mRNA_A-nodosum_M_contig95.6.3 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig95.6.3
Unique NamemRNA_A-nodosum_M_contig95.6.3
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig95.6.3 vs. uniprot
Match: A0A6H5JUF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUF4_9PHAE)

HSP 1 Score: 365 bits (938), Expect = 2.040e-118
Identity = 177/262 (67.56%), Postives = 208/262 (79.39%), Query Frame = 3 
Query:  501 GLRNARLYVDSNRLSDGVSSVYPLSTSSPSFPFYVNTTDDDGDEWARTRAKMIHSSRMAQGVSPRGAGSFDRAVARSNLLSGNYSSEKPFTSFAVNSWERWNPSAFAIQEGETYTVSVPGEQYWTDGRIRSDANGYHLHYDAIDACWVAVGRCQGYLGGSKPRVAPPRARWMQLVCGIGDFIFLAREALSGHERYLPLRDAALQDSLLPIGRNLTFLANYTGELICFANDAEGLYGNNRASLNVTVIRESWPPSGN-MEEPY 1283
            GL N+   VDSNRLSDG SSV PLST+SPSFP Y N TDD G+E +R  A +  +SR+ QGV+ RGAGSF+ AVAR N+L  +YSSEKP  +F V++W RWNPSAFAIQ+GETY V VPGEQYW DGRIR+DA GY  +YDA+DACWVA GRC+ YL GS+PRV    ARWM+LVCGIGDF+   REA++G ERYLP+   +LQ SL+P+GRNLTF+A  TGEL+CFANDAEGLYGNNRASLNVTV RESWPP G  +EE Y
Sbjct:  165 GLPNSPFSVDSNRLSDGFSSVSPLSTTSPSFPLYRNDTDDSGNEPSRYWANLTMASRLEQGVATRGAGSFETAVARYNVLQESYSSEKPSVTFPVHAWRRWNPSAFAIQQGETYAVQVPGEQYWEDGRIRADAAGYSTYYDAVDACWVANGRCRSYLHGSQPRVPAQYARWMELVCGIGDFVTALREAMTGEERYLPIDGESLQASLMPVGRNLTFVAAATGELVCFANDAEGLYGNNRASLNVTVTRESWPPDGTYVEENY 426
[Close]
BLAST of mRNA_A-nodosum_M_contig95.6.3 vs. uniprot
Match: D8LCK3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK3_ECTSI)

HSP 1 Score: 308 bits (788), Expect = 5.120e-99
Identity = 145/208 (69.71%), Postives = 170/208 (81.73%), Query Frame = 3 
Query:  663 SSRMAQGVSPRGAGSFDRAVARSNLLSGNYSSEKPFTSFAVNSWERWNPSAFAIQEGETYTVSVPGEQYWTDGRIRSDANGYHLHYDAIDACWVAVGRCQGYLGGSKPRVAPPRARWMQLVCGIGDFIFLAREALSGHERYLPLRDAALQDSLLPIGRNLTFLANYTGELICFANDAEGLYGNNRASLNVTVIRESWPPSGN-MEEPY 1283
            +SR+ QGV+ RGAGSF+ AVAR N+L  +YSSEKP  +F V++W RWNPSAFAIQ+GETY V VPGEQYW DGRIR+DA GY  +YDA+DACWVA GRC+ YL GS+PRV   RARWM+LVCGIGDF+   REA+ G ERYLP+   +LQ SL+P+GRNLTF+A  TGEL+CFANDAEGLYGNNRASLNVTV RESWPP G  +EE Y
Sbjct:    2 ASRLEQGVATRGAGSFETAVARYNVLQESYSSEKPSVTFPVHAWRRWNPSAFAIQQGETYAVEVPGEQYWEDGRIRADAAGYATYYDAVDACWVANGRCRSYLHGSQPRVPAHRARWMELVCGIGDFVRALREAMPGEERYLPIDGESLQASLMPVGRNLTFVAAATGELVCFANDAEGLYGNNRASLNVTVTRESWPPDGTYVEENY 209
[Close]
BLAST of mRNA_A-nodosum_M_contig95.6.3 vs. uniprot
Match: A0A7S2D7Z9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D7Z9_9STRA)

HSP 1 Score: 223 bits (567), Expect = 4.420e-64
Identity = 119/259 (45.95%), Postives = 159/259 (61.39%), Query Frame = 3 
Query:  501 GLRNARLYVDSNRLSDGVSSVYPLSTSSPSFPFYVNTT--DDDGDEWARTRAKMIHSSRMAQ---GVSPRGAGSFDRA-VARSNLLSGNYSSEKPFTSFAVNSWERWNPSAFAIQEGETYTVSVPGEQYWTDGRIRSDANGYHLHYDAIDACWVAVGRCQGYLGGSKPRVAPPRARWMQLVCGIGDFIFLAREALSGHERYLPLRDAALQDSLLPIGRNLTFLANYTGELICFANDAEGLYGNNRASLNVTVIRESWPP 1259
            GL N    VD+NR SDG+S+V PL+ +SPS P+Y  +   D+ G      R    H ++++Q   G++ RGAG   R   A   ++ GN     P  +F V++  RWNPSAFAIQ  ETY V V G Q W DG IR+DA+GY  HYDA+  C VA GRC+ YL   K  +     RW QL+CG+G++++  +EA +  +R+L L +    DS+  +G N TF A +TGEL+CFANDA GLY NN  +LNVTV R SWPP
Sbjct:   85 GLPNLPFTVDTNRQSDGISTVSPLTMTSPSLPYYTESAFFDEFGVTSVENRRTHFHLTQLSQEEQGIAERGAGDAARENAAYKRVMRGNLE-YFPNATFGVHADTRWNPSAFAIQAEETYQVEVRGAQDWIDGLIRTDADGYDAHYDAVSRCHVAAGRCRSYL---KQPLRLKEGRWFQLICGVGNYVWKLQEAAAEADRFLRLMEDEFSDSVFAVGGNHTFRATHTGELVCFANDANGLYFNNAGALNVTVTRLSWPP 339
[Close]
BLAST of mRNA_A-nodosum_M_contig95.6.3 vs. uniprot
Match: A0A7S2DJM6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DJM6_9STRA)

HSP 1 Score: 220 bits (561), Expect = 9.540e-64
Identity = 118/263 (44.87%), Postives = 163/263 (61.98%), Query Frame = 3 
Query:  501 GLRNARLYVDSNRLSDGVSSVYPLSTSSPSFPFYVNTTDDDGDEWARTRAKMIH-----SSRMAQGVSPRGAGSFDRAVARSNLLSGNYSSEK-----PFTSFAVNSWERWNPSAFAIQEGETYTVSVPGEQYWTDGRIRSDANGYHLHYDAIDACWVAVGRCQGYLGGSKPRVAPPRARWMQLVCGIGDFIFLAREALSGHERYLPLRDAALQDSLLPIGRNLTFLANYTGELICFANDAEGLYGNNRASLNVTVIRESWPP 1259
            G+ N    VD++R SDG SSV PL+T+SPSFP++ ++   D    + T  ++ H     +S++ QG++P G  + +R VA +N      +++      P T+FAV +  RWNPSAFAIQ GE Y V V G Q W D  IR  A+GY  HYD++  C VA GRC+ YL   K  +     RW +L CGIG+F++  +EA +G  R +PL +    ++L P+G NLTF A +TGEL+CFAND +GLY +NR  LNVTV R SWPP
Sbjct:   49 GIPNLPHTVDADRASDGFSSVSPLTTTSPSFPYFADSAFFDDFGVSNTVHRLEHWRQVVASQVEQGIAPWGGSTRERDVAAANCAEALAATDGENYYLPNTTFAVAAALRWNPSAFAIQSGENYRVEVRGPQDWVDNSIRVGADGYDAHYDSVSRCHVAAGRCRPYL---KRPLRCRVGRWYELTCGIGNFVWKLQEAANGTARIMPLSEDEFSNTLFPVGANLTFTAMHTGELVCFANDNDGLYYDNRGVLNVTVTRLSWPP 308
[Close]
BLAST of mRNA_A-nodosum_M_contig95.6.3 vs. uniprot
Match: A0A7S2RJF8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJF8_9STRA)

HSP 1 Score: 213 bits (542), Expect = 5.120e-61
Identity = 114/272 (41.91%), Postives = 157/272 (57.72%), Query Frame = 3 
Query:  480 GSEPGSSGLRNARLYVDSNRLSDGVSSVYPLSTSSPSFPFY--------VNTTDDDGDEWARTRAKMIHSSRMAQGVSPRGAGSFDRAVARSNLLS--GNYSSEKPFTSFAVNSWERWNPSAFAIQEGETYTVSVPGEQYWTDGRIRSDANGYHLHYDAIDACWVAVGRCQGYLGGSKPRVAPPRARWMQLVCGIGDFIFLAREALSGHERYLPLRDAALQDSLLPIGRNLTFLANYTGELICFANDAEGLYGNNRASLNVTVIRESWPPSG 1265
            GS     GL N    VD+NR SDG+SSV PL+T+SP+FP Y              D     +  A  I   +  QG++ +GAG+ +   A    ++  G  S  KP   F V + E WNPS F IQ+ E Y + V  +Q W DG I + A+GY   +DA+  C+VA GRC+ YL   + R+A   A+W QLVCGIG+++   R+   G +RY+P+R+     +L  +G N TF +++TGEL+CFANDA GLY NN+  +NVTV R SWPP G
Sbjct:   47 GSASDPRGLPNMPFTVDTNRESDGISSVSPLTTTSPAFPQYEVSDLYAQYGIVSPDDLTKRQEHAADIKYQQNEQGIAGKGAGAREVEAAAYQRMTRPGFLSDPKPSRQFRVQANETWNPSGFPIQQYEVYRIEVEEDQRWVDGLIETTADGYVARFDAVSQCYVAAGRCRAYLK-QRLRLANAGAKWFQLVCGIGNYVTRLRDVSGGKDRYMPIREDEFMSTLFQVGSNTTFNSSFTGELVCFANDAYGLYWNNKGYVNVTVSRVSWPPLG 317
[Close]
BLAST of mRNA_A-nodosum_M_contig95.6.3 vs. uniprot
Match: A0A7S3NLN9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLN9_9STRA)

HSP 1 Score: 205 bits (521), Expect = 3.250e-58
Identity = 115/258 (44.57%), Postives = 152/258 (58.91%), Query Frame = 3 
Query:  489 PGSSGLRNARLYVDSNRLSDGVSSVYPLSTSSPSFPFYVNTTDDDGDEWARTRAKMIHSSRMAQGVSPRGAGSFDRAVARSNLLSGNYSSEKPFTSFAVNSWERWNPSAFAIQEGETYTVSVPGEQYWTDGRIRSDANGYHLHYDAIDACWVAVGRCQGYLGGSKPRVAPPRARWMQLVCGIGDFIF-LAREALSGHERYLPLRDAALQDSLLPIGRNLTFLANYTGELICFANDAEGLYGNNRASLNVTVIRESWPP 1259
            PG +   N    VD +R +DG SSV  L+T+S SFP   +   D          K++  S   QGV+ R  GS++  ++    L  +     P   F VN+  RWNPSAFAIQ GETYT+ V  +  W D  IR  ANGY   YD +  C+VA G+C+  L G+ PR   P ARW +LVCGIGDF++ L + A +  ERYLPLR++ L  +   +G   +FLAN+TGEL+CFANDA+ LY NNR S+ + V R SWPP
Sbjct:   28 PGLNKRGNFPFEVDGDRSADGFSSVSVLTTTSSSFPLDTSEPKDPIARKEHADEKLL--SEKDQGVAGRWDGSYEAEMSAVRRLRDDELGPPPSKLFYVNASLRWNPSAFAIQNGETYTIRVE-DTAWLDNYIRVGANGYEAKYDVVSQCYVAAGQCRPSLAGAVPRF--PSARWFELVCGIGDFVWKLQQVADATLERYLPLRESELIQTFFSVGTGRSFLANFTGELVCFANDADALYWNNRGSIAINVSRTSWPP 280
[Close]
BLAST of mRNA_A-nodosum_M_contig95.6.3 vs. uniprot
Match: A0A7S1XUQ3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUQ3_9STRA)

HSP 1 Score: 194 bits (494), Expect = 3.540e-54
Identity = 108/261 (41.38%), Postives = 152/261 (58.24%), Query Frame = 3 
Query:  501 GLRNARLYVDSNRLSDGVSSVYPLSTSSPSFPFYVNTTDDD-GDEWARTRAKMIHSSRMAQGVSPRGAGSFDRA------VARSNLLSGNYSSEKPFTSFAVNSWERWNPSAFAIQEGETYTVSVPGEQYWTDGRIRSDANGYHLHYDAIDACWVAVGRCQGYLGGSKPRVAPPRARWMQLVCGIGDFIFLAREALSGHERYLPLRDAALQDSLLPIGRNLTFLANYTGELICFANDAEGLYGNNRASLNVTVIRESWPPS 1262
            GL N    VD+NR++DG+SS  P S SSPSFP Y +   +D G    R  A ++ +SR  QG++  GAG   R       VAR N  +  + + KP  +F V++ + WNPS+ AIQ+G TY +SV     W+DG I +D  GY   Y+A   C+ A  +C  +L   K R     A+W +LVCG+ D  +   +     +RY+PLR+  + ++L  +G   T +A +TGELICFANDA+G Y NN  S+NVTV RE WPP+
Sbjct:   40 GLPNMPFTVDTNRVADGISSTSPYSVSSPSFPSYFDALSNDLGGR--RDHAALLAASREEQGIAEYGAGGSARENAYVDMVARENASADPFGT-KPSRTFTVHASQEWNPSSMAIQDGVTYKISVEAGASWSDGGIAADTTGYETMYNARKHCFTANDKCYKHL---KQRRRFKHAQWFELVCGVADSSWQLYDVAFEKDRYMPLREDRIVETLFAVGAERTLVAQHTGELICFANDAQGGYFNNFGSVNVTVTREDWPPA 294
[Close]
BLAST of mRNA_A-nodosum_M_contig95.6.3 vs. uniprot
Match: F0XXI1_AURAN (WW domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXI1_AURAN)

HSP 1 Score: 205 bits (522), Expect = 4.290e-53
Identity = 116/253 (45.85%), Postives = 145/253 (57.31%), Query Frame = 3 
Query:  504 LRNARLYVDSNRLSDGVSSVYPLSTSSPSFPFYVNTTDDDGDEWARTRAKMIHSSRMAQGVSPRGAGSFDRAVARSNLLSGNYSSEKPFTSFAVNSWERWNPSAFAIQEGETYTVSVPGEQYWTDGRIRSDANGYHLHYDAIDACWVAVGRCQGYLGGSKPRVAPPRARWMQLVCGIGDFIFLAREALSGHERYLPLRDAALQDSLLPIGRNLTFLANYTGELICFANDAEGLYGNNRASLNVTVIRESWPPS 1262
            L N    VD+ RLSDGVSSV PL+ ++P+FP +     D  D  A   A     S + QGV+  G G++ R      L         P   F VN+  RWNPS+FAIQ GETY V V G Q W DG ++ DA+GY  HYDAI  CWVA GRC+ YLG  K     P A W  LVCG+GD+++  +E       +LPLR+A +  +L  +G  L F A   GELICFANDA+ LY NN+  L V V R SWPP+
Sbjct: 1550 LPNLPYTVDATRLSDGVSSVSPLTGTAPAFPIHRGDVSDAPDGRA-VLAAAKRQSEVDQGVAAVGDGAYVREQRVDRLEEAGAWGPAPTRQFVVNASLRWNPSSFAIQRGETYRVDVLGPQRWVDGFVKIDADGYPAHYDAISQCWVAAGRCRPYLGARKRL---PDADWFALVCGVGDYVWKLQED-ELDPTFLPLREAEVSATLFFVGHYLEFTAVDDGELICFANDADHLYWNNQGQLVVDVARTSWPPT 1797
[Close]
BLAST of mRNA_A-nodosum_M_contig95.6.3 vs. uniprot
Match: A0A7S3H6E5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6E5_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.260e-49
Identity = 110/276 (39.86%), Postives = 152/276 (55.07%), Query Frame = 3 
Query:  510 NARLYVDSNRLSDGVSSVYPLSTSSPSFPFYVNTTDDDGDEWARTRAKMIHSSRMAQGVSPRGAGSFDRAVARSNLLS-GNYSS-EKPFTSFAVNSWERWNPSAFAIQEGETYTVSVPGE------QYWTDGRIRSDANGYHLHYDAIDACWVAVGRCQGYLGGSKPRVAPPRARWMQLVCGIGDFIFLAREALSGHE---RYLPLRDAALQDSLLPIGRNLTFLANYTGELICFANDAEGLYGNNRASLNVTVIRESWPPSGNMEEPYVDFI*SC 1304
            N      +NR +DG +S     TSSP FP Y     +  D + R    +   S   QG+SP GAG   R  AR  + +  NY +   P  +F V +  +WNPS FAIQEGETY +SV G       Q+W DG +R ++ GY  ++D+I  C+V +GRC+ YL   K R+A   A WM L C IG F+    E   G E   R++PL ++ LQ+++  +G ++ F A YTG+LICFANDA   Y NN   + VT +R SWPPS N+ +     + SC
Sbjct:   44 NTPFSTGTNRFADGFTSTGAFDTSSPRFPVYKGAVANVSDRYLRYTEYV--KSAAEQGISPYGAGDRIREEARLKITNIPNYENIPAPKKTFPVLAAIKWNPSDFAIQEGETYNISVFGSDSGYSSQFWYDGGLRVNSEGYSSYFDSISNCYVGMGRCRPYLK-KKRRLAS--ANWMSLSCAIGQFVRPLVEVKPGDEAQYRWMPLDESTLQETIFDVGSHVQFRATYTGQLICFANDAHSQYWNNYGQIEVTAVRVSWPPS-NITQYQESLLPSC 313
[Close]
BLAST of mRNA_A-nodosum_M_contig95.6.3 vs. uniprot
Match: A0A835YTW1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW1_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.840e-38
Identity = 71/176 (40.34%), Postives = 96/176 (54.55%), Query Frame = 3 
Query:  765 PFTSFAVNSWERWNPSAFAIQEGETYTVSVPGEQYWTDGRIRSDANGYHLHYDAIDACWVAVGRCQGYLGGSKPRVAPPRARWMQLVCGIGDFIFLAREALSGHERYLPLRDAALQDSLLPIGRNLTFLANYTGELICFANDAEGLYGNNRASLNVTVIRESWPPSGNMEEPYVDF 1292
            P T F+VN+  RWNPS FA+Q GETYT+ V     W+ G + +DA+G    YDA   CW     C  +      R+ PP+ R +QLVCG+GD          G +  +PLR+    D+L   G  +     +TGEL+CFANDA  LY +N  ++ V V R SWPP+    E YV +
Sbjct:   45 PTTLFSVNAAARWNPSGFAVQAGETYTIDVLAGGQWSTGAVVTDADGISPQYDATQQCWTYNTTCLTHQNYDATRLPPPQGRLLQLVCGVGDMQSAPAAVAEGLDWAMPLREEKFTDTLFAAGSYVEITPRFTGELVCFANDANDLYFDNNGTVTVNVTRLSWPPATTFTESYVQY 220
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig95.6.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JUF4_9PHAE2.040e-11867.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCK3_ECTSI5.120e-9969.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2D7Z9_9STRA4.420e-6445.95Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2DJM6_9STRA9.540e-6444.87Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2RJF8_9STRA5.120e-6141.91Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3NLN9_9STRA3.250e-5844.57Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S1XUQ3_9STRA3.540e-5441.38Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
F0XXI1_AURAN4.290e-5345.85WW domain-containing protein n=1 Tax=Aureococcus a... [more]
A0A7S3H6E5_9STRA1.260e-4939.86Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A835YTW1_9STRA1.840e-3840.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig95contigA-nodosum_M_contig95:158503..164385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009033055.1
PFAMsAnk,Ank_2,Ank_3,Ank_4,Ank_5,Pkinase,ZZ
Model size1637
Max annot lvl2759|Eukaryota
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
Exons6
Evalue5.11e-57
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_002570.1
Descriptionspectrin binding
Cds size870
COG categoryI
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig95.6.3prot_A-nodosum_M_contig95.6.3Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig95 158931..164046 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870449.7453756-UTR-A-nodosum_M_contig95:158502..1589301680870449.7453756-UTR-A-nodosum_M_contig95:158502..158930Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig95 158503..158930 +
1680870449.8336716-UTR-A-nodosum_M_contig95:164046..1643851680870449.8336716-UTR-A-nodosum_M_contig95:164046..164385Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig95 164047..164385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870449.7569609-CDS-A-nodosum_M_contig95:158930..1591361680870449.7569609-CDS-A-nodosum_M_contig95:158930..159136Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig95 158931..159136 +
1680870449.7686014-CDS-A-nodosum_M_contig95:159619..1597121680870449.7686014-CDS-A-nodosum_M_contig95:159619..159712Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig95 159620..159712 +
1680870449.7794085-CDS-A-nodosum_M_contig95:160071..1601751680870449.7794085-CDS-A-nodosum_M_contig95:160071..160175Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig95 160072..160175 +
1680870449.7957025-CDS-A-nodosum_M_contig95:161012..1611221680870449.7957025-CDS-A-nodosum_M_contig95:161012..161122Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig95 161013..161122 +
1680870449.8096707-CDS-A-nodosum_M_contig95:161718..1618681680870449.8096707-CDS-A-nodosum_M_contig95:161718..161868Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig95 161719..161868 +
1680870449.820677-CDS-A-nodosum_M_contig95:163839..1640461680870449.820677-CDS-A-nodosum_M_contig95:163839..164046Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig95 163840..164046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig95.6.3

>prot_A-nodosum_M_contig95.6.3 ID=prot_A-nodosum_M_contig95.6.3|Name=mRNA_A-nodosum_M_contig95.6.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=290bp
MRKSRSRAPLFLIFNKKGSEPGSSGLRNARLYVDSNRLSDGVSSVYPLST
SSPSFPFYVNTTDDDGDEWARTRAKMIHSSRMAQGVSPRGAGSFDRAVAR
SNLLSGNYSSEKPFTSFAVNSWERWNPSAFAIQEGETYTVSVPGEQYWTD
GRIRSDANGYHLHYDAIDACWVAVGRCQGYLGGSKPRVAPPRARWMQLVC
GIGDFIFLAREALSGHERYLPLRDAALQDSLLPIGRNLTFLANYTGELIC
FANDAEGLYGNNRASLNVTVIRESWPPSGNMEEPYVDFI*
back to top

mRNA from alignment at A-nodosum_M_contig95:158503..164385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig95.6.3 ID=mRNA_A-nodosum_M_contig95.6.3|Name=mRNA_A-nodosum_M_contig95.6.3|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5883bp|location=Sequence derived from alignment at A-nodosum_M_contig95:158503..164385+ (Ascophyllum nodosum dioecious)
TGTTTGCTCCGCCCGGGGTAACACCCTATTCCTATAACGTTCCTTATGAA
GACGGCACAAGTGGGCAAGATCTTCCAGGTACTACGACGGTGGATGATAT
GGATGATATTCATTTGTAGGTGCCCCTACGCACATAATAATTAATTGCGT
TTAGTCGGTTGGTCCTCAACGCTCGTAACGAAGATTGTGCTGGTGATGTA
ATAGTACGCGTGCTCGAACGCAAAAAAAGCTCGGGGTATTGGCTAAGTAT
TGTTATAAAAGATCATCACGATTAAATGTCTACAGCTCGCATCGCGTAGT
TAGAGGCTCCATTCCGAGTTCGTAACAAGTACAGAGAGCATACACTCGCA
AAAGATCACTCTTCTCAGGATAACAAACACTAAAATCACAAAAAAGGCGA
CCTCCTGAGACTCAAAGAAATCAATCGAATGAGGAAAAGCCGTTCCCGTG
CTCCCCTTTTCCTCATTTTTAACAAGAAAGGTTCGGAGCCTGGCAGCAGT
GGCTTGCGCAACGCTCGCCTTTACGTGGACTCGAACCGACTTAGCGATGG
GGTGTCGAGCGTCTATCCTCTGTCGACATCTAGCCCTTCGTTTCCGTTCT
ACGTTAACACGACTGATGATGATGGAGACGAATGGTGACCCCCTCACAAC
TGGGCCATCTTCAGAAATAAGCCCCCCCCACTCCCCTAGTCTCGTGTCTT
CAGTATTCGGCGTAGATGCCTTGCAAGGTTTTTTCTTGACTAACTTTACA
CATCGTTCGTCGATCTGTCTCATCGTAATTGCCACAAGAGTTCTCTCTGA
TTTCCCCCCTTTTGTATTGTTTGCTATATATTTTGATGCCTATCAATATA
AACATCGTCGGACGGTATATACATACGAAGCATGCATGTATATGTCATAA
CGTGGATTGAGTGATGCGCAATAAGTTCTACGATGACCGCCAGCAGGAAG
AGGGTTGCCAAGCTATCGCGCGCCTCGTTTCTCGGTACGTGCCCGGGCAG
CAGGAAATCCATCACAGCGCACTTTGTGCGATCGTCTAGCTTGATATGCG
TTTTGAATATCTAGCGTATAGTGTTGGAATATTCATTCGTGCGGTGTTCG
TGCCTGGCTCTACGTAGGGCAAGGACGCGGGCTAAAATGATACATAGTTC
CCGGATGGCTCAGGGTGTTTCGCCCAGGGGGGCTGGAAGCTTCGACAGAG
CGGTCGCGCGGTGAGAGAGCAATAGCTCTAACGTAAGGATACATGACGAC
TGTATCTACGCTCACTCATGAACTGGGAAAAGAGTAAGACAGAACTTCTC
TTAAAATTTCGGACCAGTTGTTTGACTGTGTCAGGGCCTCTGCGGCAAGC
AACAGAGCGCCTTCTGATGTTCTCGAGGTCAGTGGTCAATGGTGGAGAAT
GCACGTTATTATACACGAAACATCACGTATTCCGGATTATTTTGTGTTTG
TCCGAATCAGGCCCGATAAAATACCCTCTATTAAGTCAGGGAATACAAAA
TAGTGGGGAAGGAGGTGCTCTTCATCTAAGGTAAAGGTTTGCTGCCTTGC
GCAATACGTCGATACCCAGGAGTAACCTTCTGAGTGGCAACTACTCATCT
GAGAAACCGTTCACCAGCTTTGCCGTGAACTCCTGGGAGCGATGGAACCC
CTCGGCCTTCGCGATTCAAGAAGGTAAGACTCTCTGCGCCGTCTATCCTC
GCCGGAGTCCTTCTTCGAGCCAATCATTGCCAAAAACAATCTGCCCGGTG
CAGCATGCGCAGGCCTCGCCCCAACTTCCCAAATTTACGACTCAATCGTT
CAACGATTGAGGGGGTGGAGGATGCCGCGAATTTGTCCCCGTTTCGGGAG
GGGGCGGCACGAAAATACCCCATACCAGGGACATATTTGACCAACCCCCT
GGTGAAATGAGTTGAATCCGGGGAAAGCTTGACGACCATGTAGAGAATAA
TGCAGTCCTATCCCCGGAAGGGGATGTTTTGATAATCTCCCCGGGGACGG
AATCGTCATATCCCCACCCACGCCCCCAATCGTTGAACGGCTCGACTTAC
CTCCTATTGGTTGGAATATTCCTTCCGGGCGCGTTTGGAAACGAGAGGGT
TTCGTCCCACTGCATACCGCCGCCTACCGTTTATGCTCGAGTCAACCAAC
AGTCGATCCGGCAGAGAAAAAAAAATATCAGCTTGGAGTTTGGCCCAGAT
AAAGTTTGCACGTGCCCCACACGTGTGTCGATGTCGTCGTAAGAATTGGA
CACCGCGTCGACATTTCCTCTCACTAGAATGTCGTTAAATATACATTTAA
CCGATAGGGATGTCATAACGCCACGATGTAACGTTGCGATAAAGTATTCA
GGTCGCCAGGCCTCAAAATCCTGCATCAAGGCAAGGTCGCATCGCCGATC
CTGCCATGAAGCGCAACAACAAGCTAAGCAAGATATCCGCGAACCATTCG
GGCCACTTGCTTTCCGTTCAGAAACTATGCTCACTGCTACTGCCGTCTCG
TTACGCTTAGGAGAGACGTACACGGTGTCTGTACCAGGGGAGCAATACTG
GACAGATGGACGGATACGCTCAGACGCCAATGGCTACCATTTACACTACG
ACGCCATCGACGCTTGCTGGGTGAGAAGCTTAAGACGCTTGCAAAAAAAA
GTTTTGTTATGTGAATGGCGAGGCGCCACACGATGTGTCGTTCCGCACGA
GGTGCGCCCTGTCGTGAATGAAGGAAAAGATTACTGCTAGTTGCTGGAAC
AAGTCCTTGGTTATGTTCACAAGTGTGGATCGTCGAAGTTCGCCGTTGCC
TCTAGAAAACACAAGGGTTGGCACGCAAACTACCGTAGCAGCCGCACGGG
TTGCACGGGCGGTTAGAGAGCTTCATGGTTGAGAGCGAGCCGAGTCGGTA
TACTCCCGGAAAAATCCGCGATATTTTGTCCGGTAGTCGCGTTAGTTTCA
TGGCACGGTGGGTTGGTTCTTTGTTATATCTTTAGGTCATTTTCACGAAC
AGCCATACCATCGACGTAGCGTTGGCGACCAAAACACTTTGCTGAATTCT
TGTCATTTTAAAGGCGCACGCGACCACTTTCTCAAGAGGCCAGTGGAATA
ATGGAAAATAATGTGAACTACTTGACTCCTGCTACTCGGAACTCAAAGAC
AAAACAAGCCGAATCTTTCAGCTTGACCAAACAAGAGGTACACATTTTCA
CTGGATGGATTTACAGGTCGCCGTCGGGCGCTGCCAGGGATACCTGGGGG
GCTCCAAGCCACGCGTGGCCCCACCGCGAGCGCGGTGGATGCAGCTAGTG
TGCGGAATCGGAGACTTCATTTTCCTCGCTCGGGAAGCCCTCTCGGGGCA
TGAGAGGTATCTGCCTGTGAGTTTCAGGGCTATACAGTTACTGTTATTCA
ATATCCTGCGCTACGGGCATATGAGACTGTCCATAGATACCGCCTTGGAT
CCACACGCACACCTCATATTTTTCTCTGCGATTAAAAAGGCGCTAGCGTG
CGGGGGGGGCGTTAATCAACGCCGCGATGTTTAACCATTTGGGTCGCATC
GCTCTCGAACATAATCAGGGCGAGGAAGTCTGTACCCGGGAGCGTTCATT
TCCCCGATTATGAGGGCCCTCTATTCTCAATATGACTGCCCATCAGTCTA
ATCTATAGGTTGCGTGGCTAGCGATAGCGCGTGCCGTTTATTTTTTATTT
TTTAGGTGAATCAGAATGACCCAGTAGAACGGAATCGGGAGATCCAGCAC
GTTTCTGTCAGCCAGCCTGTCTTGCTCCGGGCCATCGGGTTTCCTTCTCG
CTCTTCTCCCGTCCACCTTAGCTACGCAAACAGAGTTGTCCCCGGCATCA
TGGCGATGATGACGGCAAACAACAATCATTGCCCTTTTGTATAATGTTAC
ATTACGCACCCTAATAGCTACAGGATCATTGTCGTCCTTTCCCGTGGAAA
AAAACAGCACTCCTCCTTAGGACTAAACTGCCCCATCAAGTGACACCGGG
ATCATATTTTCTTGTCCGTGAATTGTTATTTGGACCTTCTTCGCGACAAC
TATTTTTTGTCTTTGTTTCTGGAACTCCAATCAACCAAGATATAGTCTTC
TTTCGAAGGGAAAACAAAGGGAAAAACGGGGCAACTCTTCCAGCATCACG
ACAGCCTTTAATCCAGACCGATTAAACCTACTGTTTTTGCCCTTTCCCCA
ATCATCGTATAACAACCTCGCTCTTTCGCTTTCACAGAGATAACTCTGTG
GTAGCCTTGTACTTACACCTCTTTTATTACATTACTAACTACTATATTCA
CCATAAAATACATTGCATACTTGTATATAATACTACTTCTCTTCCTTAGC
ATCTAGTAGTTAGATTCACCTCATAATTATCAGAAAGCAAAACATTGTCT
CTTGCCTTGTCAATCGGTAATAATAGTAACTTGCTTGGGGGCCAATAATA
TGTCAATTAAATAGGAGTGCTGACACCCATCCGATCCTAGACCTATAATC
TAACAAAATTGAGCTGTATCCAGGCTCATCGTGTCCTTTGTCTTTGTTTT
GGTTGGTGTCCCTGCATGGCGATTAATAATGCAAGTGTACAGTATAAAGG
TGGGTTTCTCCCCGAGATGATACTGTTGACCCTACACGCTACAACCATCG
GGGAACCTGATTAAATGCCATGAACAGGCTTTGTCTTCGCAGCCTATGAT
CCCACTTAATCAAGCGTTTTGACGTTTCCCCCCCCTGATTGGGGGATGCT
CAGAAGGTCTAGATGCGTTCATATTTTTCCTTAAAACAAAATTGCGCTCC
TCGAAGAAGGCACTACATTTCTCCAATATTCCTTATCATGAACTTGGGAC
TTCATTTCCATTTACTCGATGTTGCGACCATCGCTGATCAGACATTTTTC
TGCGAGCTGGAACCAGACTGGGAATTAAACAAGACAGTAAATGGTGCTTG
ACATTTTTCCCGCTCGTCTCAGAGAATGCTCTGATCGGTGACCATCGAAA
AGCGGCTTAAAGTATTTGGACCACTTCGTAGAAAAATCGGCGAAACATAC
AACGACTTACACCACTAGAAACGTTTCCCGGTTAGATCGGTGCTCCAGCT
AGAACCTGATTGTAAATACGCGTAACCTTTGACGACCCGCAATCCCGTGC
CACCTTGGTCACTTTACGTATCATCTGAAACTTGAGCATTTTGAAGTATG
TGCATGTGACGTTGAAATCGTGCGTTTGCCAAGAAGATTCGCGTGAGACC
GTCGCTGGGATCTGTTAATTTTCTCTTCTTCGCGCTGTATGCTGGAACTC
TCTACGTTGCTGTGGCCTTGTTCGGCGAGTGGGCCAGCTTCGCGACGCAG
CACTGCAAGATTCGTTGCTGCCGATCGGGAGAAACCTGACCTTCCTGGCC
AATTACACGGGGGAGCTGATTTGTTTCGCGAACGATGCGGAGGGTCTCTA
TGGCAACAATCGCGCCTCGTTGAACGTGACTGTCATCCGGGAGTCTTGGC
CGCCCAGCGGCAATATGGAAGAGCCTTACGTTGATTTCATTTGAAGCTGC
CTCCAATGCTGCATCGTAGGTAAAACGTGTGCATCTCTGTGATGGGTAAT
CACAAGTAAACATATGATATATAAAGTACCTATGTTCTTGGAGAGCGGTG
TATCAAGGGTTACACCGATGTCAAGTAGTAATGCGAGGACTACATTGACA
CACCCTTCCTTCCATGGGCAATTTGTACGTATGTGGCGCGTGTCGTAAAA
ACACATGTGCAAATGACAACTAACAATACCTATTACGAAAACTGCTGATT
AGACAAGACAAAGGGGACACACTCTCTCTACTTGTGTACTTGTATAGTTC
TTACTTAAACCCTGGGTACCTTGTGTTTCCCGC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig95:158503..164385+

>mRNA_A-nodosum_M_contig95.6.3 ID=mRNA_A-nodosum_M_contig95.6.3|Name=mRNA_A-nodosum_M_contig95.6.3|organism=Ascophyllum nodosum dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at A-nodosum_M_contig95:158503..164385+ (Ascophyllum nodosum dioecious)
ATGAGGAAAAGCCGTTCCCGTGCTCCCCTTTTCCTCATTTTTAACAAGAA
AGGTTCGGAGCCTGGCAGCAGTGGCTTGCGCAACGCTCGCCTTTACGTGG
ACTCGAACCGACTTAGCGATGGGGTGTCGAGCGTCTATCCTCTGTCGACA
TCTAGCCCTTCGTTTCCGTTCTACGTTAACACGACTGATGATGATGGAGA
CGAATGGGCAAGGACGCGGGCTAAAATGATACATAGTTCCCGGATGGCTC
AGGGTGTTTCGCCCAGGGGGGCTGGAAGCTTCGACAGAGCGGTCGCGCGG
AGTAACCTTCTGAGTGGCAACTACTCATCTGAGAAACCGTTCACCAGCTT
TGCCGTGAACTCCTGGGAGCGATGGAACCCCTCGGCCTTCGCGATTCAAG
AAGGAGAGACGTACACGGTGTCTGTACCAGGGGAGCAATACTGGACAGAT
GGACGGATACGCTCAGACGCCAATGGCTACCATTTACACTACGACGCCAT
CGACGCTTGCTGGGTCGCCGTCGGGCGCTGCCAGGGATACCTGGGGGGCT
CCAAGCCACGCGTGGCCCCACCGCGAGCGCGGTGGATGCAGCTAGTGTGC
GGAATCGGAGACTTCATTTTCCTCGCTCGGGAAGCCCTCTCGGGGCATGA
GAGGTATCTGCCTCTTCGCGACGCAGCACTGCAAGATTCGTTGCTGCCGA
TCGGGAGAAACCTGACCTTCCTGGCCAATTACACGGGGGAGCTGATTTGT
TTCGCGAACGATGCGGAGGGTCTCTATGGCAACAATCGCGCCTCGTTGAA
CGTGACTGTCATCCGGGAGTCTTGGCCGCCCAGCGGCAATATGGAAGAGC
CTTACGTTGATTTCATTTGA
back to top