mRNA_A-nodosum_M_contig9420.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9420.6.1
Unique NamemRNA_A-nodosum_M_contig9420.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9420.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9420contigA-nodosum_M_contig9420:6389..7075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LIA1
PFAMsUCH
Model size443
Max annot lvl2759|Eukaryota
KEGG koko:K11840,ko:K11869
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000981
EggNOG OGsCOG5077@1|root,KOG1866@2759|Eukaryota
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
Cds size357
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870439.406225-CDS-A-nodosum_M_contig9420:6388..66341680870439.406225-CDS-A-nodosum_M_contig9420:6388..6634Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9420 6389..6634 +
1680870439.4945247-CDS-A-nodosum_M_contig9420:6878..69891680870439.4945247-CDS-A-nodosum_M_contig9420:6878..6989Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9420 6879..6989 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870439.5097175-UTR-A-nodosum_M_contig9420:6989..70751680870439.5097175-UTR-A-nodosum_M_contig9420:6989..7075Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9420 6990..7075 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9420.6.1prot_A-nodosum_M_contig9420.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9420 6389..6989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9420.6.1

>prot_A-nodosum_M_contig9420.6.1 ID=prot_A-nodosum_M_contig9420.6.1|Name=mRNA_A-nodosum_M_contig9420.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=119bp
MPVLTVPRWFLDSLLEHSGKDEPACRQRKKTLDVSESMARKTAHRLIAHA
CFCQCQSKKEESALLIAAGSAFDSAFYAQKHIDTITGNSTFPTRSSSPTS
SHRPVPPAGCNVIASGVE*
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mRNA from alignment at A-nodosum_M_contig9420:6389..7075+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9420.6.1 ID=mRNA_A-nodosum_M_contig9420.6.1|Name=mRNA_A-nodosum_M_contig9420.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=687bp|location=Sequence derived from alignment at A-nodosum_M_contig9420:6389..7075+ (Ascophyllum nodosum dioecious)
ATGCCTGTGCTGACCGTGCCCAGATGGTTCCTCGATTCGCTGCTGGAGCA
CTCGGGGAAGGACGAGCCGGCATGCCGGCAGAGGAAGAAGACGCTAGATG
TTAGCGAGAGCATGGCCAGAAAAACGGCGCACAGACTCATCGCGCACGCG
TGCTTCTGCCAATGCCAAAGCAAGAAGGAGGAATCTGCCTTGCTCATCGC
CGCAGGCAGCGCTTTCGACAGCGCGTTTTACGCACAAAAACATATCGTAA
GAATTATTTAAATTTCACGCTTCGATCTGCTTTCCCTGCTTTTTCTCTCC
GAACGTGTCCCCGGTTTGATTTGGTATGGTTCCGTCTATCTTGTGACCAC
GGCTGGATTCGTAGCGGATCAGTAAATGTGAGATAAACAACACAAAAAAT
AGTTCAGACCGAATGATTATAAGCCAGTTCGTCCCGTACTTGCCCCGCCT
TCCATTGACCGAAATTGATCGAAGTTGATCAAAATTGCAGGACACCATCA
CGGGAAACAGCACATTTCCGACCAGAAGCTCAAGCCCGACCTCGTCGCAT
CGACCCGTTCCTCCCGCCGGGTGCAACGTCATCGCTTCCGGAGTAGAGTG
AAGTCACCGTCTTCGAGGCAAGGACGCGGGGGCGGCGATACGGGTGGGGG
GCCGTCTGTGACTATTTGAGGTGACGCCTCATTATGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9420:6389..7075+

>mRNA_A-nodosum_M_contig9420.6.1 ID=mRNA_A-nodosum_M_contig9420.6.1|Name=mRNA_A-nodosum_M_contig9420.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=357bp|location=Sequence derived from alignment at A-nodosum_M_contig9420:6389..7075+ (Ascophyllum nodosum dioecious)
ATGCCTGTGCTGACCGTGCCCAGATGGTTCCTCGATTCGCTGCTGGAGCA
CTCGGGGAAGGACGAGCCGGCATGCCGGCAGAGGAAGAAGACGCTAGATG
TTAGCGAGAGCATGGCCAGAAAAACGGCGCACAGACTCATCGCGCACGCG
TGCTTCTGCCAATGCCAAAGCAAGAAGGAGGAATCTGCCTTGCTCATCGC
CGCAGGCAGCGCTTTCGACAGCGCGTTTTACGCACAAAAACATATCGACA
CCATCACGGGAAACAGCACATTTCCGACCAGAAGCTCAAGCCCGACCTCG
TCGCATCGACCCGTTCCTCCCGCCGGGTGCAACGTCATCGCTTCCGGAGT
AGAGTGA
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