mRNA_A-nodosum_M_contig947.26.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig947.26.1
Unique NamemRNA_A-nodosum_M_contig947.26.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig947.26.1 vs. uniprot
Match: D7FVV8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVV8_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 2.050e-65
Identity = 150/314 (47.77%), Postives = 193/314 (61.46%), Query Frame = 3 
Query:  210 MRLRVATVVKETIEKRLAGTATDERGRGQGPGSNGPAAGNMQQQQMEDPSVTSYLQALQSAIMTKVKSMCDVQDDREQREAEELMREIIEFDDEMLAARERLDATRARVARLAAETCRDSLRLAEAADNRAVAALEAKIEQARKERDERGTLLL------------PHGPLGAVEDVDAAATGVYAGIIGDVLEPKVSLLIGKLSELPGPLKSVLQEIPELTASLAKMVQKVEETMTVRDSRTEKLLGKAPPTPLP--KGNAA--------AAGATGSRHPPEEIRETARKARLEQARKEWETAGDGLLGGMFS 1085
            MR RV+TVV ET +K LAG  +            G +AG       +D + T+YL+A Q+A+  KV+ +C+VQD RE RE +EL+ EI +F  ++ AAR RL ATRARVARL+A+TCRD+LR++EAAD+RA A LEA    AR+E +  G L L                            G++ G+   V+EPKVS LIGK++ELPGPLKSVLQEIPELTASLA  VQ+ E  +    SRTE LLGKAPPTPL   KG  A        A      R+PPE+ R  AR+AR++QARKEWE  G G++GG+F+
Sbjct:    1 MRYRVSTVVDETTKKSLAGKKS------------GSSAGVAVVAPAQDAATTAYLRAFQAAVADKVRDLCEVQDARESREEDELVGEIFQFSHDLRAARSRLYATRARVARLSADTCRDALRVSEAADDRACAVLEASTAHARRESETGGPLPLRIDDAAXXXXXXXXXXXXXXXXXXXXXXGIFQGLETGVVEPKVSALIGKMAELPGPLKSVLQEIPELTASLAVSVQEAEAAIKAGQSRTEALLGKAPPTPLSSKKGKGAXXXXXXXXANVVEDERYPPEDARAAAREARVQQARKEWEAIGVGVVGGIFN 302
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig947.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVV8_ECTSI2.050e-6547.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig947contigA-nodosum_M_contig947:237394..239557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2164
Hectar predicted targeting categoryother localisation
Exons1
Cds size1017
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870447.3524663-UTR-A-nodosum_M_contig947:237393..2374641680870447.3524663-UTR-A-nodosum_M_contig947:237393..237464Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig947 237394..237464 +
1680870447.3745663-UTR-A-nodosum_M_contig947:238481..2395571680870447.3745663-UTR-A-nodosum_M_contig947:238481..239557Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig947 238482..239557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870447.3626745-CDS-A-nodosum_M_contig947:237464..2384811680870447.3626745-CDS-A-nodosum_M_contig947:237464..238481Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig947 237465..238481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig947.26.1prot_A-nodosum_M_contig947.26.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig947 237465..238481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig947.26.1

>prot_A-nodosum_M_contig947.26.1 ID=prot_A-nodosum_M_contig947.26.1|Name=mRNA_A-nodosum_M_contig947.26.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=339bp
MSAQDDKRTPVSSSRKRKAGAMSSASFPRVGPVHKLVPATNDGLTEMRLR
VATVVKETIEKRLAGTATDERGRGQGPGSNGPAAGNMQQQQMEDPSVTSY
LQALQSAIMTKVKSMCDVQDDREQREAEELMREIIEFDDEMLAARERLDA
TRARVARLAAETCRDSLRLAEAADNRAVAALEAKIEQARKERDERGTLLL
PHGPLGAVEDVDAAATGVYAGIIGDVLEPKVSLLIGKLSELPGPLKSVLQ
EIPELTASLAKMVQKVEETMTVRDSRTEKLLGKAPPTPLPKGNAAAAGAT
GSRHPPEEIRETARKARLEQARKEWETAGDGLLGGMFS*
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mRNA from alignment at A-nodosum_M_contig947:237394..239557+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig947.26.1 ID=mRNA_A-nodosum_M_contig947.26.1|Name=mRNA_A-nodosum_M_contig947.26.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2164bp|location=Sequence derived from alignment at A-nodosum_M_contig947:237394..239557+ (Ascophyllum nodosum dioecious)
TTGGGGAGGAAGGCGAAGTCCCTGCATGAAAATAGAGTGAGCTGGCCAGG
TTAAGAAGAAAGTGTGTGTCGATGTCGGCGCAAGATGATAAACGTACGCC
AGTTTCTTCTTCGCGGAAGCGTAAAGCTGGGGCGATGTCCTCCGCCTCGT
TCCCCCGAGTTGGCCCAGTTCACAAGTTGGTTCCTGCGACAAATGACGGA
CTGACGGAGATGCGACTCAGGGTGGCTACAGTCGTCAAGGAAACCATAGA
AAAGAGACTGGCAGGTACGGCCACAGACGAAAGGGGTAGAGGCCAAGGAC
CTGGGAGCAACGGGCCTGCTGCAGGCAATATGCAGCAGCAACAGATGGAA
GACCCGTCTGTAACTTCCTACCTACAAGCCCTTCAGTCCGCGATCATGAC
AAAAGTAAAGTCCATGTGCGACGTCCAGGACGATCGCGAGCAGCGCGAGG
CCGAAGAGCTCATGAGAGAGATTATTGAATTCGACGACGAGATGCTTGCT
GCCAGGGAGAGGCTTGACGCCACGCGCGCGCGAGTCGCGCGGTTAGCGGC
CGAAACGTGCAGGGATTCCCTGCGGTTGGCCGAGGCGGCGGACAACCGCG
CCGTCGCCGCTCTCGAGGCCAAGATCGAGCAGGCCAGAAAGGAAAGAGAC
GAGAGGGGAACGCTCCTTCTGCCGCACGGGCCTTTGGGTGCCGTCGAGGA
TGTCGATGCCGCCGCCACGGGCGTGTACGCTGGAATCATCGGCGACGTCC
TTGAGCCCAAGGTTTCCTTGCTCATCGGGAAGCTCTCCGAGCTGCCGGGT
CCCTTGAAGTCTGTGCTGCAGGAGATTCCCGAGCTCACGGCATCTCTAGC
GAAGATGGTTCAGAAGGTAGAGGAGACAATGACTGTACGTGACAGTAGGA
CGGAGAAGTTGTTGGGCAAGGCGCCGCCAACGCCGCTGCCGAAGGGTAAC
GCCGCTGCGGCCGGGGCCACCGGTTCTCGACATCCGCCAGAAGAAATAAG
AGAGACGGCAAGGAAAGCACGGCTGGAGCAGGCTAGGAAGGAGTGGGAGA
CGGCTGGAGATGGCTTGCTGGGAGGAATGTTCAGCTGAGTTTAATACAGC
AGTGCGTCGTTTTTATTCCCGCGCAATGTTGGCATGCATGATGGCGTGGT
CAGTGGTGCATGCTCTGTACAGGATTCGTAGTGTGTCTCTTACGGTGTTT
GGACTAGATTGTTCGGTTCGGCTACTAATGCTCTGTTTCTACCACAGTGT
TGTCTCCGACACTGCGTGTCCTTGCGTGTGCTTCCTTCCGTGACTGGTGA
TGATGAGGGAGAGGCGCTTGTGTATTGTCACGCGGATCCACGACTGCTGG
TCAGCCCTCTTCGCGTCAAGTATTTGTCCTTTTAAGTTCGCGACGAGGCT
TCCGTTCAGCTGAACGTCAACCATCGTCTTAGAGCCGCCGTTGATGTAGG
ATAGCAGGTCTTTGTTTTTCTGGAGAGTAGGCCAATGGCTGTGATAGTGG
GCCCGGCAATTGTAGAAAGATGAAGTTGAGCAAACTTGATCTTTTTTATC
TTAGACTACAGTTGTGTAGTTAGCCTGCACGCAGCCAAAACTCCCGGGGT
GGTTTTCTCTGTTTATGACTCAAGTTCAACTTAAGTGAACCCGTTACGTG
TTGGGCGTTGTTTTTGTTAATGCTTCGGTGCGGTTCGTTCGGTTGTGAAC
AGGACAGAGGAATGTGCATGTGAGCTGCTCTTCGTTGGAGTTGGGACCCC
AGATTGGCCTATTTATCCTGAGAAGCATGTATCTCACGGTGGTGTTGGTA
GAGTTTCTTTTTTTTGTAGCTAGTAAGTCTGGTCCTCATGTTCCCTGCTT
CTACAGTACATAAGCGGTTTGTGTTTCTCTCATGTTGAGTATTCTGAACA
AGGACTGTTGAGCAGGATTGTACCGCATCAGTGGCGCGGTCCATGCTCTG
ACGTACGAAACGCAAGGATATCGAAACCCCAAATCGCAGGTGTCCTTCAA
GCCGTGGAATGTGCTCGTCTGGACGAGCATTCCTGCGTGTTCTCATCCCC
AAAGACGGAAGAAACGACGGGATCGCAAACGTATCCCATGTGAGAGTTGC
TCGCGTTACGATGACTAAAGAGACACTACAAGGTAGCAAGTAAAGTCAAT
GCTTACGATACCGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig947:237394..239557+

>mRNA_A-nodosum_M_contig947.26.1 ID=mRNA_A-nodosum_M_contig947.26.1|Name=mRNA_A-nodosum_M_contig947.26.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1017bp|location=Sequence derived from alignment at A-nodosum_M_contig947:237394..239557+ (Ascophyllum nodosum dioecious)
ATGTCGGCGCAAGATGATAAACGTACGCCAGTTTCTTCTTCGCGGAAGCG
TAAAGCTGGGGCGATGTCCTCCGCCTCGTTCCCCCGAGTTGGCCCAGTTC
ACAAGTTGGTTCCTGCGACAAATGACGGACTGACGGAGATGCGACTCAGG
GTGGCTACAGTCGTCAAGGAAACCATAGAAAAGAGACTGGCAGGTACGGC
CACAGACGAAAGGGGTAGAGGCCAAGGACCTGGGAGCAACGGGCCTGCTG
CAGGCAATATGCAGCAGCAACAGATGGAAGACCCGTCTGTAACTTCCTAC
CTACAAGCCCTTCAGTCCGCGATCATGACAAAAGTAAAGTCCATGTGCGA
CGTCCAGGACGATCGCGAGCAGCGCGAGGCCGAAGAGCTCATGAGAGAGA
TTATTGAATTCGACGACGAGATGCTTGCTGCCAGGGAGAGGCTTGACGCC
ACGCGCGCGCGAGTCGCGCGGTTAGCGGCCGAAACGTGCAGGGATTCCCT
GCGGTTGGCCGAGGCGGCGGACAACCGCGCCGTCGCCGCTCTCGAGGCCA
AGATCGAGCAGGCCAGAAAGGAAAGAGACGAGAGGGGAACGCTCCTTCTG
CCGCACGGGCCTTTGGGTGCCGTCGAGGATGTCGATGCCGCCGCCACGGG
CGTGTACGCTGGAATCATCGGCGACGTCCTTGAGCCCAAGGTTTCCTTGC
TCATCGGGAAGCTCTCCGAGCTGCCGGGTCCCTTGAAGTCTGTGCTGCAG
GAGATTCCCGAGCTCACGGCATCTCTAGCGAAGATGGTTCAGAAGGTAGA
GGAGACAATGACTGTACGTGACAGTAGGACGGAGAAGTTGTTGGGCAAGG
CGCCGCCAACGCCGCTGCCGAAGGGTAACGCCGCTGCGGCCGGGGCCACC
GGTTCTCGACATCCGCCAGAAGAAATAAGAGAGACGGCAAGGAAAGCACG
GCTGGAGCAGGCTAGGAAGGAGTGGGAGACGGCTGGAGATGGCTTGCTGG
GAGGAATGTTCAGCTGA
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