mRNA_A-nodosum_M_contig945.13.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig945.13.1
Unique NamemRNA_A-nodosum_M_contig945.13.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig945.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig945contigA-nodosum_M_contig945:181029..183730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LD34
Model size1929
Max annot lvl2880.D8LD34|-
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.17e-05
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size1110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870441.876543-UTR-A-nodosum_M_contig945:181028..1814811680870441.876543-UTR-A-nodosum_M_contig945:181028..181481Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig945 181029..181481 -
1680870441.9126642-UTR-A-nodosum_M_contig945:183278..1833221680870441.9126642-UTR-A-nodosum_M_contig945:183278..183322Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig945 183279..183322 -
1680870441.9248004-UTR-A-nodosum_M_contig945:183408..1837301680870441.9248004-UTR-A-nodosum_M_contig945:183408..183730Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig945 183409..183730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870441.8875148-CDS-A-nodosum_M_contig945:181481..1824071680870441.8875148-CDS-A-nodosum_M_contig945:181481..182407Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig945 181482..182407 -
1680870441.898448-CDS-A-nodosum_M_contig945:183094..1832781680870441.898448-CDS-A-nodosum_M_contig945:183094..183278Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig945 183095..183278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig945.13.1prot_A-nodosum_M_contig945.13.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig945 181482..183278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig945.13.1

>prot_A-nodosum_M_contig945.13.1 ID=prot_A-nodosum_M_contig945.13.1|Name=mRNA_A-nodosum_M_contig945.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=370bp
MVNVYSRKCRTEGCGKQPSYGVTGTKTAEYCAQHAPDGMVDVKSRKCRTE
GCGKHPSYGVAGTKTAEYCAQHGLNGMVNVYSRKCRSESCGEVPSFGVTG
TKTAEYCTRHAPDGMVDVKSRKCRTESCKKCPSFGVAGTKTVEDCAQHAP
DGMVDVKSRKYRTEGCGKQASLGAAGTKTGEYCSQHAPDKMVNVYNKKCR
TEGCGKRPSYGVAGTETAEYCTQHAPDGMVDVKSLQCRTRGCGRKPSFEV
GNTRTAEYSTQHACLKCGVGGYREGEVDPHHSGKETIGNIRPNGVECQIV
HPPANTNPPSEGSQGSRKRERYPEVMSTASMRPISRESAGRAGTMQDIDG
KRPPVERDSSVKVEVQLSM*
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mRNA from alignment at A-nodosum_M_contig945:181029..183730-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig945.13.1 ID=mRNA_A-nodosum_M_contig945.13.1|Name=mRNA_A-nodosum_M_contig945.13.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2702bp|location=Sequence derived from alignment at A-nodosum_M_contig945:181029..183730- (Ascophyllum nodosum dioecious)
GGGCAACACGTCAAGAACGGGACGTTCTTCTTCTCCAACAGCTTAAGTCT
GTGGCAAAATTCCGGCGTTCGAAATTGAAGGCAAGAAAATTGCGGACTGC
TGCGAATAGCGCGCCCCGGACGGGATAGTCGACGTCAAAAACCCGTGGGT
GCTGCAATCGGCCGTCTTTCGGAGTGGCCGGCACATGAATGCCGGAGTAC
TGTGCACGTCACGCATGAGGCGGGATGGTCAACGCCAATAGAAGGAAGTG
CAGAGCCGAAAGCTGTGGAAAGAGGTTATCGTTCGGAGTTGCAGGTACGA
AAACTGTGGAGTACTGGGCACAGCACGCACCGGACGGAATGGTCAACGTC
AAGAGCAGGAAGTGCAGAACCGAAGGCTGCGGCAAGCAACCGTCGTATGG
AGTGGCAGGTACGGAAACTGCGGAGTACTGTGCTCAGCACGCACTAAACG
GGATGGTCAACGTCTACAGCAGGAAGTGCAGAACTGAAGGCTGCGGCAAG
CAACCGTCGTATGGAGTGACAGGTACGAAAACTGCGGAGTACTGTGCTCA
GCACGCACCGGACGGAATGGTCGACGTCAAGAGCAGAAAGTGCAGAACCG
AAGGCTGTGGCAAGCATCCGTCGTATGGAGTGGCAGGTACGAAAACTGCA
GAGTACTGTGCACAACACGGACTAAACGGGATGGTCAACGTCCACAGCAG
AAAGTGCAGAACTGAAAACTGCGACAAGGTGCCGTCGTTTGGAGTGACAG
GTACGAAAACTGCGGAGTACTGTACACAGCACGCACCGGACGGAATGGTC
GACGTCAAGAAGAGCAGAAAGTGCAGAACCGAAAGCTGCGAAAAGTGGCC
GTCGTTTGGAGTGGCAGGTACGAAAACTGTGGAGTACTGTGCACAGCACG
CACCGGACGGGATGGTCAACGTCAAGAGCAGGAAGTGCAGAACCGAAGGG
TGCGGCAAGCAATCGTCGTATGGAGTGGCAGGTACGGAAGCTGCGGAGTA
CTGTGCTCAGCACGCACCGGACGGGATGGTCGACGTCCGCAACAGAAAGT
GCAGAAGCGAAGGCTGCGGCAAGAAACCGTCGTATGGAGTGGCAGGTACG
GAAACCGTGGAATACTGTGTACAGCACGCACCGGACGGAATGGTCAACGT
CAAGAGCAGGAAGTGCAGAACCGAAGGCTGTGGCAAGCAACCGTCGTATG
GAGTGGCAGGTACGAAAACTGCAGAGTACTGTGCACAACACGGACCGGAC
GGAATGGTCGACGTCAAGAGCAGAAAGTGCAGAACCGAAGGCTGTGGCAA
GCATCCGTCGTATGGAGTGGCAGGTACGAAAACTGCAGAGTACTGTGCAC
AACACGGACTAAACGGGATGGTCAACGTCTACAGCAGAAAGTGCAGATCT
GAAAGCTGCGGCGAGGTGCCGTCGTTTGGAGTGACAGGTACGAAAACTGC
GGAGTACTGTACACGGCACGCACCGGACGGAATGGTCGACGTCAAGAGCA
GAAAGTGCAGAACCGAAAGCTGCAAAAAGTGTCCGTCGTTTGGAGTGGCA
GGTACGAAAACTGTGGAGGACTGTGCACAGCACGCACCGGACGGGATGGT
CGACGTCAAGAGCAGAAAGTATAGAACTGAAGGCTGTGGCAAGCAAGCGT
CGTTGGGAGCAGCAGGTACGAAAACGGGAGAGTATTGCTCACAGCACGCA
CCGGACAAGATGGTCAATGTCTACAACAAGAAGTGCAGAACTGAAGGCTG
CGGAAAGAGGCCGTCGTATGGAGTGGCAGGTACGGAAACTGCGGAGTACT
GTACACAGCACGCACCGGACGGGATGGTCGACGTCAAGAGCTTACAGTGT
AGAACCAGGGGCTGCGGCAGGAAGCCGTCGTTTGAAGTAGGCAACACAAG
GACGGCGGAGTACTCTACACAGCACGCCTGTCTTAAATGCGGTGTCGGAG
GATATAGGGAGGGAGAAGTTGACCCACACCATTCCGGGAAGGAAACCATT
GGTAACATACGTCCGAACGGCGTTGAATGTCAAATCGTCCATCCTCCTGC
CAACACAAACCCTCCGTCGGAAGGTAGCCAGGGCTCTCGTAAGCGAGAAC
GTTACCCAGAAGTGATGTCTACGGCCTCGATGCGACCTATCTCACGAGAG
TCGGCTGGAAGAGCGGGGACTATGCAGGATATTGACGGAAAAAGACCTCC
CGTTGAACGAGATTCTTCCGTGAAGGTGGAGGTGCAGCTCTCCATGTAGC
CAGGTACACTATACGTGACCTCAAGCTCTATCTACGTAATATTAGTTTAA
TATCCTTGCCGTCGTCTTCCTCGCTGAGTTGTATTCTGTTGCTTATAGGA
CTACCTTTCTTGGGTGGCCTGCTGACGAGAATGTACTTTTTGCCCTACGC
GTATCATGTGGTTGTCTTTTGTTTGTCTCTTCTGTTTATATTTTTGTTTG
TGTTTTTGTTTCTTGTCTATTTATTTTTATTCTGCGCCTCTTCTGTGTCC
CTCCCTGGCGTCGATGTCCTTTGCTGGCTACTTTCCTGCCCGTTTTCTTC
TGTCTGCTTTCCCATTTTTTTATCTAGAAATGTTCCTGGTTTGGTTTGGT
TTGTTACTGGGTCCGTGGGTCACATGAAACTACAGCCTCGTCTTATGATC
GAGCCTAGTAGGGCGAGGGTGCCCGACAAAAGCATCGCGCAGTCCACGCT
GG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig945:181029..183730-

>mRNA_A-nodosum_M_contig945.13.1 ID=mRNA_A-nodosum_M_contig945.13.1|Name=mRNA_A-nodosum_M_contig945.13.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1110bp|location=Sequence derived from alignment at A-nodosum_M_contig945:181029..183730- (Ascophyllum nodosum dioecious)
ATGGTCAACGTCTACAGCAGGAAGTGCAGAACTGAAGGCTGCGGCAAGCA
ACCGTCGTATGGAGTGACAGGTACGAAAACTGCGGAGTACTGTGCTCAGC
ACGCACCGGACGGAATGGTCGACGTCAAGAGCAGAAAGTGCAGAACCGAA
GGCTGTGGCAAGCATCCGTCGTATGGAGTGGCAGGTACGAAAACTGCAGA
GTACTGTGCACAACACGGACTAAACGGGATGGTCAACGTCTACAGCAGAA
AGTGCAGATCTGAAAGCTGCGGCGAGGTGCCGTCGTTTGGAGTGACAGGT
ACGAAAACTGCGGAGTACTGTACACGGCACGCACCGGACGGAATGGTCGA
CGTCAAGAGCAGAAAGTGCAGAACCGAAAGCTGCAAAAAGTGTCCGTCGT
TTGGAGTGGCAGGTACGAAAACTGTGGAGGACTGTGCACAGCACGCACCG
GACGGGATGGTCGACGTCAAGAGCAGAAAGTATAGAACTGAAGGCTGTGG
CAAGCAAGCGTCGTTGGGAGCAGCAGGTACGAAAACGGGAGAGTATTGCT
CACAGCACGCACCGGACAAGATGGTCAATGTCTACAACAAGAAGTGCAGA
ACTGAAGGCTGCGGAAAGAGGCCGTCGTATGGAGTGGCAGGTACGGAAAC
TGCGGAGTACTGTACACAGCACGCACCGGACGGGATGGTCGACGTCAAGA
GCTTACAGTGTAGAACCAGGGGCTGCGGCAGGAAGCCGTCGTTTGAAGTA
GGCAACACAAGGACGGCGGAGTACTCTACACAGCACGCCTGTCTTAAATG
CGGTGTCGGAGGATATAGGGAGGGAGAAGTTGACCCACACCATTCCGGGA
AGGAAACCATTGGTAACATACGTCCGAACGGCGTTGAATGTCAAATCGTC
CATCCTCCTGCCAACACAAACCCTCCGTCGGAAGGTAGCCAGGGCTCTCG
TAAGCGAGAACGTTACCCAGAAGTGATGTCTACGGCCTCGATGCGACCTA
TCTCACGAGAGTCGGCTGGAAGAGCGGGGACTATGCAGGATATTGACGGA
AAAAGACCTCCCGTTGAACGAGATTCTTCCGTGAAGGTGGAGGTGCAGCT
CTCCATGTAG
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