mRNA_A-nodosum_M_contig9420.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9420.1.1
Unique NamemRNA_A-nodosum_M_contig9420.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Match: D8LIA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA1_ECTSI)

HSP 1 Score: 347 bits (891), Expect = 2.530e-105
Identity = 187/318 (58.81%), Postives = 221/318 (69.50%), Query Frame = 3
Query:   81 SGKPRAAALNRFFGGTLAYEKIPTGCLHRTNRSEPFTNVEVVISGKESLEESLASSVESELMTGDNKVVCYDCGEKKDARMRTCLERLPNLLILHLRRFGFDYSTMETVKLNDRCSFPMVLDVKPYTMKGLDEMEAIQKALQAAAEAPGGDLTIEQ-------------EDAGNYLYNLVGVLVHEGISKQGHYYSYIRDRRRNAYQGGDGKSQVDGASGSSTNSNGSGAGFMEGLG----------------RDVSAGASSV-GSEGVGEEKASWFKYDDDKVTRFDPREMETTCFGGVAGTTSNWQGVSTTVEHER 944
            +GK   AAL R FGGT  ++KIPTGC HRTNRSEPF N+EV I GKESLEESLAS +ESELM GDNKV C DCGEKKDARMRTCLE LPNLLI+HL+RF  DY T ETVKLNDRCSFPM+LD+KPYTMKG DE EA+++ALQAAAEA GGDLT+EQ             EDAG+YLYNL G+LVH G+++ GHYYSYIRDR ++AY+ G G     GA+   T  +    G                      + V  GA+ V GSE     + +W+K++DD VT FDP+E+E  CFGG   +TS WQGV+TTVEHER
Sbjct: 1433 AGKRSVAALERLFGGTWVHQKIPTGCSHRTNRSEPFINLEVNIRGKESLEESLASFLESELMAGDNKVDCEDCGEKKDARMRTCLEHLPNLLIVHLKRFELDYRTFETVKLNDRCSFPMLLDLKPYTMKGTDEREAMEEALQAAAEASGGDLTLEQVTKLHEEQSAKMKEDAGDYLYNLAGILVHAGVAQGGHYYSYIRDRGKSAYEDGAGPGARAGAADDKTRGDAGDGGRKRAXXXXXXXXXXXXXXXXXXKGVEGGAAGVRGSESAAGGQGAWYKFEDDDVTPFDPQEIEACCFGGTTLSTSTWQGVNTTVEHER 1750          
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Match: A0A6H5KKZ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ1_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 4.120e-95
Identity = 187/361 (51.80%), Postives = 220/361 (60.94%), Query Frame = 3
Query:   87 KPRAAALNRFFGGTLAYEKIPTGCLHRTNRSEPFTNVEVVISGKESLEESLASSVESELMTGDNKVVCYDCGEKKDARMRTCLERLPNLLILHLRRFGFDYSTMETVKLNDRCSFPMVLDVKPYTMKGLDEMEAIQKALQAAAEAPGGDLTIEQ-------------EDAGNYLYNLVGVLVHEGISKQGHYYSYIRDRRRNAYQGGDGKSQVDGASGSSTNSNGS-------------GAGFMEGLG---------RDVSAGASSV-GSEGVGEEKASWFKYDDDKVTRFDPREMETTCFGGVAGTTS---------------------------------------NWQGVSTTVEHER 944
            K   AAL R FGGT  ++KIPTGC HRTNRSEPF N+EV I GKESLEESLAS VESELM GDNKV C DCGEKKDARMRTCLE LPNLLI+HL+RF  DY T ETVKLNDRCSFPM+LD+KPYTMKG DE  A+++ALQAAAEA GGDLT+EQ             EDAG+YLYNL G+LVH G+++ GHYYSYIRDR ++AY+ G G     GA   + +  G               AG   G           + V  GA+ V GS+     + +W+K++DD VT FDP+E+E  CFGG   +TS                                        WQGV+TTVEHER
Sbjct: 2237 KRSVAALERLFGGTWVHQKIPTGCSHRTNRSEPFINLEVNIRGKESLEESLASFVESELMAGDNKVDCEDCGEKKDARMRTCLEHLPNLLIVHLKRFELDYRTFETVKLNDRCSFPMLLDLKPYTMKGTDERRAMEEALQAAAEASGGDLTLEQVTKLHEEQSAKMKEDAGDYLYNLAGILVHAGVAQGGHYYSYIRDRGKSAYEDGAGP----GARARAADDKGRXXXXXXXXVDRKRAAGAERGAXXXXXXXXXXKGVQGGAAGVRGSDSAAGGQGAWYKFEDDDVTPFDPQEIEACCFGGTTLSTSVSNKRYNCLLCTYRGERKVVRCVADVYDEPTRTMYYCHKTWQGVNTTVEHER 2593          
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Match: A0A4D9D1L0_9STRA (USP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1L0_9STRA)

HSP 1 Score: 208 bits (529), Expect = 8.400e-57
Identity = 123/300 (41.00%), Postives = 158/300 (52.67%), Query Frame = 3
Query:  117 FGGTLAYEKIPTGCLHRTNRSEPFTNVEVVISGKESLEESLASSVESELMTGDNKVVCYDCGEKKDARMRTCLERLPNLLILHLRRFGFDYSTMETVKLNDRCSFPMVLDVKPYTMKGLDEM---EAIQK------------ALQAAAEAPGG---------DLTIEQEDAGNYLYNLVGVLVHEGISKQGHYYSYIRDRRRNAYQGGDGKSQVDGASGSSTNSNGSGAGFMEGLGRDVSAGASSVGSEGVGEEKASWFKYDDDKVTRFDPREMETTCFGGVAGTTSNWQGVSTTVEHER 944
            FGG LAY+K+P GC HR  R EPF  +E++I GKES+EESLA+ VE ELM G+NKV C  C  KK    R CL RLPNLLILHL+RF  D++T ETVKLN+RC+FP  L++KPYT +GL+E    EA+QK             LQ   E   G         D+ +  ED   + Y L GV++H GI++ GHYYS+I+DR R                                                    + +W K+DD+ V+ FDP  +ET CFGG     + W GV+  VE ER
Sbjct: 2365 FGGKLAYQKLPQGCEHRAEREEPFIKIELIIKGKESIEESLATFVEGELMDGENKVECEGCNTKKPTVRRICLGRLPNLLILHLKRFDLDFTTFETVKLNNRCAFPTRLNMKPYTREGLEEASQTEALQKLQVRENGEDMDVGLQEREERTEGMTVPASLVNDVPMVVEDE-EFDYELKGVVIHAGIAQGGHYYSFIKDRER----------------------------------------------------EDTWHKFDDEDVSSFDPSLIETQCFGGTFSKPTTWNGVTNYVEQER 2611          
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Match: K8Z0L3_NANGC (Ubiquitin carboxyl-terminal hydrolase 24 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z0L3_NANGC)

HSP 1 Score: 207 bits (526), Expect = 1.890e-56
Identity = 123/300 (41.00%), Postives = 157/300 (52.33%), Query Frame = 3
Query:  117 FGGTLAYEKIPTGCLHRTNRSEPFTNVEVVISGKESLEESLASSVESELMTGDNKVVCYDCGEKKDARMRTCLERLPNLLILHLRRFGFDYSTMETVKLNDRCSFPMVLDVKPYTMKGLDEM---EAIQK------------ALQAAAEAPGG---------DLTIEQEDAGNYLYNLVGVLVHEGISKQGHYYSYIRDRRRNAYQGGDGKSQVDGASGSSTNSNGSGAGFMEGLGRDVSAGASSVGSEGVGEEKASWFKYDDDKVTRFDPREMETTCFGGVAGTTSNWQGVSTTVEHER 944
            FGG LAY+K+P GC HR  R EPF  +E++I GKES+EESLA+ VE ELM G+NKV C  C  KK    R CL  LPNLLILHL+RF  D++T ETVKLN+RC+FP  L++KPYT +GL+E    EA+QK             LQ   E   G         D+ +  ED   + Y L GV++H GI++ GHYYS+I+DR R                                                    + +W K+DD+ VT FDP  +ET CFGG     + W GV+  VE ER
Sbjct:  688 FGGKLAYQKLPQGCEHRAEREEPFIKIELIIKGKESIEESLAAFVEGELMDGENKVECEGCNTKKPTVRRICLGSLPNLLILHLKRFDLDFTTFETVKLNNRCAFPTRLNMKPYTREGLEEASQTEALQKLQVRENGEDMDVGLQEREERKEGMTEPASLVNDVPMVFEDE-EFDYELKGVVIHAGIAQGGHYYSFIKDRER----------------------------------------------------EDTWHKFDDEDVTSFDPSLIETQCFGGTFSKPTTWNGVTNYVEQER 934          
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Match: A0A836CEK4_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEK4_9STRA)

HSP 1 Score: 199 bits (507), Expect = 6.880e-54
Identity = 129/286 (45.10%), Postives = 161/286 (56.29%), Query Frame = 3
Query:   96 AAALNRFFGGTLAYEKIPTGCLHRTNRSEPFTNVEVVISGKESLEESLASSVESELMTGDNKVVCYDCGEKKDARMRTCLERLPNLLILHLRRFGFDYSTMETVKLNDRCSFPMVLDVKPYTMKGLDEMEAIQKALQAAAEAPGGDLTIEQEDAGNYLYNLVGVLVHEGISKQGHYYSYIRDRRRNAYQGGDGKSQVDGASGSSTNSNGSGAGFMEGLGRDVSAGASSVG---------SEGVGEEKASWFKYDDDKVTRFDPREMETTCFGG---VAGTTSNWQG 917
            A AL   FGG L  EKIP GC HRT+R +PF  +E++I GKES++ESLA+ VE ELM GDNKV C  CG KKD+  RT L  LPNLLILHL+RF  DY+T ETVKLN+RC FP+ LDVKPYT +G++E EA+Q AL  A  + GGDLT+++     + ++     V  G +  G     +      A      K    GA+  +           E  G  V AG +  G             G E   WFK+DDD V  FDP  +ET CFGG   V G TS W+G
Sbjct:  495 AKALANCFGGRLVQEKIPRGCSHRTSREDPFIALELIIRGKESIQESLAALVEGELMEGDNKVECDKCGTKKDSMRRTSLGALPNLLILHLKRFDLDYTTFETVKLNNRCEFPLTLDVKPYTQEGIEEKEALQLALDKAVSSAGGDLTLDELQTLKHTHSQQ---VMTGPADGGP----VAGATGPASVPSTPKGAAVGATPDAATQAADAEYLYELKGILVHAGVAQGGHYYSFIKERQPRTGREP-KWFKFDDDDVLPFDPANIETCCFGGMGPVQGATS-WRG 771          
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Match: A0A7S3XVY6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVY6_HETAK)

HSP 1 Score: 180 bits (456), Expect = 2.490e-52
Identity = 85/150 (56.67%), Postives = 108/150 (72.00%), Query Frame = 3
Query:   84 GKPRAAALNRFFGGTLAYEKIPTGCLHRTNRSEPFTNVEVVISGKESLEESLASSVESELMTGDNKVVCYDCGEKKDARMRTCLERLPNLLILHLRRFGFDYSTMETVKLNDRCSFPMVLDVKPYTMKGLDEMEAIQKALQAAAEAPGGD 533
            G+P+A    R FGG +  +KIP GC+HR +R+EPF   E++I GKES+EESLA+ VE ELM GDNKV C +CGEKKD   RTC   LPN L+LHL+RF  DY+T ETVKLNDRC+FP  L++KPYT +G++  EA +    AAA   GG+
Sbjct:   44 GQPQAREFQRIFGGRMVAQKIPRGCMHRADRAEPFVRAELIIRGKESIEESLAAYVEGELMEGDNKVECEECGEKKDTMRRTCFGTLPNCLVLHLKRFDLDYTTFETVKLNDRCAFPETLNLKPYTKEGIEAREAAE----AAAREKGGE 189          
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Match: A0A225WNK5_9STRA (Ubiquitin-specific protease n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WNK5_9STRA)

HSP 1 Score: 191 bits (486), Expect = 4.530e-51
Identity = 119/311 (38.26%), Postives = 147/311 (47.27%), Query Frame = 3
Query:  105 LNRFFGGTLAYEKIPTGCLHRTNRSEPFTNVEVVISGKESLEESLASSVESELMTGDNKVVCYDCGEKKDARMRTCLERLPNLLILHLRRFGFDYSTMETVKLNDRCSFPMVLDVKPYTMKGLDEMEAIQKALQAAAEAPGGDLTIEQEDAG--------------------------------NYLYNLVGVLVHEGISKQGHYYSYIRDRRRNAYQGGDGKSQVDGASGSSTNSNGSGAGFMEGLGRDVSAGASSVGSEGVGEEKASWFKYDDDKVTRFDPREMETTCFGGVAGTTSNWQGVSTTVEHE 941
            L    GG L  +K+P  C HR  R EPF  +E+ I GKES+EESL++ VE ELM GDNKV C  C  KK A  RTC   LPNLLILHL+RF  DY+T ETVKLN+RCSFPM L +KPYT  G++E EA +  LQ   E    D  +  +D+                                 NY Y L G+LVH G+++ GHYYS+I D                                                          WFKYDD+ VT FDP  +ET CFGGV     +W G + ++E E
Sbjct: 1756 LQDVLGGRLISQKLPKDCGHRYEREEPFIRLELQIRGKESIEESLSAFVEGELMDGDNKVECELCATKKAAVRRTCFGSLPNLLILHLKRFDLDYTTFETVKLNNRCSFPMRLSMKPYTKAGIEEQEA-RSNLQQEQEETSADEDMASDDSSDSDEFMTDVNGDAPSIPPSFSATPRSSVKSDPNYEYRLKGILVHSGVAQGGHYYSFIYDHL-----------------------------------------------------SEKWFKYDDEDVTPFDPANIETECFGGVQR--RSWHGSNNSMEME 2010          
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Match: G4ZD97_PHYSP (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=G4ZD97_PHYSP)

HSP 1 Score: 191 bits (484), Expect = 8.380e-51
Identity = 119/308 (38.64%), Postives = 149/308 (48.38%), Query Frame = 3
Query:  105 LNRFFGGTLAYEKIPTGCLHRTNRSEPFTNVEVVISGKESLEESLASSVESELMTGDNKVVCYDCGEKKDARMRTCLERLPNLLILHLRRFGFDYSTMETVKLNDRCSFPMVLDVKPYTMKGLDEMEAIQKALQAAAEAPGGDLTIEQEDAG-----------------------------NYLYNLVGVLVHEGISKQGHYYSYIRDRRRNAYQGGDGKSQVDGASGSSTNSNGSGAGFMEGLGRDVSAGASSVGSEGVGEEKASWFKYDDDKVTRFDPREMETTCFGGVAGTTSNWQGVSTTVEHE 941
            L    GG L  +K+P  C HR  R EPF  +E+ I GKES+EESL++ VE ELM GDNKV C +C  KK A  RTC   LPNLLILHL+RF  DY+T ETVKLN+RCSFPM L +KPYT  G++E EA +   Q   E    D  +  +D+                              NY Y L G+LVH G+++ GHYYS+I D                                                   V E+   WFKYDD+ VT FDP  +E  CFGGV     +W G + ++E E
Sbjct: 1751 LQDVLGGKLISQKLPKDCGHRYEREEPFIRLELQIRGKESIEESLSAFVEGELMDGDNKVECENCATKKAAVRRTCFGSLPNLLILHLKRFDLDYTTFETVKLNNRCSFPMRLSMKPYTKAGIEEQEA-RSTSQQEREDTSADEDMASDDSSDSDEFMADVNRDTPAIRTSSSSSSAQSDPNYEYRLKGILVHSGVAQGGHYYSFIYDH--------------------------------------------------VSEK---WFKYDDEDVTPFDPANIEAECFGGVQR--RSWHGSNNSMEME 2002          
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Match: D0MTA4_PHYIT (Ubiquitin-specific protease, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MTA4_PHYIT)

HSP 1 Score: 189 bits (479), Expect = 3.890e-50
Identity = 117/307 (38.11%), Postives = 144/307 (46.91%), Query Frame = 3
Query:  105 LNRFFGGTLAYEKIPTGCLHRTNRSEPFTNVEVVISGKESLEESLASSVESELMTGDNKVVCYDCGEKKDARMRTCLERLPNLLILHLRRFGFDYSTMETVKLNDRCSFPMVLDVKPYTMKGLDEMEAIQKALQAAAEAPGGDLTIEQEDAG----------------------------NYLYNLVGVLVHEGISKQGHYYSYIRDRRRNAYQGGDGKSQVDGASGSSTNSNGSGAGFMEGLGRDVSAGASSVGSEGVGEEKASWFKYDDDKVTRFDPREMETTCFGGVAGTTSNWQGVSTTVEHE 941
            L    GG L  +K+P  C HR  R EPF  +E+ I GKES+EESL++ VE ELM GDNKV C  C  KK A  RTC   LPNLLILHL+RF  DY+T ETVKLN+RCSFPM L +KPYT  G++E EA     Q   E    D  +  +D+                             NY Y L G+LVH G+++ GHYYS+I D                                                          WFKYDD+ VT FDP  +E  CFGGV     +W G + ++E E
Sbjct: 1739 LQDVMGGKLISQKLPKDCGHRYEREEPFIRLELQIRGKESIEESLSAFVEGELMDGDNKVECELCATKKAAVRRTCFGSLPNLLILHLKRFDLDYTTFETVKLNNRCSFPMRLSMKPYTKAGIEEQEARSNLQQDRGET-SADEDMASDDSSDSDEFMADVNGDTPAIPASSSASTKSDPNYEYRLKGILVHSGVAQGGHYYSFIYDHM-----------------------------------------------------SEKWFKYDDEDVTPFDPANIEAECFGGVQR--RSWHGSNNSMEME 1989          
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Match: A0A3R7BNW5_9STRA (USP domain-containing protein n=15 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BNW5_9STRA)

HSP 1 Score: 188 bits (477), Expect = 7.130e-50
Identity = 98/182 (53.85%), Postives = 123/182 (67.58%), Query Frame = 3
Query:   99 AALNRFFGGTLAYEKIPTGCLHRTNRSEPFTNVEVVISGKESLEESLASSVESELMTGDNKVVCYDCGEKKDARMRTCLERLPNLLILHLRRFGFDYSTMETVKLNDRCSFPMVLDVKPYTMKGLDEMEAIQKALQAAAEAPGGDLTIEQEDAGNYLYNLVGVLVHEGISKQGHYYSYIRDR 644
            A L    GG L  +K+P GC HR  R E F  +E+ I GKES++ESLA+ VE ELM GDNKV C  CGEKK A  RTC   LP LL+LHL+RF  DY+T ETVKLN+RC+FP+ LD+KPYT +GLDE     KA +   +  GG    E +D   Y+Y L GVLVH G+++ GHYYS+I+D+
Sbjct: 1655 ACLQSHLGGKLISQKLPKGCGHRFEREEAFIRLELQIRGKESIDESLAAFVEGELMDGDNKVECELCGEKKAAIRRTCFGALPQLLVLHLKRFDLDYATFETVKLNNRCAFPLKLDMKPYTKRGLDE-----KAAEDVDDDIGGMDDDENDD--EYMYELRGVLVHAGVAQGGHYYSFIKDQ 1829          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9420.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIA1_ECTSI2.530e-10558.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKZ1_9PHAE4.120e-9551.80Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A4D9D1L0_9STRA8.400e-5741.00USP domain-containing protein n=2 Tax=Monodopsidac... [more]
K8Z0L3_NANGC1.890e-5641.00Ubiquitin carboxyl-terminal hydrolase 24 (Fragment... [more]
A0A836CEK4_9STRA6.880e-5445.10USP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3XVY6_HETAK2.490e-5256.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A225WNK5_9STRA4.530e-5138.26Ubiquitin-specific protease n=1 Tax=Phytophthora m... [more]
G4ZD97_PHYSP8.380e-5138.64Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
D0MTA4_PHYIT3.890e-5038.11Ubiquitin-specific protease, putative n=2 Tax=Phyt... [more]
A0A3R7BNW5_9STRA7.130e-5053.85USP domain-containing protein n=15 Tax=Aphanomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9420contigA-nodosum_M_contig9420:768..4066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LIA1
PFAMsUCH
Model size946
Max annot lvl2759|Eukaryota
KEGG koko:K11840,ko:K11869
Hectar predicted targeting categoryother localisation
Exons6
Evalue4.15e-106
EggNOG OGsCOG5077@1|root,KOG1866@2759|Eukaryota
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
Cds size942
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9420.1.1prot_A-nodosum_M_contig9420.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9420 770..4066 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870439.1365855-UTR-A-nodosum_M_contig9420:767..7691680870439.1365855-UTR-A-nodosum_M_contig9420:767..769Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9420 768..769 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870439.2254736-CDS-A-nodosum_M_contig9420:769..10481680870439.2254736-CDS-A-nodosum_M_contig9420:769..1048Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9420 770..1048 +
1680870439.2374828-CDS-A-nodosum_M_contig9420:1492..16921680870439.2374828-CDS-A-nodosum_M_contig9420:1492..1692Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9420 1493..1692 +
1680870439.248404-CDS-A-nodosum_M_contig9420:2329..23961680870439.248404-CDS-A-nodosum_M_contig9420:2329..2396Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9420 2330..2396 +
1680870439.2703958-CDS-A-nodosum_M_contig9420:3024..32851680870439.2703958-CDS-A-nodosum_M_contig9420:3024..3285Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9420 3025..3285 +
1680870439.281341-CDS-A-nodosum_M_contig9420:3707..38031680870439.281341-CDS-A-nodosum_M_contig9420:3707..3803Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9420 3708..3803 +
1680870439.2914891-CDS-A-nodosum_M_contig9420:4027..40661680870439.2914891-CDS-A-nodosum_M_contig9420:4027..4066Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9420 4028..4066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9420.1.1

>prot_A-nodosum_M_contig9420.1.1 ID=prot_A-nodosum_M_contig9420.1.1|Name=mRNA_A-nodosum_M_contig9420.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=314bp
MEMARGKTEAGEAGGMVLRSESGIGGSGKPRAAALNRFFGGTLAYEKIPT
GCLHRTNRSEPFTNVEVVISGKESLEESLASSVESELMTGDNKVVCYDCG
EKKDARMRTCLERLPNLLILHLRRFGFDYSTMETVKLNDRCSFPMVLDVK
PYTMKGLDEMEAIQKALQAAAEAPGGDLTIEQEDAGNYLYNLVGVLVHEG
ISKQGHYYSYIRDRRRNAYQGGDGKSQVDGASGSSTNSNGSGAGFMEGLG
RDVSAGASSVGSEGVGEEKASWFKYDDDKVTRFDPREMETTCFGGVAGTT
SNWQGVSTTVEHER
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mRNA from alignment at A-nodosum_M_contig9420:768..4066+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9420.1.1 ID=mRNA_A-nodosum_M_contig9420.1.1|Name=mRNA_A-nodosum_M_contig9420.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3299bp|location=Sequence derived from alignment at A-nodosum_M_contig9420:768..4066+ (Ascophyllum nodosum dioecious)
AGATGGAGATGGCTCGGGGAAAGACCGAGGCTGGGGAAGCTGGCGGGATG GTTCTTAGGTCGGAGAGCGGCATCGGCGGAAGCGGGAAGCCAAGGGCCGC GGCGCTGAATCGATTTTTTGGGGGTACCCTGGCGTACGAGAAGATCCCCA CGGGGTGCCTCCACCGCACGAACAGGTCGGAGCCGTTCACGAACGTAGAG GTTGTGATCTCCGGGAAGGAGTCGTTGGAGGAGAGCCTTGCAAGCTCCGT CGAGTCGGAGCTTATGACTGGCGACAACAAGGTGGGTGAGACAACGAGGG AAAACGAGAGGGTCAGTGGCAGTCGATTCGGTTCGGTTGGATTCGGGTTT GTTAGAATCGGTTCACTTCTTTTCAGTTGGTTTTGAAATGCAATTATTTT TCGGGGGGGGGGGGGAGGATTAGTTTGGCGTAGCTTATTACTTTTCTATC GGTGGAAAGGAGGAAAGGAGGGAAAATGGAGTTAAATTAGTAAATTAGGG GATATCGCTCCGTCGTGGTTCTAGCCTCGCCACATCAAAATGTTGTATGT AACTGCGATTTGTTAGAGGTTTTCCTTCGCGGCGATCCCGATTTCAAGCA GTTTGGTTAGGTGATCATGTGTCGAAGAAAATAATCACGGAAGAGCGTCC CCCCCCATCCCTTGCCCTCCTGCCTCGCGATGCCGCCGCCAAATCCTTGA TCTCCACGCCCACACATGCACGAAGGTGGTTTGTTATGATTGCGGAGAAA AGAAGGACGCGCGGATGAGGACCTGCCTGGAACGCCTCCCAAACCTCTTG ATATTGCACCTGAGGCGTTTCGGGTTCGACTACTCTACAATGGAGACTGT GAAGCTTAACGATCGTTGCTCCTTCCCGATGGTTCTGGACGTGAAGCCGT ACACGATGAAGGGACTCGATGAAATGTGACTTGATGTCGATATGAAACTG CTGCCACTGTAAATGTAGCGCCATCTTTGTGTGTGTGCGGGGGGGGTTAC GCTCTTCGCCGGAGGCGTTTCTATATGCAGCGGTACTCGGTGCGAGTAGG TTAGGACGGATCTTGATAAAACTCACCATTAGAGTTACGCTGTTAATAGT TAATAGTGCTAGGGTAGGGTAGAGTAGAGCTGCCATTGATGCTGCGGTGC TCCTTGAGAAATCGAACACTTGAGAGTAAAAGTGCTGTTTCTCAAGGTCT GTGGGGAACAGCCTATTGATAGCTTTTCTCCCTCAGCATCGTAGAGTACT GTATACAAAATATACAGTAGGCAGTTGGCGTACCGGGAGGGATGCTTCAA AGCCGCCCCGTGTTTGTACAGTAATATGAAAATATTTCCGCAGTACCACA GCAGCATTCACGAGTACAGTAGGGGTTCTTTTTATACGTGTTGATTTGAA TGCAAACTGTTGCTGTAATGTTCTTGCAAATACGTTTGTGCGAGACGTAA AAAAGATAGCCCACATGGCGTAAATGTAAAATTATTAGAGATATGGAGGC GGGGTGGGTTTTGGGAGGGGAAATGTTTCTCTCTAATTTTTTTTCCCCTC TTTGTTTCTCAGGGAGGCCATACAGAAAGCGCTGCAGGCAGCCGCGGAGG CCCCTGGGGGCGATCTAACGATCGAACAGGTAATGAAGCTTCACAGGGAC CAAGTATGTTGGTGTGGGTACGTGCGTGTGTGTATTTATTGATTTATTAA AGTGCACATCACCGCGCAATCTGGCAATTAAAGTGCCCTGCTACGAGTAT TGATCTTAATAGTCATTCTAAGCTACTCGCATTAATTATCTCAATAGGGG ATCAGTTAGATTGCGTGGGTGTAGGTGTGCTCGCGATCTGACGGTCTGAC ATGCAGACTTGAGGCATCTGTCGTGAACGTTTTGTCAGAAGCCAAGGCAG GCATGCAGTCGGTCAGTCAGTCGCTTGCGAGGGATCAGCTGTTATCCTTC TCCGCACGCGGCGTGTTTTTTTCTGTACAAAAACCTAGACAAATCTCATT ACCTTCTTCGAGAGCTAAAAACCGGCCCCCAATCCGCCCTCGTGGTATAA CATTCGTGCATCTTCTCTAGCCATCGACCGGTACATGGAAAGTCATCTAC TTAGCACTGGACCTGAGCAGGGGAAGCCGCACATGTATCCAGGTCCTGTC TAGGAATACCGGTATATCCCTCTGTGTGTATATCTCATGACAACGAAATG ATGACTCCTATGCTGTCATGTCTATGCGTTCCAATATGTAAATCTGCAAC GATGAAGGAGGACGCAGGAAACTACCTGTACAACCTGGTTGGCGTCCTTG TGCACGAAGGGATTTCCAAACAAGGGCATTACTATTCCTACATCCGCGAC AGGAGGAGGAACGCCTACCAAGGTGGAGACGGAAAGTCGCAAGTGGACGG TGCCAGCGGTAGCAGCACTAACAGCAACGGAAGCGGCGCCGGCTTTATGG AAGGCTTAGGACGAGACGTTAGCGCCGGAGCGAGCAGCGTGGGATCTGAG GGAGTTGGAGAGGAAAAGGTGGAGGGCGTGGTTGGAAAGAGAGGGCGACA CTCGATTTTCCTCCCTCCAGTGTTATAGGCAACCTTGCACCGAGAAAAAT GGGGGAGATATGAGGGTAGCTGCTTGGGGAGGAGGGGGTCTGTTTCCCAT CGAGCGTGTGTCGCGTCGCGGCAGACGGACGTCTCATACATGTGTCATAG TTGGCCTTACGTTCAAATCATACGCGTGCCGCCGTAGACGAAGATCCCGA GACGTGGGTATCGCAGTCGGACAGGCTCGTTCGACGTTGGTCGAAGCCAG TCCAATCCAAACCGCTTCTCTTGCTCACTTTTTTGGGCGTACGCTGGCTT AACTCTCTTTTCCCCGTCGGGGGCTCACACTCTCTCTCTCTTATTTTCCT CATGTACGCGTGGTCACAACGCTCGCGCTCCTGACGCCAGGCGTCGTGGT TCAAGTACGACGACGACAAGGTTACACGGTTTGACCCGCGGGAGATGGAG ACAACCTGCTTTGGGGGTGTAGCCGGTACCACCTCGGTAAGCGCGGTCTG TTTGTTGGTGTATTGTGTGCTACCAGTATTTTTTTCAGCCGTCGGTGGAG AATTATTTATGAATCTAGACTATTAATACTGTATCATGTCTTGTCACCCT GTCCATTTATCTTAGCCCCCCCCCCCCTTCCCTTCCCTTCCCTCACCTCT TCTCGTGCGCTTTTGGATGCCGCGCGAATCGCACGTACACATGAATCCCT CGTCCCTCAGAACTGGCAGGGCGTGAGTACCACCGTGGAACACGAGCGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9420:768..4066+

>mRNA_A-nodosum_M_contig9420.1.1 ID=mRNA_A-nodosum_M_contig9420.1.1|Name=mRNA_A-nodosum_M_contig9420.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at A-nodosum_M_contig9420:768..4066+ (Ascophyllum nodosum dioecious)
ATGGAGATGGCTCGGGGAAAGACCGAGGCTGGGGAAGCTGGCGGGATGGT
TCTTAGGTCGGAGAGCGGCATCGGCGGAAGCGGGAAGCCAAGGGCCGCGG
CGCTGAATCGATTTTTTGGGGGTACCCTGGCGTACGAGAAGATCCCCACG
GGGTGCCTCCACCGCACGAACAGGTCGGAGCCGTTCACGAACGTAGAGGT
TGTGATCTCCGGGAAGGAGTCGTTGGAGGAGAGCCTTGCAAGCTCCGTCG
AGTCGGAGCTTATGACTGGCGACAACAAGGTGGTTTGTTATGATTGCGGA
GAAAAGAAGGACGCGCGGATGAGGACCTGCCTGGAACGCCTCCCAAACCT
CTTGATATTGCACCTGAGGCGTTTCGGGTTCGACTACTCTACAATGGAGA
CTGTGAAGCTTAACGATCGTTGCTCCTTCCCGATGGTTCTGGACGTGAAG
CCGTACACGATGAAGGGACTCGATGAAATGGAGGCCATACAGAAAGCGCT
GCAGGCAGCCGCGGAGGCCCCTGGGGGCGATCTAACGATCGAACAGGAGG
ACGCAGGAAACTACCTGTACAACCTGGTTGGCGTCCTTGTGCACGAAGGG
ATTTCCAAACAAGGGCATTACTATTCCTACATCCGCGACAGGAGGAGGAA
CGCCTACCAAGGTGGAGACGGAAAGTCGCAAGTGGACGGTGCCAGCGGTA
GCAGCACTAACAGCAACGGAAGCGGCGCCGGCTTTATGGAAGGCTTAGGA
CGAGACGTTAGCGCCGGAGCGAGCAGCGTGGGATCTGAGGGAGTTGGAGA
GGAAAAGGCGTCGTGGTTCAAGTACGACGACGACAAGGTTACACGGTTTG
ACCCGCGGGAGATGGAGACAACCTGCTTTGGGGGTGTAGCCGGTACCACC
TCGAACTGGCAGGGCGTGAGTACCACCGTGGAACACGAGCGT
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