAAGGCAAAACAGCCCCGACAAGCGTGTCCGATCTGGACGACATGGAC
AGTCTTATTAA
back to top