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Homology
BLAST of mRNA_A-nodosum_M_contig944.33.1 vs. uniprot
Match: A0A6H5KKS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKS6_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 3.660e-12 Identity = 128/457 (28.01%), Postives = 171/457 (37.42%), Query Frame = 1
Query: 76 EAEFRRGPFGHGPRAFAKVVERVTARLQSRLARERAP-SAAAALADAVDKAWRETYAGPLPTEKEVLQQRFKIL--GGRAKRSTQGASGAVQETAAGP---SLMRK------------------RRFVLKALRKNGKKRKRTRMGGNDGVSAEE----RDGAAGRNAEDESMPQDKVGRAAEEEHTVDSDG-----AGAPRRIDEERGCCNIACAKGDDKGADGCTGHGSRAGSV-----------------------------------------------------------EVSSAXXXXXXXXXXXXXXXXXXXXXXDTDESRKPALDPGRGGVE-----KQGSERTGFEEKKGPASPG-----------------ADAGHDSEGHAKSEVEEE--------AEPPDVIVTANFVGDLKKGALSKRKKWRVVLEGGALEGYGGVLVFDKCMCS 1080
EA GP+G+G RAFAKVVE VTARL++RLA +AAAA+A V++AWR+ Y PLP+E EV+ + + R R + +S + T A P SL RK R+FVLKA+ N KR R+G + V+A R A D + + +V A T +DG AGA R + G G +K A G G G +V+ T +PA D RG E K+ S G + G ++AG D A S V+EE + PDVIVTAN+VG K R+KW++ LEGGA+EG G V VFD+C C+
Sbjct: 28 EALLTSGPYGYGSRAFAKVVETVTARLETRLAAAGGDRAAAAAVAGKVNEAWRDMYNRPLPSEAEVMHRILTVAPADARPSRRSSASSDLWRSTGAWPQTASLPRKNEQSIATADAATATRTPKRKFVLKAIAAN----KRHRVGSTNAVAAARVNMRRANTAATAENDPTAERRRVAAAP----TQGADGRVSLAAGAGARPNSGSGEIG-----GGEKTAAGAQGRAVAQGXXXXXXXXXXXXXXXXPRLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTPSSHGEGREKQVTITDECAEAAPAGQGRTAQADGRQPATAIGDEPARDEERGADEFDLGPKKSSSYCGVQSSTIRGGDGNQVDGGGXXXXXXXXXXSEAGADKPKEASSSVDEEDGRKEEADSTVPDVIVTANYVGKFLKNRT--RQKWKLKLEGGAIEGEGLVFVFDECNCN 469
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1634 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Cds size | 1041 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680870441.7314134-UTR-A-nodosum_M_contig944:288525..288579 | 1680870441.7314134-UTR-A-nodosum_M_contig944:288525..288579 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig944 288526..288579 + |
| 1680870441.7978153-UTR-A-nodosum_M_contig944:294658..295197 | 1680870441.7978153-UTR-A-nodosum_M_contig944:294658..295197 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig944 294659..295197 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680870441.743655-CDS-A-nodosum_M_contig944:288579..288654 | 1680870441.743655-CDS-A-nodosum_M_contig944:288579..288654 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig944 288580..288654 + |
| 1680870441.758483-CDS-A-nodosum_M_contig944:292771..292864 | 1680870441.758483-CDS-A-nodosum_M_contig944:292771..292864 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig944 292772..292864 + |
| 1680870441.7714064-CDS-A-nodosum_M_contig944:293454..293586 | 1680870441.7714064-CDS-A-nodosum_M_contig944:293454..293586 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig944 293455..293586 + |
| 1680870441.7854836-CDS-A-nodosum_M_contig944:293917..294658 | 1680870441.7854836-CDS-A-nodosum_M_contig944:293917..294658 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig944 293918..294658 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig944.33.1 >prot_A-nodosum_M_contig944.33.1 ID=prot_A-nodosum_M_contig944.33.1|Name=mRNA_A-nodosum_M_contig944.33.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=347bp
MPKETEKEAEFRRGPFGHGPRAFAKVVERVTARLQSRLARERAPSAAAAL ADAVDKAWRETYAGPLPTEKEVLQQRFKILGGRAKRSTQGASGAVQETAA GPSLMRKRRFVLKALRKNGKKRKRTRMGGNDGVSAEERDGAAGRNAEDES MPQDKVGRAAEEEHTVDSDGAGAPRRIDEERGCCNIACAKGDDKGADGCT GHGSRAGSVEVSSASTACAQGDGGASTGERGEGGRADTDESRKPALDPGR GGVEKQGSERTGFEEKKGPASPGADAGHDSEGHAKSEVEEEAEPPDVIVT ANFVGDLKKGALSKRKKWRVVLEGGALEGYGGVLVFDKCMCSFVSS* back to topmRNA from alignment at A-nodosum_M_contig944:288526..295197+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig944.33.1 ID=mRNA_A-nodosum_M_contig944.33.1|Name=mRNA_A-nodosum_M_contig944.33.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6672bp|location=Sequence derived from alignment at A-nodosum_M_contig944:288526..295197+ (Ascophyllum nodosum dioecious) CCCCACAGAAGCACGAAGACGAAACACCGTCGGAACGCAGACCTATATTC
AAACATGCCGAAGGAAACGGAAAAAGAAGCGGAGTTCAGGCGAGGGCCAT
TCGGACACGGACCAAGGGCTTTTGCGAAGGTAAGATCGTGTGTGTGAGAA
CGCAAGCACTTCGGGGGCATCTATCTTCTATTGTCAGAAAGAGAGAAGTT
GTGTTTGCAGATTTTTCAGGAAAAAGCGGCGGCGGAGGACACATGAAGTT
CAGATTTCGTCGTACCGTACAGCATGTACAGAGCAGCCTACGTGTGGTAT
GTTTACATTTTCATATTGAACAATACCCCACAATCCGGTCCTGTCCTTTC
CACTCATTCTATGATACTGTTCAGCAGACCACGAGCGGGATTGGCCACCG
TGTAAAGTAGTTTTTTCGGGTTGGCAACCAATGCGCTGAATGTGAGAAAC
AACCACAACAATGGGGTATGCTCAGAAGGTCTAGGTGCGTTCTGATTTTT
CTTTAAACAACAGTGTAACAACGATGTAACAACAATGTACACGCAGATGC
TGTCACGAAAAAATGTCTCATGAGACGCGTCAAAGGAGATACACTCTCTA
TACATAGCCTCCAACACCTTGCGCTCCCCTCTCCGCTTCCTGGTTGCCGT
CTTGCTAAATAGTCTGAACCGGCATCTTCTGTTCTACTCTGTTTATCCGA
CGCTTTCTTTTCCTGCAACCCGACTCCCTCGCGTTTTCTGATTCCCCTCT
TCAACGCTTCGGCGGATTCTCGACCATCATTCCCGGTTTCCTCTACTCGC
TGTACTTGCGCCTCCCCTGTCGCCCCTGGGATTTGATCCCCCCATTGGCG
CGGCGTGATCGCCCCGGTGTCAGATCTTGCGACTGAGGCTGTTGGTCGCC
CGTATTCGTCACCCCTTCTTCCACATGTTCTACCCTGCTTCTATCCTTCT
ATCAAGATGTAGCAGATTGCCGAGCTCTCTTCCCTCCCGCACACCCCCTC
TCTATTATCGTCCTGTTTGTCGTCCCCATTCCCGTCCCTGTTTCCGTTCC
TGCTCCCGCCCCCGTCCCCGTCTCCGCAACTGCCCTCGTTTCTGTCCCCG
TTACCCTGCTGTCCGAAACTCGCTTACGGGCTTTTCTTATGCCAGCTGTA
TCCGCAGTGCCCGAAAACCTTGTATCATGGCGAGCTGCACAGCGAAGGTT
ACCTGCAGCAGCACGATTATAGGTCGAGCGGTATAACTTCGAAAGTCTCA
TCAATTTATGTGGGTAATCAAGTATTCCGTGAGTGGATCAACACAACCCC
AGGGACAGTCCATGCCGCGGGCTGAAACTCGATGGAGCCCATGGCGGACA
GGTGTATAGCCCGGCGGACGAACAGCTTGTATTTATGTGAGGTCTAAAAC
AGCTGCTTTAGCTGATGGTGACTGTATGAATCGTTTTCGAACTAAGCGCG
CGTGATTGTTCAAGGTGTGAACATGTTGGAAAATGACACCTTAACTATTA
CAGACCACAAGACGTTCGGAGACCTTTTTCCCCAAACGCCGAAGCATTTC
CAACTTCGAAAAGTCGTTTCGACCGGTCCTAAGAAACATCAGCAACAACC
TCTGATTCAACCCAACCTGCCTTCCAAGGATATGAAGTGGGTTCGAAGGA
CGGTGTGTTTCTCGCTGATATGATCGGTCTCATCTCAAGGCGAAGTATGA
TCGGGAGCAATTTGAAAGTCAACAAGATCTACCCGTCGATCAACTAATAA
AATACGCAATGGATAACCACTACGCACGGTCAGTCCGCAGTTCGTGACCT
GGACTCATCACAGGAGGGTTTCGATTTTGAGCACAGTACGCTGGTTCCCG
TAGCGGAAATCTTGGGAGCACGAGTAAGCGAAGTTAAGCCCATCGGTTTA
TGCTGAACTCGCATCGCGATAACGAAATCGTGGGCGTGAACCGGGCAGAG
ATGTGTTGATCCTTGGCTGCAGTAGGAGGTGAGGTCGGTCATCTATCACG
TTGATTTGCCCCATATAGCAAAAAAAAAAGTTACTGTTGAATCATATCAT
TGTTTTAACATTCCGCCCCTTCTTGGTGGAGTCGAGACGCCGTAAGCCAT
GTTTCTGGGAAGCTCAGCGCTGTGCTCTCATAGATCTATCGTGTTTGTTG
TTGCTGTGTACTCAGTTTTGTGGAGAAAATATGGCGGCGATGACCTTTCG
CAGGGTTTTGCTTGCTCTATGTATGCCCTGTAAATATGCAGACGATGGCA
GCGTCGGCCAACGCGTACAAAGAGGGAAGTTTCCGGCAGCTAGGGAAGGG
TCAGGTTCCTCAGAAGAAAAAACCGACCACACTACTACCTATGGCCTTGG
GAAAAGACAGACGCAAACGACCCGCCTACGCAGTGAATAAGGAGAGGTCA
TCCGTCGAGCGTGCCTGAAGTCCTAAGATCCTCCAAGGCCTTTCCAAGTT
GGAACCTCCGGGCTTGAGTTGACGACGCCTTGCCTAGGAAGCGCCGGTGG
GGTGCTGTAGGCGACGATGCTTCTGCAGCACGCCAATGAACCTTGGAGGT
TGGAAGCTGTTTCATCGTGCGAAAGAACGAGCTGCAGGCAGCGGTCGTTT
TACTGTCGTGGATATGATGACGAAATACTAGACTCTTTACAGCAACAAGC
AATACAGTACAGCAGCACGAGGGTGAGCTTCGCCTTTTCTTAGCAGCAAT
GCTGTTCTTACGGGAACGCGCGCCTGCCAAATTGCTGCCCTTGAGCGGCG
GCGAGCTTTTTTTCTCTAGGTAGCGGTGAGCGGCGGATCCCAACGAATAT
CAGCGGAATATTCATGGTGTAAACTTGTACTTGGTGTTTCTGAACTGAAA
AATCGTGTCGAACCGAGTTGAGCGCGAAAACGCCTCCTTCGATTCGTAGC
AGGCAGCGCTGTGGCAAGCACGTGACCTCCGATGGTCTGTAGGACTCCTG
GGAACCGACGTAACTCTGTTTCCCAAGAATTCCTTTCCTGCACTGCTCTT
TGTCGTCTGAGGCTCTCGAATTGTGTTTTACAGTATGTATGTATTGTATG
GTCATCACATATTACATATAGTAGAATATGGATCAACCGGGTAAAGTTTC
CAATACTACTCGTAGTCAATTGAACAGGGGAAAATAAAATTTCCCTGTCC
CCGCCCAACAGTAATGAATAATCAGTACCAGCACCTATCCTTGAGCACAT
GTCAACATCTCCTAAGGCCTAGCGTTGCTCGAGGAGAACCGCAACCTACC
CTCTCCCTCTACTTTCTCCGAGAGGATGTGTCCACCGTTGGGAGGTCGTT
CCTCGTTCCTTCCCTGCCAAGCTCGGTCCGTCTCTTGTTCGGGAGCGTTC
TGTAGTTTTTGGGTTGAAACCCCTCTAATCCAGTTTCCTCCCAAGGAGGC
TCAATGATATACCAGGTACCTATTAAGAAAAACTCGTGAGTCTATGTGTG
TGAGAGAGTGTGAGTGCGAGAGGGCACGTGTGTGCGCGCGCTTGTGTTTA
CTCCAACTGTTTTGGTATTTGAGCGTATATTGTTACTGGATGCGCGTAAC
AGCGTACTCCGGCCTTGCCATGCTTAGGCCGACAGGCGACTGAGGAGAGC
ATCGTGACATTGACAGTATTGGCTCAGGGTCTCGAAGACCCTGTTTGTAT
GCGTACCTGCATTTTCTCCTATGTATGCATGTATGGCCACACGTATAGCA
AGAGTATGGATTAACCGGGTAAGGTTGCCAATCCTGCTCGTGGCCAGCTG
AACAGGGAAAATGAATATTTCCCTGTCCGCGTTCGCGCCTGAGAATTTGG
TCTCGCGAGAGGGGTTCGGCAGTCCCGTCCCGCGTCAGCCTGCTCATCTC
CACACTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTCCCGAACTCC
GCGGCGGCGTCCATTTATTTATTTAAAACCTCCATACGTCATCGAATCAG
TCCCGAGTTTATCGGGTCACGCAATTGCGTACCGATGGCGTTCACTGCCG
AGAGTCCGCTGGCACAGGGCCAGTAGTCCCCAAGGTAGTTCCAGTAACGG
GTGCTGCCTTGGCATCTCACCATGGACCAATTAATATGCGCCTCTCTTTC
CCACACCCACTATTGGGTATGAAGTGGGCATGTTGAAAGTACCGTATGGT
GGTATATCAACCACCAAAAACTCTTACCCTTCTTGCCAGCCCCAACTTTC
GTTAACGACGGACCGCTTTGCCTACTAAACGCATTTGCTGTAACAGGTGG
TGGAGCGAGTGACCGCTCGCCTACAGTCGCGCTTGGCTCGTGAGCGGGCG
CCTTCCGCAGCCGCCGCCCTGGCTGATGCCGTTGACAAGGTGAAGTACTG
GGGGATGAGATCCATGCACCTGCGGTATAATAAGGGTCAGAAATGGCTGC
AGAACCGTATAAGCTACTCAACTGGGGATGGTTTGCAACATTAATAGTTT
CCGAACAAATGACGACGCAAATGACCACAAGCCATAGAGACCCCAGGCGG
AGGGCAAGTACCGAGAACGTCTGGTGGCAAAACTGCAGCGGGCGGTCGGC
GGGTCAGCATCGAGGGTTGGGTTGGAAACATAGCAGGCGGGCGTACTTCG
TCTCTCCGAACCTTCTTCCTGAGTTACTTGCCGAGCCGCGGACCGAGCAC
CATCATGCATTGTGGCGCATACGAATTTCGCATGCTGACGCCACTTACTA
TAAGACCATGTTGCTGCATGCATACATTCGATGCAGCTGCCTTCCCAGTT
CTTCAACCAAACACTAAGCAATCATAAAACTGCGAACTCAAGCCCCCCCC
CTACACACACGCACAAATACACAAGTATCTGCTGTTCATTAGGATATGAC
GGGATCCTTGGCTCCCAAGATTCTGACTTAATGATCCACCTTACAGCACC
ACTTCGTGCGGTTGTGACTCTCGCCGCAGGCATGGCGAGAGACATACGCC
GGGCCTCTGCCGACAGAAAAGGAGGTGCTCCAACAGCGGTTCAAAATTTT
GGGGGGTAGAGCCAAACGCTCCACACAGGGGGCCTCCGGAGCGGTGCAAG
AAACTGCCGCGGTGAGAGGAAGGGAAGCGTTTCACCAAGATCTTGTAGCG
GCGCTTACGAAAGCGAGGACGTGCCGTGGTTTTCTATTTTGTGGCTGCCG
TTGAACCCCCCGGTATTTTCGGCGGTTTTGATGATCAATGCTCCGCATGG
TTGTGCCGCTGCAAACCAGGAGAGAGCGTACTCGCCATCTTTGATTGGTT
GGATGTACGAGGGGTCAACGCAGCGTGAGAGGCTGGCAGGCTCTTGCATG
CTTCACTTAGCCCTTCGTCTCAAAAACGTTCCGTACGGTACACGTTGTCT
CACCCAACCGGCGTTTGGCGCTTGTTCGTGGTCCTGGCGCAGGGTCCCTC
CCTCATGCGCAAGAGACGATTCGTGCTGAAGGCGCTGCGAAAGAACGGTA
AGAAGCGCAAGCGAACGCGTATGGGTGGCAACGATGGCGTTTCCGCTGAG
GAGCGTGACGGCGCAGCAGGGCGGAATGCTGAGGACGAAAGCATGCCTCA
GGACAAAGTGGGGAGAGCAGCGGAGGAAGAGCACACCGTGGATTCGGACG
GGGCCGGAGCTCCGAGAAGGATTGACGAAGAACGCGGGTGCTGCAACATC
GCGTGTGCAAAAGGGGACGACAAAGGCGCTGATGGCTGTACAGGGCATGG
GTCAAGGGCTGGCTCAGTGGAAGTTTCGTCGGCGTCGACCGCCTGTGCAC
AAGGAGATGGCGGGGCTTCCACAGGAGAGAGGGGTGAAGGGGGAAGAGCT
GATACAGATGAGAGCCGGAAGCCCGCCCTGGATCCGGGTAGAGGAGGGGT
AGAGAAGCAGGGATCCGAGAGGACGGGCTTTGAGGAGAAAAAGGGTCCCG
CTTCACCTGGGGCGGATGCAGGGCACGATAGCGAGGGGCACGCGAAGAGC
GAGGTGGAGGAGGAAGCCGAACCCCCGGACGTAATCGTTACCGCTAATTT
TGTGGGAGACCTTAAGAAGGGCGCATTGTCCAAACGCAAAAAGTGGAGGG
TGGTGTTGGAGGGAGGGGCACTCGAGGGTTACGGGGGTGTCTTGGTTTTC
GACAAGTGTATGTGCTCGTTCGTTTCTTCATGAGACTCCCGATGCCGCCT
AGCGTTCAAGTATGTGTTTCTAAGAATTCTGAACTAGTTGTCGTTTTTAA
GAATTCAGGGCACGTGGAGAACAAACTTTGGATGTTTTTTCCATTTCTTG
GCCGTCTCGCGAGGGTGCTGCTGTGCCAGCAGTACGCGTCGCAGCCGCGA
CACCGCTTCACAACAATCTTGACGATGGTGGCGCTCGCTCTCTCGGAAAT
ATAACTTGAGCTCATATTTTCCCATGCCAGGGTATCGGACTTAGCACGGT
CTCCTGAAACAGCTGGTTGAATACCAAATGTAGGCCCAATTCCCGTTCAA
CACTTTCCCTATGATTGACATTGCTTTGATAGATTTTATGATTTTTCACT
ACGTCCCGTTTTTATATTTCGACGCGATTCTGCTGACTCGATAGCTCGTC
CTCGCAGCATTCCAGCTCGCTTTTGCGTCCGAGCTAACGTCCGTAATATA
ACGCCTCCTCGCTGTGCACACACACAATACTTTGCGCGTTCCGCGGTAAA
GCGCCGCGTTTTTGCAGGGGGG back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig944:288526..295197+ >mRNA_A-nodosum_M_contig944.33.1 ID=mRNA_A-nodosum_M_contig944.33.1|Name=mRNA_A-nodosum_M_contig944.33.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1041bp|location=Sequence derived from alignment at A-nodosum_M_contig944:288526..295197+ (Ascophyllum nodosum dioecious) ATGCCGAAGGAAACGGAAAAAGAAGCGGAGTTCAGGCGAGGGCCATTCGG ACACGGACCAAGGGCTTTTGCGAAGGTGGTGGAGCGAGTGACCGCTCGCC TACAGTCGCGCTTGGCTCGTGAGCGGGCGCCTTCCGCAGCCGCCGCCCTG GCTGATGCCGTTGACAAGGCATGGCGAGAGACATACGCCGGGCCTCTGCC GACAGAAAAGGAGGTGCTCCAACAGCGGTTCAAAATTTTGGGGGGTAGAG CCAAACGCTCCACACAGGGGGCCTCCGGAGCGGTGCAAGAAACTGCCGCG GGTCCCTCCCTCATGCGCAAGAGACGATTCGTGCTGAAGGCGCTGCGAAA GAACGGTAAGAAGCGCAAGCGAACGCGTATGGGTGGCAACGATGGCGTTT CCGCTGAGGAGCGTGACGGCGCAGCAGGGCGGAATGCTGAGGACGAAAGC ATGCCTCAGGACAAAGTGGGGAGAGCAGCGGAGGAAGAGCACACCGTGGA TTCGGACGGGGCCGGAGCTCCGAGAAGGATTGACGAAGAACGCGGGTGCT GCAACATCGCGTGTGCAAAAGGGGACGACAAAGGCGCTGATGGCTGTACA GGGCATGGGTCAAGGGCTGGCTCAGTGGAAGTTTCGTCGGCGTCGACCGC CTGTGCACAAGGAGATGGCGGGGCTTCCACAGGAGAGAGGGGTGAAGGGG GAAGAGCTGATACAGATGAGAGCCGGAAGCCCGCCCTGGATCCGGGTAGA GGAGGGGTAGAGAAGCAGGGATCCGAGAGGACGGGCTTTGAGGAGAAAAA GGGTCCCGCTTCACCTGGGGCGGATGCAGGGCACGATAGCGAGGGGCACG CGAAGAGCGAGGTGGAGGAGGAAGCCGAACCCCCGGACGTAATCGTTACC GCTAATTTTGTGGGAGACCTTAAGAAGGGCGCATTGTCCAAACGCAAAAA GTGGAGGGTGGTGTTGGAGGGAGGGGCACTCGAGGGTTACGGGGGTGTCT TGGTTTTCGACAAGTGTATGTGCTCGTTCGTTTCTTCATGA back to top
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