mRNA_A-nodosum_M_contig9420.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Match: D8LIA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA1_ECTSI) HSP 1 Score: 347 bits (891), Expect = 2.530e-105 Identity = 187/318 (58.81%), Postives = 221/318 (69.50%), Query Frame = 3
Query: 81 SGKPRAAALNRFFGGTLAYEKIPTGCLHRTNRSEPFTNVEVVISGKESLEESLASSVESELMTGDNKVVCYDCGEKKDARMRTCLERLPNLLILHLRRFGFDYSTMETVKLNDRCSFPMVLDVKPYTMKGLDEMEAIQKALQAAAEAPGGDLTIEQ-------------EDAGNYLYNLVGVLVHEGISKQGHYYSYIRDRRRNAYQGGDGKSQVDGASGSSTNSNGSGAGFMEGLG----------------RDVSAGASSV-GSEGVGEEKASWFKYDDDKVTRFDPREMETTCFGGVAGTTSNWQGVSTTVEHER 944
+GK AAL R FGGT ++KIPTGC HRTNRSEPF N+EV I GKESLEESLAS +ESELM GDNKV C DCGEKKDARMRTCLE LPNLLI+HL+RF DY T ETVKLNDRCSFPM+LD+KPYTMKG DE EA+++ALQAAAEA GGDLT+EQ EDAG+YLYNL G+LVH G+++ GHYYSYIRDR ++AY+ G G GA+ T + G + V GA+ V GSE + +W+K++DD VT FDP+E+E CFGG +TS WQGV+TTVEHER
Sbjct: 1433 AGKRSVAALERLFGGTWVHQKIPTGCSHRTNRSEPFINLEVNIRGKESLEESLASFLESELMAGDNKVDCEDCGEKKDARMRTCLEHLPNLLIVHLKRFELDYRTFETVKLNDRCSFPMLLDLKPYTMKGTDEREAMEEALQAAAEASGGDLTLEQVTKLHEEQSAKMKEDAGDYLYNLAGILVHAGVAQGGHYYSYIRDRGKSAYEDGAGPGARAGAADDKTRGDAGDGGRKRAXXXXXXXXXXXXXXXXXXKGVEGGAAGVRGSESAAGGQGAWYKFEDDDVTPFDPQEIEACCFGGTTLSTSTWQGVNTTVEHER 1750
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Match: A0A6H5KKZ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ1_9PHAE) HSP 1 Score: 318 bits (815), Expect = 4.120e-95 Identity = 187/361 (51.80%), Postives = 220/361 (60.94%), Query Frame = 3
Query: 87 KPRAAALNRFFGGTLAYEKIPTGCLHRTNRSEPFTNVEVVISGKESLEESLASSVESELMTGDNKVVCYDCGEKKDARMRTCLERLPNLLILHLRRFGFDYSTMETVKLNDRCSFPMVLDVKPYTMKGLDEMEAIQKALQAAAEAPGGDLTIEQ-------------EDAGNYLYNLVGVLVHEGISKQGHYYSYIRDRRRNAYQGGDGKSQVDGASGSSTNSNGS-------------GAGFMEGLG---------RDVSAGASSV-GSEGVGEEKASWFKYDDDKVTRFDPREMETTCFGGVAGTTS---------------------------------------NWQGVSTTVEHER 944
K AAL R FGGT ++KIPTGC HRTNRSEPF N+EV I GKESLEESLAS VESELM GDNKV C DCGEKKDARMRTCLE LPNLLI+HL+RF DY T ETVKLNDRCSFPM+LD+KPYTMKG DE A+++ALQAAAEA GGDLT+EQ EDAG+YLYNL G+LVH G+++ GHYYSYIRDR ++AY+ G G GA + + G AG G + V GA+ V GS+ + +W+K++DD VT FDP+E+E CFGG +TS WQGV+TTVEHER
Sbjct: 2237 KRSVAALERLFGGTWVHQKIPTGCSHRTNRSEPFINLEVNIRGKESLEESLASFVESELMAGDNKVDCEDCGEKKDARMRTCLEHLPNLLIVHLKRFELDYRTFETVKLNDRCSFPMLLDLKPYTMKGTDERRAMEEALQAAAEASGGDLTLEQVTKLHEEQSAKMKEDAGDYLYNLAGILVHAGVAQGGHYYSYIRDRGKSAYEDGAGP----GARARAADDKGRXXXXXXXXVDRKRAAGAERGAXXXXXXXXXXKGVQGGAAGVRGSDSAAGGQGAWYKFEDDDVTPFDPQEIEACCFGGTTLSTSVSNKRYNCLLCTYRGERKVVRCVADVYDEPTRTMYYCHKTWQGVNTTVEHER 2593
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Match: A0A4D9D1L0_9STRA (USP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1L0_9STRA) HSP 1 Score: 208 bits (529), Expect = 8.400e-57 Identity = 123/300 (41.00%), Postives = 158/300 (52.67%), Query Frame = 3
Query: 117 FGGTLAYEKIPTGCLHRTNRSEPFTNVEVVISGKESLEESLASSVESELMTGDNKVVCYDCGEKKDARMRTCLERLPNLLILHLRRFGFDYSTMETVKLNDRCSFPMVLDVKPYTMKGLDEM---EAIQK------------ALQAAAEAPGG---------DLTIEQEDAGNYLYNLVGVLVHEGISKQGHYYSYIRDRRRNAYQGGDGKSQVDGASGSSTNSNGSGAGFMEGLGRDVSAGASSVGSEGVGEEKASWFKYDDDKVTRFDPREMETTCFGGVAGTTSNWQGVSTTVEHER 944
FGG LAY+K+P GC HR R EPF +E++I GKES+EESLA+ VE ELM G+NKV C C KK R CL RLPNLLILHL+RF D++T ETVKLN+RC+FP L++KPYT +GL+E EA+QK LQ E G D+ + ED + Y L GV++H GI++ GHYYS+I+DR R + +W K+DD+ V+ FDP +ET CFGG + W GV+ VE ER
Sbjct: 2365 FGGKLAYQKLPQGCEHRAEREEPFIKIELIIKGKESIEESLATFVEGELMDGENKVECEGCNTKKPTVRRICLGRLPNLLILHLKRFDLDFTTFETVKLNNRCAFPTRLNMKPYTREGLEEASQTEALQKLQVRENGEDMDVGLQEREERTEGMTVPASLVNDVPMVVEDE-EFDYELKGVVIHAGIAQGGHYYSFIKDRER----------------------------------------------------EDTWHKFDDEDVSSFDPSLIETQCFGGTFSKPTTWNGVTNYVEQER 2611
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Match: K8Z0L3_NANGC (Ubiquitin carboxyl-terminal hydrolase 24 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z0L3_NANGC) HSP 1 Score: 207 bits (526), Expect = 1.890e-56 Identity = 123/300 (41.00%), Postives = 157/300 (52.33%), Query Frame = 3
Query: 117 FGGTLAYEKIPTGCLHRTNRSEPFTNVEVVISGKESLEESLASSVESELMTGDNKVVCYDCGEKKDARMRTCLERLPNLLILHLRRFGFDYSTMETVKLNDRCSFPMVLDVKPYTMKGLDEM---EAIQK------------ALQAAAEAPGG---------DLTIEQEDAGNYLYNLVGVLVHEGISKQGHYYSYIRDRRRNAYQGGDGKSQVDGASGSSTNSNGSGAGFMEGLGRDVSAGASSVGSEGVGEEKASWFKYDDDKVTRFDPREMETTCFGGVAGTTSNWQGVSTTVEHER 944
FGG LAY+K+P GC HR R EPF +E++I GKES+EESLA+ VE ELM G+NKV C C KK R CL LPNLLILHL+RF D++T ETVKLN+RC+FP L++KPYT +GL+E EA+QK LQ E G D+ + ED + Y L GV++H GI++ GHYYS+I+DR R + +W K+DD+ VT FDP +ET CFGG + W GV+ VE ER
Sbjct: 688 FGGKLAYQKLPQGCEHRAEREEPFIKIELIIKGKESIEESLAAFVEGELMDGENKVECEGCNTKKPTVRRICLGSLPNLLILHLKRFDLDFTTFETVKLNNRCAFPTRLNMKPYTREGLEEASQTEALQKLQVRENGEDMDVGLQEREERKEGMTEPASLVNDVPMVFEDE-EFDYELKGVVIHAGIAQGGHYYSFIKDRER----------------------------------------------------EDTWHKFDDEDVTSFDPSLIETQCFGGTFSKPTTWNGVTNYVEQER 934
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Match: A0A836CEK4_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEK4_9STRA) HSP 1 Score: 199 bits (507), Expect = 6.880e-54 Identity = 129/286 (45.10%), Postives = 161/286 (56.29%), Query Frame = 3
Query: 96 AAALNRFFGGTLAYEKIPTGCLHRTNRSEPFTNVEVVISGKESLEESLASSVESELMTGDNKVVCYDCGEKKDARMRTCLERLPNLLILHLRRFGFDYSTMETVKLNDRCSFPMVLDVKPYTMKGLDEMEAIQKALQAAAEAPGGDLTIEQEDAGNYLYNLVGVLVHEGISKQGHYYSYIRDRRRNAYQGGDGKSQVDGASGSSTNSNGSGAGFMEGLGRDVSAGASSVG---------SEGVGEEKASWFKYDDDKVTRFDPREMETTCFGG---VAGTTSNWQG 917
A AL FGG L EKIP GC HRT+R +PF +E++I GKES++ESLA+ VE ELM GDNKV C CG KKD+ RT L LPNLLILHL+RF DY+T ETVKLN+RC FP+ LDVKPYT +G++E EA+Q AL A + GGDLT+++ + ++ V G + G + A K GA+ + E G V AG + G G E WFK+DDD V FDP +ET CFGG V G TS W+G
Sbjct: 495 AKALANCFGGRLVQEKIPRGCSHRTSREDPFIALELIIRGKESIQESLAALVEGELMEGDNKVECDKCGTKKDSMRRTSLGALPNLLILHLKRFDLDYTTFETVKLNNRCEFPLTLDVKPYTQEGIEEKEALQLALDKAVSSAGGDLTLDELQTLKHTHSQQ---VMTGPADGGP----VAGATGPASVPSTPKGAAVGATPDAATQAADAEYLYELKGILVHAGVAQGGHYYSFIKERQPRTGREP-KWFKFDDDDVLPFDPANIETCCFGGMGPVQGATS-WRG 771
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Match: A0A7S3XVY6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVY6_HETAK) HSP 1 Score: 180 bits (456), Expect = 2.490e-52 Identity = 85/150 (56.67%), Postives = 108/150 (72.00%), Query Frame = 3
Query: 84 GKPRAAALNRFFGGTLAYEKIPTGCLHRTNRSEPFTNVEVVISGKESLEESLASSVESELMTGDNKVVCYDCGEKKDARMRTCLERLPNLLILHLRRFGFDYSTMETVKLNDRCSFPMVLDVKPYTMKGLDEMEAIQKALQAAAEAPGGD 533
G+P+A R FGG + +KIP GC+HR +R+EPF E++I GKES+EESLA+ VE ELM GDNKV C +CGEKKD RTC LPN L+LHL+RF DY+T ETVKLNDRC+FP L++KPYT +G++ EA + AAA GG+
Sbjct: 44 GQPQAREFQRIFGGRMVAQKIPRGCMHRADRAEPFVRAELIIRGKESIEESLAAYVEGELMEGDNKVECEECGEKKDTMRRTCFGTLPNCLVLHLKRFDLDYTTFETVKLNDRCAFPETLNLKPYTKEGIEAREAAE----AAAREKGGE 189
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Match: A0A225WNK5_9STRA (Ubiquitin-specific protease n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WNK5_9STRA) HSP 1 Score: 191 bits (486), Expect = 4.530e-51 Identity = 119/311 (38.26%), Postives = 147/311 (47.27%), Query Frame = 3
Query: 105 LNRFFGGTLAYEKIPTGCLHRTNRSEPFTNVEVVISGKESLEESLASSVESELMTGDNKVVCYDCGEKKDARMRTCLERLPNLLILHLRRFGFDYSTMETVKLNDRCSFPMVLDVKPYTMKGLDEMEAIQKALQAAAEAPGGDLTIEQEDAG--------------------------------NYLYNLVGVLVHEGISKQGHYYSYIRDRRRNAYQGGDGKSQVDGASGSSTNSNGSGAGFMEGLGRDVSAGASSVGSEGVGEEKASWFKYDDDKVTRFDPREMETTCFGGVAGTTSNWQGVSTTVEHE 941
L GG L +K+P C HR R EPF +E+ I GKES+EESL++ VE ELM GDNKV C C KK A RTC LPNLLILHL+RF DY+T ETVKLN+RCSFPM L +KPYT G++E EA + LQ E D + +D+ NY Y L G+LVH G+++ GHYYS+I D WFKYDD+ VT FDP +ET CFGGV +W G + ++E E
Sbjct: 1756 LQDVLGGRLISQKLPKDCGHRYEREEPFIRLELQIRGKESIEESLSAFVEGELMDGDNKVECELCATKKAAVRRTCFGSLPNLLILHLKRFDLDYTTFETVKLNNRCSFPMRLSMKPYTKAGIEEQEA-RSNLQQEQEETSADEDMASDDSSDSDEFMTDVNGDAPSIPPSFSATPRSSVKSDPNYEYRLKGILVHSGVAQGGHYYSFIYDHL-----------------------------------------------------SEKWFKYDDEDVTPFDPANIETECFGGVQR--RSWHGSNNSMEME 2010
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Match: G4ZD97_PHYSP (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=G4ZD97_PHYSP) HSP 1 Score: 191 bits (484), Expect = 8.380e-51 Identity = 119/308 (38.64%), Postives = 149/308 (48.38%), Query Frame = 3
Query: 105 LNRFFGGTLAYEKIPTGCLHRTNRSEPFTNVEVVISGKESLEESLASSVESELMTGDNKVVCYDCGEKKDARMRTCLERLPNLLILHLRRFGFDYSTMETVKLNDRCSFPMVLDVKPYTMKGLDEMEAIQKALQAAAEAPGGDLTIEQEDAG-----------------------------NYLYNLVGVLVHEGISKQGHYYSYIRDRRRNAYQGGDGKSQVDGASGSSTNSNGSGAGFMEGLGRDVSAGASSVGSEGVGEEKASWFKYDDDKVTRFDPREMETTCFGGVAGTTSNWQGVSTTVEHE 941
L GG L +K+P C HR R EPF +E+ I GKES+EESL++ VE ELM GDNKV C +C KK A RTC LPNLLILHL+RF DY+T ETVKLN+RCSFPM L +KPYT G++E EA + Q E D + +D+ NY Y L G+LVH G+++ GHYYS+I D V E+ WFKYDD+ VT FDP +E CFGGV +W G + ++E E
Sbjct: 1751 LQDVLGGKLISQKLPKDCGHRYEREEPFIRLELQIRGKESIEESLSAFVEGELMDGDNKVECENCATKKAAVRRTCFGSLPNLLILHLKRFDLDYTTFETVKLNNRCSFPMRLSMKPYTKAGIEEQEA-RSTSQQEREDTSADEDMASDDSSDSDEFMADVNRDTPAIRTSSSSSSAQSDPNYEYRLKGILVHSGVAQGGHYYSFIYDH--------------------------------------------------VSEK---WFKYDDEDVTPFDPANIEAECFGGVQR--RSWHGSNNSMEME 2002
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Match: D0MTA4_PHYIT (Ubiquitin-specific protease, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MTA4_PHYIT) HSP 1 Score: 189 bits (479), Expect = 3.890e-50 Identity = 117/307 (38.11%), Postives = 144/307 (46.91%), Query Frame = 3
Query: 105 LNRFFGGTLAYEKIPTGCLHRTNRSEPFTNVEVVISGKESLEESLASSVESELMTGDNKVVCYDCGEKKDARMRTCLERLPNLLILHLRRFGFDYSTMETVKLNDRCSFPMVLDVKPYTMKGLDEMEAIQKALQAAAEAPGGDLTIEQEDAG----------------------------NYLYNLVGVLVHEGISKQGHYYSYIRDRRRNAYQGGDGKSQVDGASGSSTNSNGSGAGFMEGLGRDVSAGASSVGSEGVGEEKASWFKYDDDKVTRFDPREMETTCFGGVAGTTSNWQGVSTTVEHE 941
L GG L +K+P C HR R EPF +E+ I GKES+EESL++ VE ELM GDNKV C C KK A RTC LPNLLILHL+RF DY+T ETVKLN+RCSFPM L +KPYT G++E EA Q E D + +D+ NY Y L G+LVH G+++ GHYYS+I D WFKYDD+ VT FDP +E CFGGV +W G + ++E E
Sbjct: 1739 LQDVMGGKLISQKLPKDCGHRYEREEPFIRLELQIRGKESIEESLSAFVEGELMDGDNKVECELCATKKAAVRRTCFGSLPNLLILHLKRFDLDYTTFETVKLNNRCSFPMRLSMKPYTKAGIEEQEARSNLQQDRGET-SADEDMASDDSSDSDEFMADVNGDTPAIPASSSASTKSDPNYEYRLKGILVHSGVAQGGHYYSFIYDHM-----------------------------------------------------SEKWFKYDDEDVTPFDPANIEAECFGGVQR--RSWHGSNNSMEME 1989
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Match: A0A3R7BNW5_9STRA (USP domain-containing protein n=15 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BNW5_9STRA) HSP 1 Score: 188 bits (477), Expect = 7.130e-50 Identity = 98/182 (53.85%), Postives = 123/182 (67.58%), Query Frame = 3
Query: 99 AALNRFFGGTLAYEKIPTGCLHRTNRSEPFTNVEVVISGKESLEESLASSVESELMTGDNKVVCYDCGEKKDARMRTCLERLPNLLILHLRRFGFDYSTMETVKLNDRCSFPMVLDVKPYTMKGLDEMEAIQKALQAAAEAPGGDLTIEQEDAGNYLYNLVGVLVHEGISKQGHYYSYIRDR 644
A L GG L +K+P GC HR R E F +E+ I GKES++ESLA+ VE ELM GDNKV C CGEKK A RTC LP LL+LHL+RF DY+T ETVKLN+RC+FP+ LD+KPYT +GLDE KA + + GG E +D Y+Y L GVLVH G+++ GHYYS+I+D+
Sbjct: 1655 ACLQSHLGGKLISQKLPKGCGHRFEREEAFIRLELQIRGKESIDESLAAFVEGELMDGDNKVECELCGEKKAAIRRTCFGALPQLLVLHLKRFDLDYATFETVKLNNRCAFPLKLDMKPYTKRGLDE-----KAAEDVDDDIGGMDDDENDD--EYMYELRGVLVHAGVAQGGHYYSFIKDQ 1829 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig9420.1.1 >prot_A-nodosum_M_contig9420.1.1 ID=prot_A-nodosum_M_contig9420.1.1|Name=mRNA_A-nodosum_M_contig9420.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=314bp MEMARGKTEAGEAGGMVLRSESGIGGSGKPRAAALNRFFGGTLAYEKIPTback to top mRNA from alignment at A-nodosum_M_contig9420:768..4066+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig9420.1.1 ID=mRNA_A-nodosum_M_contig9420.1.1|Name=mRNA_A-nodosum_M_contig9420.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3299bp|location=Sequence derived from alignment at A-nodosum_M_contig9420:768..4066+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig9420:768..4066+ >mRNA_A-nodosum_M_contig9420.1.1 ID=mRNA_A-nodosum_M_contig9420.1.1|Name=mRNA_A-nodosum_M_contig9420.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at A-nodosum_M_contig9420:768..4066+ (Ascophyllum nodosum dioecious)back to top |