mRNA_A-nodosum_M_contig944.11.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig944.11.1
Unique NamemRNA_A-nodosum_M_contig944.11.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig944.11.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 3.440e-63
Identity = 116/302 (38.41%), Postives = 175/302 (57.95%), Query Frame = 1
Query:   10 ADPCVFRKFAAGKMEAILAVYVDDLLALTVTKEAMETFVRELRSTLKIKDLGGTSYYMGCHITRDRAKKVLKFDQHIYARTITERFGIGETAMVPVTEGVKPLSKEHGLKTTEEKEEMTKIPYREAVGALMCTSTMTRPDISSAVRSVAKFCENPGMAHWKAVAKILQFVRRTPERGIIYGGDGNGRAVMRVFVDLGHATCLDTRRSTSGGAVLLGGGAISWFSGAQVTTAEGTSEAEYVAMSEIVKEVQLSRQIKAFIMPALKSNPVDIVEDNQGAIKTANDRHSSKRARHIDIKHHLIRD 915
            AD CVFR    G++   L V+VDD+ ++   +E  + F R+L + +++K+LG   +Y GC   RD     LK  Q  YA  +   FG+     +P+  G+K       L   ++ EE+   P+RE +G+LM  +T TRPDI++AVR+VA++C +P   HW+A   IL +V RT + GI +         M VF D  +A+    RRS SGG V+ GGG ISWFS  Q      T+EAEYV++++++KEV   RQ+  F++P      + + EDNQGAI+ A +  S+   +HID++HH IR+
Sbjct:    2 ADTCVFRLIEEGRVVVTLVVHVDDIFSIG-EEERYDQFGRDLNTMVRVKNLGDLIWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGMK-------LSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNLKHIDVRHHFIRE 295          
BLAST of mRNA_A-nodosum_M_contig944.11.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 6.580e-63
Identity = 118/305 (38.69%), Postives = 177/305 (58.03%), Query Frame = 1
Query:    1 QSRADPCVFRKFAAGKMEAILAVYVDDLLALTVTKEAMETFVRELRSTLKIKDLGGTSYYMGCHITRDRAKKVLKFDQHIYARTITERFGIGETAMVPVTEGVKPLSKEHGLKTTEEKEEMTKIPYREAVGALMCTSTMTRPDISSAVRSVAKFCENPGMAHWKAVAKILQFVRRTPERGIIYGGDGNGRAVMRVFVDLGHATCLDTRRSTSGGAVLLGGGAISWFSGAQVTTAEGTSEAEYVAMSEIVKEVQLSRQIKAFIMPALKSNPVDIVEDNQGAIKTANDRHSSKRARHIDIKHHLIRD 915
            Q  AD CVFR    G++  I+ V+VDD+ A+   KE  + F  +L   + +K+LG   +Y  C   RD  + +L+  Q  +A  +   +GI     VP+   VK       L   +E E    +P+RE VG+LM  +T TRPDI++AVR+VA++C +P M HWKA   IL +VRRT   GI +         M+VFVD  +A+    RRS SGG V+ GGG ++WFS  Q      T+EAEYVA+++++KEV   RQ+  F++P      + + EDNQGAI+  ++  ++  ++HID++HH IR+
Sbjct:   38 QCLADACVFRLMEEGRVIMIIVVHVDDIFAVG-QKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVK-------LTDFDENEASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRE 334          
BLAST of mRNA_A-nodosum_M_contig944.11.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 8.350e-63
Identity = 118/305 (38.69%), Postives = 177/305 (58.03%), Query Frame = 1
Query:    1 QSRADPCVFRKFAAGKMEAILAVYVDDLLALTVTKEAMETFVRELRSTLKIKDLGGTSYYMGCHITRDRAKKVLKFDQHIYARTITERFGIGETAMVPVTEGVKPLSKEHGLKTTEEKEEMTKIPYREAVGALMCTSTMTRPDISSAVRSVAKFCENPGMAHWKAVAKILQFVRRTPERGIIYGGDGNGRAVMRVFVDLGHATCLDTRRSTSGGAVLLGGGAISWFSGAQVTTAEGTSEAEYVAMSEIVKEVQLSRQIKAFIMPALKSNPVDIVEDNQGAIKTANDRHSSKRARHIDIKHHLIRD 915
            Q  AD CVFR    G++   L V+VDD+ ++   +E  + F R+L + + +K+LG   +Y GC   RD     LK  Q  YA  +   FG+     +P+  G+K       L   ++ EE+   P+RE +G+LM  +T TRPDI++AVR+VA++C +P   HW+A   IL +V RT + GI +         M VFVD  +A+    RRS SGG V+ GGG ISWFS  Q      T+EAEYV++++++KEV   RQ+  F++P      + + EDNQGAI+ A +  S+  ++HID++HH IR+
Sbjct:  100 QCMADTCVFRLIEEGRVVVTLVVHVDDIFSIG-EEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-------LSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRE 396          
BLAST of mRNA_A-nodosum_M_contig944.11.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 1.180e-62
Identity = 119/305 (39.02%), Postives = 178/305 (58.36%), Query Frame = 1
Query:    1 QSRADPCVFRKFAAGKMEAILAVYVDDLLALTVTKEAMETFVRELRSTLKIKDLGGTSYYMGCHITRDRAKKVLKFDQHIYARTITERFGIGETAMVPVTEGVKPLSKEHGLKTTEEKEEMTKIPYREAVGALMCTSTMTRPDISSAVRSVAKFCENPGMAHWKAVAKILQFVRRTPERGIIYGGDGNGRAVMRVFVDLGHATCLDTRRSTSGGAVLLGGGAISWFSGAQVTTAEGTSEAEYVAMSEIVKEVQLSRQIKAFIMPALKSNPVDIVEDNQGAIKTANDRHSSKRARHIDIKHHLIRD 915
            Q  AD CVFR    G++  I+ V+VDD+ A+   KE  + F  +L   + +K+LG   +Y  C   RD  + +L+  Q  +A  +   +GI     VP+   VK       L   +E E    +P+RE VG+LM  +T TRPDI++AVR+VA++C +P M HWKA   IL +VRRT   GI +         M+VFVD  +A+    RRS SGG V+ GGG ++WFS  Q      T+EAEYVA+++++KEV   RQ+  F++P      + + EDNQGAI+ A++  ++  ++HID++HH IR+
Sbjct:  100 QCLADACVFRLMEEGRVIMIIVVHVDDIFAVG-QKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVK-------LTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRE 396          
BLAST of mRNA_A-nodosum_M_contig944.11.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 3.580e-61
Identity = 118/305 (38.69%), Postives = 177/305 (58.03%), Query Frame = 1
Query:    1 QSRADPCVFRKFAAGKMEAILAVYVDDLLALTVTKEAMETFVRELRSTLKIKDLGGTSYYMGCHITRDRAKKVLKFDQHIYARTITERFGIGETAMVPVTEGVKPLSKEHGLKTTEEKEEMTKIPYREAVGALMCTSTMTRPDISSAVRSVAKFCENPGMAHWKAVAKILQFVRRTPERGIIYGGDGNGRAVMRVFVDLGHATCLDTRRSTSGGAVLLGGGAISWFSGAQVTTAEGTSEAEYVAMSEIVKEVQLSRQIKAFIMPALKSNPVDIVEDNQGAIKTANDRHSSKRARHIDIKHHLIRD 915
            Q  AD CVFR    G++   L V+VDD+ ++   +E  + F R+L + + +K+LG   +Y GC   RD     LK  Q  YA  +   FG+     +P+  G+K       L   ++ EE+   P+RE +G+LM  +T TRPDI++AVR+VA++C +P   HW+A   IL +V RT + GI +         M VFVD  +A+    RRS SGG V+ GGG ISWFS  Q      T+EAEYV++++++KEV   RQ+  F++P      + + EDNQGAI+ A +  S+  ++HID++HH IR+
Sbjct:  274 QCMADTCVFRLIEEGRVVVTLVVHVDDIFSIG-EEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-------LSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRE 570          
BLAST of mRNA_A-nodosum_M_contig944.11.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 4.420e-59
Identity = 118/305 (38.69%), Postives = 177/305 (58.03%), Query Frame = 1
Query:    1 QSRADPCVFRKFAAGKMEAILAVYVDDLLALTVTKEAMETFVRELRSTLKIKDLGGTSYYMGCHITRDRAKKVLKFDQHIYARTITERFGIGETAMVPVTEGVKPLSKEHGLKTTEEKEEMTKIPYREAVGALMCTSTMTRPDISSAVRSVAKFCENPGMAHWKAVAKILQFVRRTPERGIIYGGDGNGRAVMRVFVDLGHATCLDTRRSTSGGAVLLGGGAISWFSGAQVTTAEGTSEAEYVAMSEIVKEVQLSRQIKAFIMPALKSNPVDIVEDNQGAIKTANDRHSSKRARHIDIKHHLIRD 915
            Q  AD CVFR    G++   L V+VDD+ ++   +E  + F R+L + + +K+LG   +Y GC   RD     LK  Q  YA  +   FG+     +P+  G+K       L   ++ EE+   P+RE +G+LM  +T TRPDI++AVR+VA++C +P   HW+A   IL +V RT + GI +         M VFVD  +A+    RRS SGG V+ GGG ISWFS  Q      T+EAEYV++++++KEV   RQ+  F++P      + + EDNQGAI+ A +  S+  ++HID++HH IR+
Sbjct:  795 QCMADTCVFRLIEEGRVVVTLVVHVDDIFSIG-EEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-------LSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRE 1091          
BLAST of mRNA_A-nodosum_M_contig944.11.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 2.470e-58
Identity = 111/286 (38.81%), Postives = 168/286 (58.74%), Query Frame = 1
Query:   58 ILAVYVDDLLALTVTKEAMETFVRELRSTLKIKDLGGTSYYMGCHITRDRAKKVLKFDQHIYARTITERFGIGETAMVPVTEGVKPLSKEHGLKTTEEKEEMTKIPYREAVGALMCTSTMTRPDISSAVRSVAKFCENPGMAHWKAVAKILQFVRRTPERGIIYGGDGNGRAVMRVFVDLGHATCLDTRRSTSGGAVLLGGGAISWFSGAQVTTAEGTSEAEYVAMSEIVKEVQLSRQIKAFIMPALKSNPVDIVEDNQGAIKTANDRHSSKRARHIDIKHHLIRD 915
            I+ V+VDD+ A+   KE  + F  +L   + +K+LG   +Y  C   RD  + +L+  Q  +A  +   +GI     VP+   VK       L   +E E    +P+RE VG+LM  +T TRPDI++AVR+VA++C +P M HWKA   IL +VRRT   GI +         M+VFVD  +A+    RRS SGG V+ GGG ++WFS  Q      T+EAEYVA+++++KEV   RQ+  F++P      + + EDNQGAI+ A++  ++  ++HID++HH IR+
Sbjct:    2 IMVVHVDDIFAVG-QKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVK-------LTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRE 279          
BLAST of mRNA_A-nodosum_M_contig944.11.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 2.960e-58
Identity = 114/305 (37.38%), Postives = 172/305 (56.39%), Query Frame = 1
Query:    1 QSRADPCVFRKFAAGKMEAILAVYVDDLLALTVTKEAMETFVRELRSTLKIKDLGGTSYYMGCHITRDRAKKVLKFDQHIYARTITERFGIGETAMVPVTEGVKPLSKEHGLKTTEEKEEMTKIPYREAVGALMCTSTMTRPDISSAVRSVAKFCENPGMAHWKAVAKILQFVRRTPERGIIYGGDGNGRAVMRVFVDLGHATCLDTRRSTSGGAVLLGGGAISWFSGAQVTTAEGTSEAEYVAMSEIVKEVQLSRQIKAFIMPALKSNPVDIVEDNQGAIKTANDRHSSKRARHIDIKHHLIRD 915
            Q  AD CVFR    G +  IL V+VDD+ A+   +E  + F  +L  ++ +K+LG   +Y GC   R++    L   Q  +   +   +G+     VP++ GVK       L   +  E  T+ P+RE VG+LM  +T TRPDI++AVR+VA++C +P + HW A   IL + RRT   GI +         ++ + D   A+    RRS SGG V  GGGA+SWFS  Q      T+EAEYVA+ ++VKE+   RQI  F++P +    + + EDNQGAI+ A +  S+  ++HID++HH +R+
Sbjct:  124 QCMADACVFRLIEDGCVVLILVVHVDDIFAVG-ERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVK-------LSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRE 420          
BLAST of mRNA_A-nodosum_M_contig944.11.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 5.210e-58
Identity = 115/305 (37.70%), Postives = 167/305 (54.75%), Query Frame = 1
Query:    1 QSRADPCVFRKFAAGKMEAILAVYVDDLLALTVTKEAMETFVRELRSTLKIKDLGGTSYYMGCHITRDRAKKVLKFDQHIYARTITERFGIGETAMVPVTEGVKPLSKEHGLKTTEEKEEMTKIPYREAVGALMCTSTMTRPDISSAVRSVAKFCENPGMAHWKAVAKILQFVRRTPERGIIYGGDGNGRAVMRVFVDLGHATCLDTRRSTSGGAVLLGGGAISWFSGAQVTTAEGTSEAEYVAMSEIVKEVQLSRQIKAFIMPALKSNPVDIVEDNQGAIKTANDRHSSKRARHIDIKHHLIRD 915
            QS +DPCV R     ++  I A++VDD+L    TK   E  V  L  +L  K+LG   +++GC I+RDR    ++  Q  Y R + ERF I  T+ +P        S  +  ++  E EE   +P+RE VG LM  +  TRP+ S+AVR+VA+    P  + WKA  KIL +++ T    + Y  D        V+VD   A+    RRS SG  VL+ G  +SWFS  Q   +  TSEAEY+AM + VKE      +  F+ P+ K   +D+ EDN+GAI  A +  SS R++HID++HH +R+
Sbjct:   46 QSLSDPCVLRFMMGDEVMGIFAIHVDDILY-AGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCEISRDREAGTIEISQESYIRNVLERFNICRTSSIPA-------SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVVGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEAFFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRN 342          
BLAST of mRNA_A-nodosum_M_contig944.11.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 1.630e-57
Identity = 117/302 (38.74%), Postives = 176/302 (58.28%), Query Frame = 1
Query:   10 ADPCVFRKFAAGKMEAILAVYVDDLLALTVTKEAMETFVRELRSTLKIKDLGGTSYYMGCHITRDRAKKVLKFDQHIYARTITERFGIGETAMVPVTEGVKPLSKEHGLKTTEEKEEMTKIPYREAVGALMCTSTMTRPDISSAVRSVAKFCENPGMAHWKAVAKILQFVRRTPERGIIYGGDGNGRAVMRVFVDLGHATCLDTRRSTSGGAVLLGGGAISWFSGAQVTTAEGTSEAEYVAMSEIVKEVQLSRQIKAFIMPALKSNPVDIVEDNQGAIKTANDRHSSKRARHIDIKHHLIRD 915
            AD CVFR    G +  I+ V+VDD+ A+   KE  + F  +L   + +K+LG   +Y  C   RD  + +L+  Q  +A  +   +G+     VP+   VK       L   +E E    +P+RE VG+LM  +T TRPDI++AVR+VA++C +P M HWKA   IL +VRRT   GI +         M+VFVD  +A+    RRS SGG V+ GGG ++WFS  Q      T+EAEYVA+++++KEV   RQ+  F++P      + + EDNQGAI+ A++  ++  ++HID++HH IR+
Sbjct: 1137 ADACVFRLMEDGCVIMIIVVHVDDIFAVG-QKERCDKFGSDLNEMVPVKNLGELRWYSACFYQRDLERGLLRISQQRFAEELAAEYGVEWGKSVPLPVSVK-------LTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRE 1430          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig944.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KR24_9PHAE3.440e-6338.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE6.580e-6338.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE8.350e-6338.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE1.180e-6239.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE3.580e-6138.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE4.420e-5938.69Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5KP70_9PHAE2.470e-5838.81Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG2_9PHAE2.960e-5837.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRE7_9PHAE5.210e-5837.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHY5_9PHAE1.630e-5738.74Integrase catalytic domain-containing protein n=2 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig944contigA-nodosum_M_contig944:70884..71798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog325452.fgenesh_scip_prom.46568.8151
PFAMsRVT_2
Model size915
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.8e-52
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHW0@4776|Peronosporales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size915
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870440.7434444-CDS-A-nodosum_M_contig944:70883..717981680870440.7434444-CDS-A-nodosum_M_contig944:70883..71798Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig944 70884..71798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig944.11.1prot_A-nodosum_M_contig944.11.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig944 70884..71798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig944.11.1

>prot_A-nodosum_M_contig944.11.1 ID=prot_A-nodosum_M_contig944.11.1|Name=mRNA_A-nodosum_M_contig944.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=305bp
QSRADPCVFRKFAAGKMEAILAVYVDDLLALTVTKEAMETFVRELRSTLK
IKDLGGTSYYMGCHITRDRAKKVLKFDQHIYARTITERFGIGETAMVPVT
EGVKPLSKEHGLKTTEEKEEMTKIPYREAVGALMCTSTMTRPDISSAVRS
VAKFCENPGMAHWKAVAKILQFVRRTPERGIIYGGDGNGRAVMRVFVDLG
HATCLDTRRSTSGGAVLLGGGAISWFSGAQVTTAEGTSEAEYVAMSEIVK
EVQLSRQIKAFIMPALKSNPVDIVEDNQGAIKTANDRHSSKRARHIDIKH
HLIRD
back to top

mRNA from alignment at A-nodosum_M_contig944:70884..71798+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig944.11.1 ID=mRNA_A-nodosum_M_contig944.11.1|Name=mRNA_A-nodosum_M_contig944.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=915bp|location=Sequence derived from alignment at A-nodosum_M_contig944:70884..71798+ (Ascophyllum nodosum dioecious)
CAGTCGCGTGCCGACCCTTGTGTGTTCCGCAAGTTTGCTGCTGGGAAGAT GGAGGCGATCCTCGCGGTATATGTGGACGACCTTCTAGCCCTGACCGTCA CGAAAGAAGCGATGGAGACTTTCGTCAGAGAACTGCGCTCGACGTTGAAG ATCAAAGATCTGGGTGGAACGTCATACTACATGGGCTGCCACATTACCCG AGATCGGGCGAAGAAGGTGCTGAAATTTGATCAACACATCTACGCTCGAA CGATCACTGAGCGATTCGGGATTGGCGAGACCGCCATGGTCCCAGTGACG GAAGGTGTGAAACCGCTGTCAAAGGAGCACGGCCTGAAAACCACCGAGGA GAAGGAAGAAATGACGAAGATCCCCTACCGAGAGGCAGTGGGGGCACTTA TGTGCACATCGACGATGACCCGGCCCGATATCTCGAGTGCGGTTCGCAGC GTGGCCAAATTCTGCGAGAACCCGGGCATGGCGCACTGGAAGGCCGTCGC AAAAATACTACAGTTCGTACGAAGGACCCCGGAAAGGGGGATCATCTACG GTGGAGACGGGAACGGCCGGGCAGTAATGCGAGTATTCGTCGACTTAGGC CATGCTACGTGTCTGGACACAAGACGATCGACCTCAGGTGGGGCGGTACT TTTGGGCGGTGGCGCTATCAGCTGGTTTTCGGGGGCTCAGGTGACCACCG CGGAGGGAACTTCGGAGGCAGAGTACGTGGCTATGTCGGAGATCGTAAAG GAGGTACAACTCTCCCGTCAGATAAAGGCCTTTATCATGCCTGCCCTCAA GAGTAACCCTGTCGATATCGTGGAGGACAACCAAGGGGCCATCAAGACGG CCAACGACAGGCATTCAAGCAAGCGGGCGAGGCACATCGACATCAAACAC CACCTCATCCGTGAT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig944:70884..71798+

>mRNA_A-nodosum_M_contig944.11.1 ID=mRNA_A-nodosum_M_contig944.11.1|Name=mRNA_A-nodosum_M_contig944.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=915bp|location=Sequence derived from alignment at A-nodosum_M_contig944:70884..71798+ (Ascophyllum nodosum dioecious)
CAGTCGCGTGCCGACCCTTGTGTGTTCCGCAAGTTTGCTGCTGGGAAGAT
GGAGGCGATCCTCGCGGTATATGTGGACGACCTTCTAGCCCTGACCGTCA
CGAAAGAAGCGATGGAGACTTTCGTCAGAGAACTGCGCTCGACGTTGAAG
ATCAAAGATCTGGGTGGAACGTCATACTACATGGGCTGCCACATTACCCG
AGATCGGGCGAAGAAGGTGCTGAAATTTGATCAACACATCTACGCTCGAA
CGATCACTGAGCGATTCGGGATTGGCGAGACCGCCATGGTCCCAGTGACG
GAAGGTGTGAAACCGCTGTCAAAGGAGCACGGCCTGAAAACCACCGAGGA
GAAGGAAGAAATGACGAAGATCCCCTACCGAGAGGCAGTGGGGGCACTTA
TGTGCACATCGACGATGACCCGGCCCGATATCTCGAGTGCGGTTCGCAGC
GTGGCCAAATTCTGCGAGAACCCGGGCATGGCGCACTGGAAGGCCGTCGC
AAAAATACTACAGTTCGTACGAAGGACCCCGGAAAGGGGGATCATCTACG
GTGGAGACGGGAACGGCCGGGCAGTAATGCGAGTATTCGTCGACTTAGGC
CATGCTACGTGTCTGGACACAAGACGATCGACCTCAGGTGGGGCGGTACT
TTTGGGCGGTGGCGCTATCAGCTGGTTTTCGGGGGCTCAGGTGACCACCG
CGGAGGGAACTTCGGAGGCAGAGTACGTGGCTATGTCGGAGATCGTAAAG
GAGGTACAACTCTCCCGTCAGATAAAGGCCTTTATCATGCCTGCCCTCAA
GAGTAACCCTGTCGATATCGTGGAGGACAACCAAGGGGCCATCAAGACGG
CCAACGACAGGCATTCAAGCAAGCGGGCGAGGCACATCGACATCAAACAC
CACCTCATCCGTGAT
back to top