mRNA_A-nodosum_M_contig951.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig951.4.1
Unique NamemRNA_A-nodosum_M_contig951.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig951.4.1 vs. uniprot
Match: A0A6H5K8W7_9PHAE (EGF-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8W7_9PHAE)

HSP 1 Score: 655 bits (1691), Expect = 1.280e-234
Identity = 315/444 (70.95%), Postives = 351/444 (79.05%), Query Frame = 1
Query:   13 QWVLPPAAGLWLIALMGGTSLFFLSPAEAGCCPNACSGHGTCTVDDACVCYSNWQSGEDVSETGDCSDRTCPFEIAWADYPDESGAHHLYAECANKGICDRILGQCACFEGYEGKACARMSCPNDCSGNGRCIYADDLPYGVNLGSFYSDQDNSTDYRGELGDTNGNDAVTFDYYGWDQGKSRMCKCDPGYEGVDCSYRSCPVGNDVMIERLNRAAAVKYQKQAICLYSSGAAFS---------------------------------------EERFTTTPINLDGTTATPAA-VTAAYIEDALEGLPGGVIDSVSVDVEGDSDGSGILGVSIDNYPCDMLIVVTFDGTEVQGNQHLLEVEWRPCGDGCTPKVDGLPLATIDTRYDALPYTHTAHRSYVQQVQAADYVSYVCGGRGKCDYTTGDCACFTGYYGLHCGTQTALI 1224
            +W L PA    L  ++   S+F L  AEAGCCPNACSGHGTCTVDDACVCYSNWQ+GE+  ETGDCSDRTCP+EIAW+D+PD+SGAHH YAECANKG CDR  G+C CFEGYEGK CARMSCPNDCSG+GRC++ADDLPYGVNLGSFY DQ+N+TD+ GELGDTNGNDAVTF+Y+GWD+GK+RMC+CDPGYEGVDCSYRSCP GNDVM+ERLNR A+VKYQKQAICLYSSG AFS                                       EERFTT PINLDG   T    VTA YI+ ALEGLP GVIDSV VDV  ++ GS I G  I+ YPCD LIVVTFDG +VQGNQHLLEVEWRPCGDGCTPK+DGLPL+TIDT++D LPYT  AHRSYVQQ+Q+ADY SYVCGGRGKCDYTTG+CACFTGYYGLHC TQTALI
Sbjct:    4 RWTLLPAT---LFGVLVSLSVF-LPSAEAGCCPNACSGHGTCTVDDACVCYSNWQNGEEFFETGDCSDRTCPYEIAWSDFPDDSGAHHTYAECANKGTCDRTTGECVCFEGYEGKGCARMSCPNDCSGHGRCMFADDLPYGVNLGSFYHDQNNNTDHLGELGDTNGNDAVTFEYHGWDEGKTRMCRCDPGYEGVDCSYRSCPQGNDVMVERLNRVASVKYQKQAICLYSSGTAFSGTEFWSWDYNANNPIVQRYSALSLNFTGQTFALTFTSAKEERFTTIPINLDGDGYTTMPYVTADYIKSALEGLPNGVIDSVQVDVAYNATGSVIAGEVIEEYPCDELIVVTFDGAQVQGNQHLLEVEWRPCGDGCTPKLDGLPLSTIDTQFDNLPYTIGAHRSYVQQIQSADYESYVCGGRGKCDYTTGECACFTGYYGLHCETQTALI 443          
BLAST of mRNA_A-nodosum_M_contig951.4.1 vs. uniprot
Match: A0A835ZF98_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF98_9STRA)

HSP 1 Score: 357 bits (917), Expect = 3.350e-114
Identity = 202/434 (46.54%), Postives = 252/434 (58.06%), Query Frame = 1
Query:   31 AAGLWLIALMGGTSLFFLSPAEAGCCPNACSGHGTCTV--DDACVCYSNWQSGEDVSETGDCSDRTCPFEIAWADYPDESGAHHLYAECANKGICDRILGQCACFEGYEGKACARMSCP-----NDCSGNGRCIYADDLPYGVNLGSFYSDQDNSTDYRGELGDTNGNDAVTFDYYGWDQGKSRMCKCDPGYEGVDCSYRSCPVGNDVMIERLNRAAAVKY-----QKQAICLYSSGAAFSE----------ERFTTTPINLDGTTATPAAVTAAYIEDALEGLPGGVIDSVSV-----------DVEGDSDGSGILGVSIDNYPCDMLIVVTFDGTEVQGNQHLLEVEWRPCGDGCTPKVDGLP---LATIDTRYD-ALPYTHTAHRSYVQQVQAADYVSYVCGGRGKCDYTTGDCACFTGYYGLHCGTQTAL 1221
            AA + L A + G +   L  A  GCCPNACSGHG+C+     AC CY NWQSGE   E GDC++RTCP+EIAWAD P   G HH YAECANKGICDR  G+C CF GYEGKAC RMSCP     NDCSG+GRC++A+D+PYGVN+GS     D        LGD+NGNDA TF YY WD  ++R+C CD  +EGVDC  RSCP G+DVM    ++  ++          A  L + G + +E          ER TT PI +D   A  A   A  ++ ALE LPGGVID+V V           +      GS  L  ++ +    + I V F G  VQG Q+LLEVEW+ C +GCTP++ G+    LA  + R   +  Y       Y+         +Y CGGRGKCDYT+G+C CF G+ GL CG QTAL
Sbjct:    5 AAAVALAAAILGINTVVL--AAGGCCPNACSGHGSCSAGASAACYCYPNWQSGEMAGEAGDCAERTCPYEIAWADAPGSGGEHHQYAECANKGICDRTSGECNCFAGYEGKACGRMSCPMDKDGNDCSGHGRCLFANDVPYGVNVGSATQLLDTF------LGDSNGNDAETFTYYNWDNERTRLCVCDAEWEGVDCGKRSCPKGDDVMDTNGDQVQSILLIADPGSATANFLAADGVSDAEFALTFTTLTGERLTTGPITIDLGAA--ATTLATDVKTALEALPGGVIDTVDVVATLGMPTWNANTYWTLSGSP-LAPTVTDLNAGVGIYVKFSGKNVQGKQNLLEVEWKECLEGCTPRLAGIQESALALTNARTTGSYGYARVIDTKYLSSTATHVNTAYTCGGRGKCDYTSGECQCFDGFVGLACGEQTAL 427          
BLAST of mRNA_A-nodosum_M_contig951.4.1 vs. uniprot
Match: C4B7Q7_OCHDN (Tubular mastigoneme protein n=1 Tax=Ochromonas danica TaxID=2986 RepID=C4B7Q7_OCHDN)

HSP 1 Score: 292 bits (748), Expect = 9.250e-93
Identity = 168/393 (42.75%), Postives = 207/393 (52.67%), Query Frame = 1
Query:  106 CPNACSGHGTCTVDDACVCYSNWQSGEDVSETGDCSDRTCPFEIAWADYPDESGAHHLYAECANKGICDRILGQCACFEGYEGKACARMSCPNDCSGNGRCIYADDLPYGVNLGSFYSDQDNSTDYRGELGDTNGNDAVTFDYYGWDQGKSRMCKCDPGYEGVDCSYRSCPVGNDVM-----------------IERLNRAAAVKYQKQAICLYSSGAAFSEERFTTTPINLDGTTATPAAVTAAYIED---ALEGLPGGVIDSVSVDVEGDSDGSGILGVSIDNYPCDML-IVVTFDGTEVQGNQHLLEVEWRPCGDGCTPKVDGLPLATIDTRYDALPYTHTAHRSYVQQVQAADYVSYVCGGRGKCDYTTGDCACFTGYYGLHCGTQTAL 1221
            C N CSGHGTC+ DD C CY NW  G    ++GDCSDR CP+E+AW D PD + A H YAECAN+GIC+R  G+C CF+GYEGK C R +CPN CSG+G C Y ++L +G     +      S  Y  E       D  TF Y+GWD  K R C CDP Y  VDCS R CP GNDV+                 I+ +N+   ++ Q  A+   S       E FTT PI  D +          ++ D   AL  LP  VID VSV    D             Y  D L + +TF G  VQG Q+LL VE   C DGCTPK+ G+ + T+          +    S + +V AADY S+ CG RGKCDY TG C CFTGY G +C T T L
Sbjct:   20 CDNNCSGHGTCSTDDVCECYDNWGVGLS-HDSGDCSDRICPYELAWVDTPDNTVAFHKYAECANRGICNRETGECQCFDGYEGKGCQRSTCPNACSGHGTCEYIEELAFGETWNDY------SKQYFIE-------DPKTFPYHGWDNRKIRTCVCDPTYGDVDCSKRLCPYGNDVLDIQDNSIITNYQIQQIRIKAINQLQGLRTQTFALTFKSK----LNETFTTYPIVFDDSDLND------FVHDVQLALLKLPNRVIDGVSVAANRD-------------YATDYLNLNITFTGNNVQGKQNLLVVESYECSDGCTPKITGIDVQTL----------YNQKHSNISEVLAADYYSFECGRRGKCDYNTGLCNCFTGYTGDNCNTMTTL 365          
BLAST of mRNA_A-nodosum_M_contig951.4.1 vs. uniprot
Match: A0A7S0L985_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L985_9EUKA)

HSP 1 Score: 290 bits (742), Expect = 1.080e-91
Identity = 168/404 (41.58%), Postives = 212/404 (52.48%), Query Frame = 1
Query:   79 FLSPAEAGCCPNACSGHGTCTVDDACVCYSNWQSGEDVSETGDCSDRTCPFEIAWADYPDESGAHHLYAECANKGICDRILGQCACFEGYEGKACARMSCPNDCSGNGRCIYADDLPYGVNLGSFYSDQDNSTDYRGELGDTNGNDAVTFDYYGWDQGKSRMCKCDPGYEGVDCSYRSCPVGNDVMIERLNRAAAVKYQKQAICLYSSGAAFSE-----------------ERFTTTPINLDGTTATPAAVTAAY-----IEDALEGLPGGVIDSVSVDVEGDSDGSGILGVSIDNYPCDMLIVVTFDGTEVQGNQHLLEVEWRPCGDGCTPKVDGLPLATIDTRYDALPYTHTAHRSYVQQVQAADYVSYVCGGRGKCDYTTGDCACFTGYYGLHCGTQTALI 1224
            F++  +A C  NACSGHG C     C C+ NW  G     +GDCS+R CPFE+AW D PD  G HH YAEC+NKGIC+R  G+C CF GYEGK C R SCPNDCSG+GRC Y +D+P+G     + +       +  +       D  TF YYGWD  K+R C+CDP Y  VDCS R C  GNDVM +R +     +YQ Q +   +  +                     E FTT PIN    T         +     IE+ALE LP  VID+V V            GV   N+   + + +TF G  VQG Q+LL V    CGDGC+PK+ GL L  ++T+              + ++  AD+ SY CG RGKCDYTTG C CF GY GL C T   L+
Sbjct:   11 FVAAVQAAC-DNACSGHGKCGAKGICDCFDNWGIGLGHL-SGDCSERICPFELAWVDTPDSVGNHHRYAECSNKGICNRGSGECECFPGYEGKGCQRTSCPNDCSGHGRCKYIEDMPFGQVQADYQNAVTGIDSFLPQ-------DPHTFPYYGWDSYKTRGCECDPEYGDVDCSKRLCQHGNDVMDQRDDLLDPHQYQVQKLNFLADQSYLENYQNRDRTFALTFKSKLNETFTTLPINFYSDTGGTGGTDGLHEFVLDIENALERLPNRVIDNVEVHA----------GVDATNH---IHVNITFVGDNVQGPQNLLTVRSYLCGDGCSPKLVGLELE-LETQT-------------ITELTPADFNSYECGRRGKCDYTTGQCQCFAGYTGLSCSTIACLV 378          
BLAST of mRNA_A-nodosum_M_contig951.4.1 vs. uniprot
Match: A0A7S3JQM4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQM4_9STRA)

HSP 1 Score: 291 bits (746), Expect = 2.170e-91
Identity = 186/441 (42.18%), Postives = 228/441 (51.70%), Query Frame = 1
Query:  106 CPNACSGHGTCTVDDACVCYSNWQSGEDVSETGDCSDRTCPFEIAWADYPDESGAHHLYAECANKGICDRILGQCACFEGYEGKACARMSCPNDCSGNGRCIYADDLPYGVNLGSFYSDQDNSTDYRGELGDTNGNDAVTFDYYGWDQGKSRMCKCDPGYEGVDCSYRSCPVGNDVMIERLNRAAAVKYQKQAICLYSSGA-----------------------------------AFS-------EERFTTTPINL---DGTTA-TPAAVTAAYIEDALEGLPGGVIDSVSVDVE----------------GDSDGSGILGVSIDNYPCDMLIVVTFDGTEVQGNQHLLEVEWRPCGDGCTPKVDG---LPLATIDTRYDAL---PYTHTAHRSYVQQVQAADYVSYVCGGRGKCDYTTGDCACFTGYYGLHCGTQTALI 1224
            CPN+CSGHGTC  DD C CY+NW  G+   E GDCSDR CP++IAWA   ++ G  H YAECA  GICDR  G+C CFEG+ GK C  M+CPNDCSG+G C Y +D  YGV  G +Y   D S      LG    + AV      W  GK R+C+CD GY  +DCS R CP GNDV+ ERLN   A+KYQKQ   L ++GA                                   +F+        + +TT P+ L   DG    T     A  +E+ALE LP  VID V V+ +                   DG+G +  S+  YP  +   V F GT V G Q+LLEV    CGDGCTP ++    L  AT  T  D +    Y      S+V +   ADY S+ CG RGKCDY+TG C CF GY G  C TQTALI
Sbjct:   17 CPNSCSGHGTCGSDDTCTCYANWLMGD--QEGGDCSDRACPYQIAWATATNKGGNVHTYAECAGVGICDRTKGECDCFEGFTGKGCGVMTCPNDCSGHGTCEYLEDYGYGVVWGDYY---DGSIATLTGLGT---DAAVIPQPPDWATGKMRICRCDAGYTDLDCSRRMCPKGNDVLDERLNLVTALKYQKQNFTLVAAGAKGDGIVYDDANNVVCNLENDPDIDRPGCWQDFVGRSFALKFTSKLNQSYTTIPLVLNVSDGAKINTEMNNFATVVENALESLPNYVIDDVDVECDLIYLQANTTAYRTKTFQPVDGTGSI-YSLAAYPS-LTCTVEFIGTTVMGPQNLLEVVADTCGDGCTPMLNNSVNLKTATNITVEDYIGTKDYITDDLFSFVAEDVRADYNSFECGRRGKCDYSTGLCECFEGYTGDRCQTQTALI 447          
BLAST of mRNA_A-nodosum_M_contig951.4.1 vs. uniprot
Match: F0YDW6_AURAN (EGF-like domain-containing protein n=3 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDW6_AURAN)

HSP 1 Score: 288 bits (736), Expect = 1.200e-90
Identity = 167/400 (41.75%), Postives = 211/400 (52.75%), Query Frame = 1
Query:   97 AGCCPNACSGHGTCTVDDACVCYSNWQSGEDVSETGDCSDRTCPFEIAWADYPDESGAHHLYAECANKGICDRILGQCACFEGYEGKACARMSCPNDCSGNGRCIYADDLPYGVNLGSFYSDQDNSTDYRGELGDTNGNDAVTFDYY-GWDQGKSRMCKCDPGYEGVDCSYRSCPVGNDVMIERLNRAAAVKYQKQAICLY-------------------SSGAAFSE---ERFTTTPINLDGTTA-TPAAVTAAYIEDALEGLPGGVIDSVSVDVEGDSDGSGILGVSIDNYPCDMLIVVTFDGTEVQGNQHLLEVEWRPCGDGCTPKVDGLPLATIDTRYDALPYTHTAHRSYVQQVQAADYVSYVCGGRGKCDYTTGDCACFTGYYGLHCGTQTALI 1224
            A  CPN+CSGHGTC  DD C CY +W  G+   E GDCSDR CP+++AW+  PD  G  H YAECA  GICDR  G C CFEGY GK C   +CPNDCSG+G C YA+D P+G   G +Y+ + NS    G        D VT      WD GK ++C C+PGY  +DCS R CP GNDV+ ERLN +        +I  +                   S    F+    + +TT P+ L+ T     +   +  +  AL  LP  VID V VD         +  +    YP  +  +V F G  V G Q+LLEVE   C DGCTPK++     T      ++P       S+V++   ADY SY CG RGKCDY+TG+C CF GY G  C  QTALI
Sbjct:   14 AASCPNSCSGHGTCGSDDTCTCYQDWVMGD--QEGGDCSDRKCPYQVAWSASPDRDGNIHTYAECAGVGICDRSTGDCECFEGYTGKGCGIQTCPNDCSGHGACTYAEDAPFGTVWGDYYTAKSNSLTGLGT-------DPVTLAQAPAWDSGKVKLCVCEPGYTDIDCSRRMCPKGNDVLDERLNLSNNWARGATSIAGFNGQNSDNWDPDCFKDFLNKSFALTFTSKMNQSYTTKPLVLNETNVFNISKAFSGDVRKALVELPNYVIDDVDVDCSLQYVHQNLTSL----YPA-LSCLVAFTGDTVMGPQYLLEVETDECLDGCTPKLENPGNVT------SMPDIF----SFVKEQVTADYNSYECGRRGKCDYSTGECECFEGYMGDRCQMQTALI 389          
BLAST of mRNA_A-nodosum_M_contig951.4.1 vs. uniprot
Match: Q9Y0F7_THAWE (Sexually induced protein 2 n=1 Tax=Thalassiosira weissflogii TaxID=1577725 RepID=Q9Y0F7_THAWE)

HSP 1 Score: 285 bits (728), Expect = 1.640e-89
Identity = 167/411 (40.63%), Postives = 214/411 (52.07%), Query Frame = 1
Query:   70 SLFFLSPAEAGCCPNACSGHGTCTVDDACVCYSNWQSGEDVSETGDCSDRTCPFEIAWADYPDESGAHHLYAECANKGICDRILGQCACFEGYEGKACARMSCPNDCSGNGRCIYADDLPYGVNLGSFYSDQDNSTDYRGELGDTNGNDAVTFDY-YGWDQGKSRMCKCDPGYEGVDCSYRSCPVGNDVM-----IERLNRAAAVKY-----QKQAICLYSS--------GAAFS-------EERFTTTPINLDGTTATPAAVTAAYIEDALEGLPGGVIDSVSVDVEGDSDGSGILGVSIDNYPCDMLIVVTFDGTEVQGNQHLLEVEWRPCGDGCTPKVDGLPLATIDTRYDALPYTHTAHRSYVQQVQAADYVSYVCGGRGKCDYTTGDCACFTGYYGLHCGTQTALI 1224
            SL  L       CPN+CSGHGTC VD+ C CY  W  G + +  GDCSDR CPFE+AW D P+  G  H YAECANKGICDR   +C CF GYEGK+C R SCPNDCSG+G C Y  DL +G+    +Y    N+    G  G        TFD+ Y WD+ ++R C CD G++G+ C+ R CP GNDVM      +  +      Y     Q Q + LY +          +F+        E + T PI+ D    T  +V   YIE AL+ LP  VID V V V+   + +G++            I VTF G  VQG QH LE+    C +GCTP++ G  L  I T  D    T       V+      + S+ CG RGKCDY +G C CF+G+ G  C   TAL+
Sbjct:    8 SLTLLVGYSKAACPNSCSGHGTCGVDEVCTCYPGW--GTNGNAGGDCSDRFCPFELAWVDNPNRDGGVHRYAECANKGICDRETAECDCFPGYEGKSCGRQSCPNDCSGHGTCEYMKDLEFGIVYNEYYDGSTNALSGLGAGG-------KTFDHEYFWDRDRARACICDAGWQGLSCNMRMCPYGNDVMDVIPGFDENSLLGMPGYGNEVAQVQTVTLYDAELDNLNFNSKSFAIQFTSKLNETYVTQPISWD----TTDSVLDGYIETALKKLPNKVIDDVDVSVDSSVNANGVV------------IDVTFTGAAVQGKQHKLEILQDACEEGCTPRITG--LTNIRTFSDTTLST-------VEISTIGSHNSFECGRRGKCDYDSGLCKCFSGFTGDTCSILTALV 384          
BLAST of mRNA_A-nodosum_M_contig951.4.1 vs. uniprot
Match: K0R988_THAOC (EGF-like domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R988_THAOC)

HSP 1 Score: 280 bits (716), Expect = 1.290e-87
Identity = 166/399 (41.60%), Postives = 211/399 (52.88%), Query Frame = 1
Query:  106 CPNACSGHGTCTVDDACVCYSNWQSGEDVSETGDCSDRTCPFEIAWADYPDESGAHHLYAECANKGICDRILGQCACFEGYEGKACARMSCPNDCSGNGRCIYADDLPYGVNLGSFYSDQDNSTDYRGELGDTNGNDAVTFDYYGWDQGKSRMCKCDPGYEGVDCSYRSCPVGNDVM-----IERLNRAAAVKY-----QKQAICLYSS--------GAAFS-------EERFTTTPINLDGTTATPAAVTAAYIEDALEGLPGGVIDSVSVDVEGDSDGSGILGVSIDNYPCDMLIVVTFDGTEVQGNQHLLEVEWRPCGDGCTPKVDGLPLATIDTRYD-ALPYTHTAHRSYVQQVQAADYVSYVCGGRGKCDYTTGDCACFTGYYGLHCGTQTALI 1224
            CPN CSGHGTC +D+ C CY  W  G D    GDCSDR CPFE+AW D P   G  H YAECANKG C+R  G+C C+ GYEGK C R SCP  CSG+G C Y  DL +G+    +Y   D STD    LG        TF  + +D  +SRMC CD G++G+ C  R CP GND+M      +  +      Y     Q Q + L+ +        G  F+        E F T PI  D    T  AV A YIE AL  LP GVID V+V V+ + + SG++            + VTF G  VQG QH LE+    C  GC+P++ G  LA + T  D AL  T     S+VQ      + S+ CG RGKC+   G+C+CF G+ G  CG+ +AL+
Sbjct:   24 CPNGCSGHGTCGIDEVCQCYPGW--GTDGHAGGDCSDRFCPFELAWVDNPTREGDRHSYAECANKGECNRKSGECVCYAGYEGKGCGRQSCPGQCSGHGTCEYVKDLSFGIVHNEYY---DGSTDALSGLGIG----GRTFQDHSFDSDRSRMCVCDAGWDGLACQTRMCPYGNDIMDVIPGFDENSLLGMPGYGNEYAQVQTVTLFDANLDNSNFDGQTFAVKFTSKLNETFVTQPIAWD----TTDAVLAGYIESALLKLPNGVIDDVAVTVDSNDNNSGVI------------LDVTFTGESVQGKQHKLEILADKCEVGCSPRITG--LANLRTFSDTALSQT----LSHVQISTPGSHNSFECGRRGKCNRKNGECSCFEGFTGSACGSLSALV 391          
BLAST of mRNA_A-nodosum_M_contig951.4.1 vs. uniprot
Match: B5YNE7_THAPS (Sig2-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNE7_THAPS)

HSP 1 Score: 280 bits (715), Expect = 1.470e-87
Identity = 165/397 (41.56%), Postives = 208/397 (52.39%), Query Frame = 1
Query:  106 CPNACSGHGTCTVDDACVCYSNWQSGEDVSETGDCSDRTCPFEIAWADYPDESGAHHLYAECANKGICDRILGQCACFEGYEGKACARMSCPNDCSGNGRCIYADDLPYGVNLGSFYSDQDNSTDYRGELGDTNGNDAVTFDYYGWDQGKSRMCKCDPGYEGVDCSYRSCPVGNDVM--IERLNRAAAVKY--------QKQAICLYSS--------GAAFS-------EERFTTTPINLDGTTATPAAVTAAYIEDALEGLPGGVIDSVSVDVEGDSDGSGILGVSIDNYPCDMLIVVTFDGTEVQGNQHLLEVEWRPCGDGCTPKVDGLPLATIDTRYDALPYTHTAHRSYVQQVQAADYVSYVCGGRGKCDYTTGDCACFTGYYGLHCGTQTAL 1221
            CPN+CSGHGTC VD+ C CY  W  G + +  GDCS+R CPFE++W D P + G  H YAEC++KG CDR+ G C CF GYEGKAC R SCP DCSG+G C Y  DL YG     +Y     +    G  G        +F+   WD+ ++R C CDPG+ G++C+ R CP GNDVM  I   +  +++          Q Q + LY +        G +F+        E F T PI  D    T   V A YI  AL+ LP  VID V V+VE    GS + GV ID         V F G  VQG QH LE+   PC DGC+P++ G  L  I T  D    T       V+      + S+ CG RGKCD  TG C CF+G+ G  C   TAL
Sbjct:   21 CPNSCSGHGTCGVDEVCTCYPGW--GMNGAPGGDCSERFCPFELSWVDNPTKDGERHRYAECSDKGTCDRLNGNCVCFPGYEGKACDRQSCPGDCSGHGTCEYMKDLEYGTVYNEYYDGSSVALSGLGAGG-------KSFNMGLWDEDRARACVCDPGWTGLECNKRMCPYGNDVMDVIPGFDEHSSIGLPGYGNEVAQVQTVTLYDADLNNLNFDGKSFAIRFTSKLNETFVTQPIMWD----TDDDVLAEYIATALKKLPNKVIDDVDVNVE---SGSNVAGVVID---------VAFTGAAVQGKQHKLEILQDPCDDGCSPRITG--LTNIRTFSDTTLST-------VEISTIGSHNSFECGRRGKCDQKTGMCLCFSGFTGDTCNILTAL 383          
BLAST of mRNA_A-nodosum_M_contig951.4.1 vs. uniprot
Match: A0A482RZM9_9ARCH (EGF-like domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZM9_9ARCH)

HSP 1 Score: 253 bits (647), Expect = 2.420e-78
Identity = 155/348 (44.54%), Postives = 190/348 (54.60%), Query Frame = 1
Query:  235 IAWADYPDESGAHHLYAECANKGICDRILGQCACFEGYEGKACARMSCPNDCSGNGRCIYADDLPYGVNLGSFYSDQDNSTDYRGELGDTNGNDAVTFDYYGWDQGKSRMCKCDPGYEGVDCSYRSCPVGNDVMIERLNRAAAVKYQKQAICLYSSGAAFSE-----------------ERFTTTPINL-DGTTATPAAVTAAYIEDALEGLPGGVIDSVSVDVEGDSDGSGILGVSIDNYPCDMLIVVTFDGTEVQGNQHLLEVEWRPCGDGCTPKVDGLPLATIDTRYDALPYTHTAHRSYVQQVQAADYVSYVCGGRGKCDYTTGDCACFTGYYGLHCGTQTALI 1224
            +AW D PD+ G  H YAECAN+GIC+R  G+C CF GYEGKAC R SCPNDCSG+GRCIY ++LPYG            + DY G   D +  D  TFD Y WD+ K+R C CDP Y  VDCS R CP G DVM +R +      YQ Q I +  S  +F++                 E FTT PI L DG T     +   ++E ALE LP GVID+V V        +G   V    Y   + + VTF G  VQG QHLL V+   CGDGC+PK+ G+              TH       +Q QA+D+ SY CG RGKCDY+TG C CF GY G  CGT + L+
Sbjct:    2 LAWIDKPDKLGRRHAYAECANRGICNRDNGECECFPGYEGKACQRSSCPNDCSGHGRCIYMENLPYGAV----------APDY-GAYTDFSVQDPKTFDNYFWDRSKTRGCLCDPEYGDVDCSKRMCPYGTDVMDQRSDVTVDGLYQVQQIQIKVSTKSFNDSSTAGDTFALTFKTKLNETFTTAPIPLFDGRTDFRQFI--LHVEQALERLPNGVIDNVDV--------AGSYSV----YSNVVNLNVTFVGNTVQGPQHLLTVKDYLCGDGCSPKLSGVE-------------THPGSNLIFEQ-QASDFNSYECGRRGKCDYSTGVCNCFAGYSGNTCGTISCLV 310          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig951.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8W7_9PHAE1.280e-23470.95EGF-like domain-containing protein n=2 Tax=Ectocar... [more]
A0A835ZF98_9STRA3.350e-11446.54EGF-like domain-containing protein n=1 Tax=Tribone... [more]
C4B7Q7_OCHDN9.250e-9342.75Tubular mastigoneme protein n=1 Tax=Ochromonas dan... [more]
A0A7S0L985_9EUKA1.080e-9141.58Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S3JQM4_9STRA2.170e-9142.18Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0YDW6_AURAN1.200e-9041.75EGF-like domain-containing protein n=3 Tax=Aureoco... [more]
Q9Y0F7_THAWE1.640e-8940.63Sexually induced protein 2 n=1 Tax=Thalassiosira w... [more]
K0R988_THAOC1.290e-8741.60EGF-like domain-containing protein n=1 Tax=Thalass... [more]
B5YNE7_THAPS1.470e-8741.56Sig2-like protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A482RZM9_9ARCH2.420e-7844.54EGF-like domain-containing protein n=1 Tax=archaeo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig951contigA-nodosum_M_contig951:71893..76101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LDD6
PFAMsEGF_2
Model size1227
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons6
Evalue7.09e-236
EggNOG OGsKOG1225@1|root,KOG1225@2759|Eukaryota
Ec32 ortholog descriptionSecreted EGF-like domain protein OCM2
Ec32 orthologEc-25_001650.1
Descriptionregulation of canonical Wnt signaling pathway involved in osteoblast differentiation
Cds size1227
COG categoryL
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig951.4.1prot_A-nodosum_M_contig951.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig951 71893..76101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870450.6935983-CDS-A-nodosum_M_contig951:71892..720691680870450.6935983-CDS-A-nodosum_M_contig951:71892..72069Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig951 71893..72069 +
1680870450.7182312-CDS-A-nodosum_M_contig951:73033..731831680870450.7182312-CDS-A-nodosum_M_contig951:73033..73183Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig951 73034..73183 +
1680870450.7307425-CDS-A-nodosum_M_contig951:74208..745621680870450.7307425-CDS-A-nodosum_M_contig951:74208..74562Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig951 74209..74562 +
1680870450.742798-CDS-A-nodosum_M_contig951:74998..750351680870450.742798-CDS-A-nodosum_M_contig951:74998..75035Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig951 74999..75035 +
1680870450.7533991-CDS-A-nodosum_M_contig951:75155..753821680870450.7533991-CDS-A-nodosum_M_contig951:75155..75382Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig951 75156..75382 +
1680870450.764284-CDS-A-nodosum_M_contig951:75819..761011680870450.764284-CDS-A-nodosum_M_contig951:75819..76101Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig951 75820..76101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig951.4.1

>prot_A-nodosum_M_contig951.4.1 ID=prot_A-nodosum_M_contig951.4.1|Name=mRNA_A-nodosum_M_contig951.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=409bp
MTRSQWVLPPAAGLWLIALMGGTSLFFLSPAEAGCCPNACSGHGTCTVDD
ACVCYSNWQSGEDVSETGDCSDRTCPFEIAWADYPDESGAHHLYAECANK
GICDRILGQCACFEGYEGKACARMSCPNDCSGNGRCIYADDLPYGVNLGS
FYSDQDNSTDYRGELGDTNGNDAVTFDYYGWDQGKSRMCKCDPGYEGVDC
SYRSCPVGNDVMIERLNRAAAVKYQKQAICLYSSGAAFSEERFTTTPINL
DGTTATPAAVTAAYIEDALEGLPGGVIDSVSVDVEGDSDGSGILGVSIDN
YPCDMLIVVTFDGTEVQGNQHLLEVEWRPCGDGCTPKVDGLPLATIDTRY
DALPYTHTAHRSYVQQVQAADYVSYVCGGRGKCDYTTGDCACFTGYYGLH
CGTQTALI*
back to top

mRNA from alignment at A-nodosum_M_contig951:71893..76101+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig951.4.1 ID=mRNA_A-nodosum_M_contig951.4.1|Name=mRNA_A-nodosum_M_contig951.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4209bp|location=Sequence derived from alignment at A-nodosum_M_contig951:71893..76101+ (Ascophyllum nodosum dioecious)
ATGACCCGCTCACAGTGGGTCTTGCCGCCAGCAGCAGGTCTCTGGCTGAT TGCTCTCATGGGAGGCACTTCGCTTTTCTTCTTGTCCCCGGCTGAGGCTG GCTGCTGCCCCAACGCGTGCTCGGGGCACGGAACCTGCACGGTCGACGAT GCGTGTGTGTGCTACAGTAACTGGCAGGTGATGGCGGTGTTTCTGGAAAC GACTACGCGCGGCAGCATCAGTCGCCGTCTTCGTTATAGCTCCTCACGGC GCGACCCGGAGATCAGACGCCATCCTTTTTAAGCGCAGTCTTGAAACCGT AAACATAAAATCAAATAAAGGATCATGCATGTTTGCAGTACAAATCTCTG TCCAAAGACATTCGCTTTTTTAAGGCAGCACGGGCGGGGAAGAAAATCAA CAACCGGTGTTATAGTAGACGGACCCTGCGCAATCGGACCACTCCAGTTA AAGTGGTGCTCATGAAACCTATTTTTATTTCACTCTTGGAGGAAGTCACT TTCAGCGCTAAAAAAAAGAGACATTACAAATAGTATAAACAATACAACAA GCGTACAATATTGGTGGCTCGTGCGAGTATCGGGGCCGGAATTCGGTTAA TACGTAGTTACTAATTAGTTGTATTTTTGGTTACGGCGCCGTATTAGCAG CTTCAAATTATCCACGCACATCTTCGCCTCTTCGGAGCTGCACGCCTCTT GCGCGTGTGCTTCCGCCGCGCAGTTAAGGGTAGCCTCCCTACTCAAGTCC TGACCTCAGTGTACCACGCCCCCCCACGCCCCCCCCACTCCATAAAGACA CGCACACCGACCTCCTTCCTTGTCCACAGCCCACTCCCTTCCGTCCTTTG AACTGCATTTTACCGGGCACATCGAATCACTCGTAACACTCGACGAGCAG ACGTCCTCGAATCAGTTACCACCGCGGTAAGCCTTGGAACCCCGCTACTC CACTCCATTCCCACTCCAGTCCACGTGGCGGGTACCACCGCGTTTACGGT GTCCACTTGTTGTACGTATCTTGATTGTTCTGCGTCATATCTCCAATGAC ATGTTTTCATCATCCATGTCACGGAAGAACTATAACTTGAGTTATTCACA ATCAACCACCGCTTGTTGTCTTTGCTCTCAAATCAAATAAGAGTGGAGAA GACGTCTCAGAGACCGGCGATTGCTCGGACCGCACTTGCCCCTTCGAGAT TGCCTGGGCCGACTACCCCGACGAGTCGGGGGCTCATCACCTGTACGCGG AGTGTGCCAACAAGGGTATCTGCGACCGGATCCTCGGCCAGGTGGGTCTG ACCGGGGCTTATTTGTGCAGCTTGTACTACTCCGTAAGGAAGGAAGTGAG TGGGTCTTCTCTCGCCTCGAGGAGGAGGAGCTGTAGCTAGGAGATGTGGC CACGTTTTCAGGGGGAAGTATCGGCAACAGGACATTCTCCAGCGCCTTGG TTCGTTGCAGTTTGAGATAGATGTAGTTTAAACCTTCTCTTCTACGAGGA GTCTCGGGAGGATTCTCCGTCAAGGAGCTGAACAGCGACTTTTCTGTGAT TAACTTACCCATTCTCCCTCTCACACACACACACATGTTATAGGCGCACG TCAACTAGGGTAGGTCAGCTGCAGTATCATATTTGCTCTGCCAGCGTTAT TATTTAGCCGGAGGCCTTTCTATTTCCTTGCTGTAGAGGTAAGTAGCCTT GGCGTATCTTCAGCAGCTCCTCGCTTGCGCGCAGTCCGCGCGCTCAAAAC CGCACTCAGATAACTCTCGCTGAGGATGGGGTGATTTGAATCGCCTTCGT GCTTCAGCAATCTTGGATATCCCAGCAACAGAATGCGTCGCACCCTCTGC GGTGGACGTGATTCACCGCGAGGGTCAAGATAGGTTTCCGTTATAAATGG CGTTATGATGGAGGGAAAGTCCCCCCCCCACCACCACCTCTTCGCCAAAA AAATGCAAAATTTAAAAAAAGGGGGGGGGGAGGGGATGGGAGGGGCCACC TCTTTATTAGTATTAACAGCGCGGAAACTACCCAATCCCTGATGAAAAGA TGTGCAATCTTTGTCCACAGCCTTCGTCGGGGCCCTGTACGCTTTATCCG CTGAAGAAAAGCCCCTCCCATTTATCACGTAGTACGTGTGGACGGCAACC AGACGTGGCCTGAGAGAAACATTATCCCCCTTCCTGGCAACAAACAACAA TGAAATCACCAACAACAACATCAATCGACATGACAACACCTCGATACCTC GATAGCTCGATACCTTGGTCGCGGCGGCTGTTCTTACCACTGCCGCCGCC GCTGCTGCTGCTGCAGTGCGCGTGCTTTGAAGGCTACGAGGGCAAAGCTT GCGCCCGCATGTCGTGCCCCAACGACTGCTCCGGGAACGGGCGGTGCATA TACGCTGACGACCTCCCGTACGGGGTGAACCTAGGGTCCTTCTACAGCGA CCAGGACAACTCCACAGACTACAGAGGCGAGCTGGGCGACACCAACGGAA ACGACGCTGTGACTTTCGACTACTACGGCTGGGATCAGGGCAAGAGTCGC ATGTGCAAGTGCGACCCGGGGTACGAGGGCGTGGATTGCTCCTATCGCTC TTGCCCTGTGGGCAACGATGTCATGATAGAGCGCCTCAATCGTGCAGCTG CTGTCAAGTACCAGAAGCAGGTACGCGCGCTTGGGTTTCCAAGCTTTTGG GGGGGAGTTCGAGAGTGGGGAGCAGTTTCCCGACTACGCACCGAGTCATT TCATTTGATTACTGTAAAACGGTGATTTTGTCGACGCAGGAGGTACCCTC CGTTGCTTTCCTTTCAGCGAAAAATATAAAGGCAAAAAAAACAACTAAAC ACATCGCATCTTCACACATCATCCTACTCTTGGTTTTGCTGTTGTTTTCT CCTCCGTGAGCGTCGTTTTGAGAGCTCTGGCTCACGGCAACGCTTGCGTA CTTCACCTCTCAAATTCTACAGCAAACAGAGTCGTCGTCCTCAACCTTCG CCCTCCTCTCCACCCCGCCGTCCCGTACCGACCCGGGTTTTCAGCGCCAA CACCAACAAAATCCCCACGGTTTCCCCCCCACCTCCCACCCGCGACCCCC TCGCAGGCTATCTGCCTGTACAGCTCCGGCGCCGCGTTCTCCGGTCAGAA CTGGAACGACTGGAACAACGGCGTCTGGATTGGGGGGGCACCTCGCCAGA AGAAGGCCCTCGCCGCAAACTTCACAGGCCAGACGTTTGCGCTCACCTTC ACCTCCGCTCGAGAAGAGCGCTTCACGACGACGCCGATCAACCTCGACGG CACCACAGCGACCCCCGCCGCGGTAACCGCTGCGTACATCGAGGACGCCC TCGAGGGACTGCCCGGCGGCGTGATTGACTCCGTGTCCGTGGATGTGGAG GGCGACTCGGACGGCTCCGGCATCCTGGGCGTGTCGATCGATAATTACCC GTGCGACATGCTGATCGTGGTCACCTTCGACGGCACCGAGGTTCGAGCGT CGTCGTGTGTTGTGTGCGTACGCGCACGCGTCTCTCTGTGCGTGCTGTGT GCTGTGTGAGCGTGCGTGCGCGTACAGAGGTACTGCTCATTGCACCAATC TGCTGGTGGCTTTTTCTTGCGCGTTAACGGATACAGTACCCGAGCGACAG TACTAAGCATTGGACTCCTGCTGTATATAGTGTATAGTGTATAGTGTATG GTGTATGGTGTATAGTGTATAGTGCTATTGATATATTTTAACGAGAATGG GGTAGAAGCAAAAACGCCACATTCTACACAATGCCGCGACTTCCATCTCC CCCCCCCATCCACCAGTCTTCGACCCGTGTTCGACCCGTGCCCTCCCTGC CCGCCAAAGCCTCTCTGGTTGAACAATCTATCCCCGACCCCCTTTGGGGT GCCACCCCCCGCCTTGCCCTCACTCAGGTCCAAGGCAACCAGCACCTCCT GGAGGTGGAGTGGCGACCCTGCGGCGACGGCTGCACTCCCAAGGTCGACG GGCTCCCCCTGGCGACAATCGACACGCGCTACGACGCTCTGCCCTACACC CACACGGCGCACCGATCGTACGTCCAGCAAGTTCAGGCAGCGGACTACGT GTCCTACGTCTGCGGCGGGCGGGGCAAGTGCGATTACACCACGGGAGATT GCGCGTGCTTCACGGGGTACTATGGCCTCCACTGCGGAACGCAGACGGCG CTCATCTGA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig951:71893..76101+

>mRNA_A-nodosum_M_contig951.4.1 ID=mRNA_A-nodosum_M_contig951.4.1|Name=mRNA_A-nodosum_M_contig951.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1227bp|location=Sequence derived from alignment at A-nodosum_M_contig951:71893..76101+ (Ascophyllum nodosum dioecious)
ATGACCCGCTCACAGTGGGTCTTGCCGCCAGCAGCAGGTCTCTGGCTGAT
TGCTCTCATGGGAGGCACTTCGCTTTTCTTCTTGTCCCCGGCTGAGGCTG
GCTGCTGCCCCAACGCGTGCTCGGGGCACGGAACCTGCACGGTCGACGAT
GCGTGTGTGTGCTACAGTAACTGGCAGAGTGGAGAAGACGTCTCAGAGAC
CGGCGATTGCTCGGACCGCACTTGCCCCTTCGAGATTGCCTGGGCCGACT
ACCCCGACGAGTCGGGGGCTCATCACCTGTACGCGGAGTGTGCCAACAAG
GGTATCTGCGACCGGATCCTCGGCCAGTGCGCGTGCTTTGAAGGCTACGA
GGGCAAAGCTTGCGCCCGCATGTCGTGCCCCAACGACTGCTCCGGGAACG
GGCGGTGCATATACGCTGACGACCTCCCGTACGGGGTGAACCTAGGGTCC
TTCTACAGCGACCAGGACAACTCCACAGACTACAGAGGCGAGCTGGGCGA
CACCAACGGAAACGACGCTGTGACTTTCGACTACTACGGCTGGGATCAGG
GCAAGAGTCGCATGTGCAAGTGCGACCCGGGGTACGAGGGCGTGGATTGC
TCCTATCGCTCTTGCCCTGTGGGCAACGATGTCATGATAGAGCGCCTCAA
TCGTGCAGCTGCTGTCAAGTACCAGAAGCAGGCTATCTGCCTGTACAGCT
CCGGCGCCGCGTTCTCCGAAGAGCGCTTCACGACGACGCCGATCAACCTC
GACGGCACCACAGCGACCCCCGCCGCGGTAACCGCTGCGTACATCGAGGA
CGCCCTCGAGGGACTGCCCGGCGGCGTGATTGACTCCGTGTCCGTGGATG
TGGAGGGCGACTCGGACGGCTCCGGCATCCTGGGCGTGTCGATCGATAAT
TACCCGTGCGACATGCTGATCGTGGTCACCTTCGACGGCACCGAGGTCCA
AGGCAACCAGCACCTCCTGGAGGTGGAGTGGCGACCCTGCGGCGACGGCT
GCACTCCCAAGGTCGACGGGCTCCCCCTGGCGACAATCGACACGCGCTAC
GACGCTCTGCCCTACACCCACACGGCGCACCGATCGTACGTCCAGCAAGT
TCAGGCAGCGGACTACGTGTCCTACGTCTGCGGCGGGCGGGGCAAGTGCG
ATTACACCACGGGAGATTGCGCGTGCTTCACGGGGTACTATGGCCTCCAC
TGCGGAACGCAGACGGCGCTCATCTGA
back to top