mRNA_A-nodosum_M_contig945.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig945.2.1
Unique NamemRNA_A-nodosum_M_contig945.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig945.2.1 vs. uniprot
Match: A0A7S1C0F8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C0F8_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.090e-6
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:   55 TAGGTTASSAVVHSTGCGS-KSACLQRYCECFSLGITCSNKCNCSNCKNKAAA 210
            T+ G+ ++    H  GC   KSACL++YCECF++G+ CS  C C NC+N+  A
Sbjct:  362 TSAGSRSTKTGAHKVGCKCRKSACLKKYCECFNMGVKCSQNCRCINCQNEDPA 414
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BLAST of mRNA_A-nodosum_M_contig945.2.1 vs. uniprot
Match: A0A7S2PT71_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PT71_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.470e-5
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 1 
Query:   85 VVHSTGCG-SKSACLQRYCECFSLGITCSNKCNCSNCKN 198
              H+TGC   KSACL++YCECF+ G+ C   C C  CKN
Sbjct:  357 TAHATGCRCKKSACLKKYCECFTAGVVCGGNCKCEGCKN 395
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BLAST of mRNA_A-nodosum_M_contig945.2.1 vs. uniprot
Match: A0A0V0R9G0_PSEPJ (CRC domain-containing protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0R9G0_PSEPJ)

HSP 1 Score: 51.2 bits (121), Expect = 3.830e-5
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   85 VVHSTGCG-SKSACLQRYCECFSLGITCSNKCNCSNCKNKAA 207
            VV + GC   KS C ++YCEC++ GI CS+KC C+ CKNK A
Sbjct:  595 VVVNKGCNCKKSGCQKKYCECYNSGIQCSDKCKCTECKNKDA 636
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BLAST of mRNA_A-nodosum_M_contig945.2.1 vs. uniprot
Match: A0CAU5_PARTE (CRC domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0CAU5_PARTE)

HSP 1 Score: 49.7 bits (117), Expect = 9.630e-5
Identity = 20/39 (51.28%), Postives = 26/39 (66.67%), Query Frame = 1 
Query:   85 VVHSTGCGS-KSACLQRYCECFSLGITCSNKCNCSNCKN 198
            + HS GC   KS C ++YCEC+ +GI CS+ C C  CKN
Sbjct:  175 MAHSKGCNCRKSGCKKKYCECYQMGIECSDNCKCDGCKN 213
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig945.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S1C0F8_9STRA3.090e-645.28Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2PT71_9STRA1.470e-553.85Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A0V0R9G0_PSEPJ3.830e-554.76CRC domain-containing protein n=1 Tax=Pseudocohnil... [more]
A0CAU5_PARTE9.630e-551.28CRC domain-containing protein n=1 Tax=Paramecium t... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig945contigA-nodosum_M_contig945:49937..50262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LP28
PFAMsHA,TCR
Model size327
Max annot lvl2759|Eukaryota
KEGG koko:K21776
KEGG Pathwayko04218,map04218
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000785,GO:0000790,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006355,GO:0006996,GO:0007049,GO:0007140,GO:0007276,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045893,GO:0045935,GO:0048232,GO:0048285,GO:0048518,GO:0048522,GO:0048609,GO:0050789,GO:0050794,GO:0051037,GO:0051039,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051321,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0071840,GO:0080090,GO:0140013,GO:1902680,GO:1903046,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons1
Evalue2.62e-09
EggNOG OGsKOG1171@1|root,KOG1171@2759|Eukaryota
DescriptionDNA-binding transcription factor activity
Cds size324
COG categoryS
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870441.9599895-CDS-A-nodosum_M_contig945:49936..502601680870441.9599895-CDS-A-nodosum_M_contig945:49936..50260Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig945 49937..50260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig945.2.1prot_A-nodosum_M_contig945.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig945 49937..50260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig945.2.1

>prot_A-nodosum_M_contig945.2.1 ID=prot_A-nodosum_M_contig945.2.1|Name=mRNA_A-nodosum_M_contig945.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=108bp
SHNPPIRGKRPRPRQAHATAGGTTASSAVVHSTGCGSKSACLQRYCECFS
LGITCSNKCNCSNCKNKAAAGRTRTGPGIGAGEGKLDARTVDTMSSTTPR
PPTTAVKT
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mRNA from alignment at A-nodosum_M_contig945:49937..50262+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig945.2.1 ID=mRNA_A-nodosum_M_contig945.2.1|Name=mRNA_A-nodosum_M_contig945.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=326bp|location=Sequence derived from alignment at A-nodosum_M_contig945:49937..50262+ (Ascophyllum nodosum dioecious)
TCACACAACCCACCAATACGCGGGAAACGGCCTCGACCTCGCCAGGCCCA
CGCGACGGCTGGGGGAACAACGGCCTCGAGCGCCGTCGTGCACAGCACCG
GGTGCGGGAGCAAATCGGCGTGCCTGCAGCGATACTGCGAGTGCTTCAGC
CTCGGCATCACTTGCTCCAACAAATGCAACTGTAGTAACTGCAAGAACAA
GGCCGCCGCGGGGCGGACAAGGACCGGGCCAGGCATCGGCGCCGGCGAGG
GAAAACTCGACGCGCGTACCGTTGACACGATGTCCTCCACCACACCCCGC
CCTCCTACGACAGCCGTGAAGACTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig945:49937..50262+

>mRNA_A-nodosum_M_contig945.2.1 ID=mRNA_A-nodosum_M_contig945.2.1|Name=mRNA_A-nodosum_M_contig945.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at A-nodosum_M_contig945:49937..50262+ (Ascophyllum nodosum dioecious)
TCACACAACCCACCAATACGCGGGAAACGGCCTCGACCTCGCCAGGCCCA
CGCGACGGCTGGGGGAACAACGGCCTCGAGCGCCGTCGTGCACAGCACCG
GGTGCGGGAGCAAATCGGCGTGCCTGCAGCGATACTGCGAGTGCTTCAGC
CTCGGCATCACTTGCTCCAACAAATGCAACTGTAGTAACTGCAAGAACAA
GGCCGCCGCGGGGCGGACAAGGACCGGGCCAGGCATCGGCGCCGGCGAGG
GAAAACTCGACGCGCGTACCGTTGACACGATGTCCTCCACCACACCCCGC
CCTCCTACGACAGCCGTGAAGACT
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