mRNA_A-nodosum_M_contig942.26.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig942.26.1
Unique NamemRNA_A-nodosum_M_contig942.26.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig942.26.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 3.570e-37
Identity = 78/163 (47.85%), Postives = 102/163 (62.58%), Query Frame = 1
Query:    1 LKAAVVEYFRVHASDKRRLSVREWSVTNEVCSVLDPVAEVNIKVQGAEDTYISQATFLMTELLAIMESGPFRIRTPDKQ-QVDPVPYDDVETSDLCGEVRTAVDVCVEYMGKKNLGEVGNPVELISTLLDPRRKPLSKQECVNGSPDVKQHAINELKDVADLF 486
            LK A+VEYFR + ++ R+LS REW+VTNEVCS+LD VAEV +K+QGA DT+ISQ  F M E+  I     ++IR PD+    D V  + ++  DL  E     +V +  M KK LG    P+E I  LLDPRRK  S +  VNGS D+K  AI ++K VA  F
Sbjct:  135 LKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVKSVAKTF 297          
BLAST of mRNA_A-nodosum_M_contig942.26.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 2.450e-36
Identity = 78/163 (47.85%), Postives = 102/163 (62.58%), Query Frame = 1
Query:    1 LKAAVVEYFRVHASDKRRLSVREWSVTNEVCSVLDPVAEVNIKVQGAEDTYISQATFLMTELLAIMESGPFRIRTPDKQ-QVDPVPYDDVETSDLCGEVRTAVDVCVEYMGKKNLGEVGNPVELISTLLDPRRKPLSKQECVNGSPDVKQHAINELKDVADLF 486
            LK A+VEYFR + ++ R+LS REW+VTNEVCS+LD VAEV +K+QGA DT+ISQ  F M E+  I     ++IR PD+    D V  + ++  DL  E     +V +  M KK LG    P+E I  LLDPRRK  S +  VNGS D+K  AI ++K VA  F
Sbjct:  463 LKKAIVEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVKSVAKTF 625          
BLAST of mRNA_A-nodosum_M_contig942.26.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.320e-29
Identity = 62/167 (37.13%), Postives = 102/167 (61.08%), Query Frame = 1
Query:    1 LKAAVVEYFRVHASDKRRLSVREWSVTNEVCSVLDPVAEVNIKVQGAEDTYISQATFLMTELLAIMESGPFRIRTPDKQQV----DPVPYDDVETSDLCGEVRTAVDVCVEYMGKKNLGEVGNPVELISTLLDPRRKPLSKQECVNGSPDVKQHAINELKDVADLFE 489
            LK  + EYF+ +  ++R+L+  EW++TNEVCS+L  V+EV I++QG+ DT++ QA F++ EL+ ++      IR P+   +    + +P DD +  DL  E +  ++V  E M +K +G     VE +S L+DPRRK L   +  NGS D+++ A ++LK V   F+
Sbjct:  473 LKKPISEYFKKYPQNERKLTPNEWTITNEVCSLLSDVSEVTIRMQGSVDTHVGQAMFILHELIEMLGEDTHPIRQPNATVMPLPPEGIPTDDTQVMDLTAEAQCVLEVLQEKMREKGMGSAQVAVERLSALMDPRRKSLDSDQLENGSADLRKKAEDDLKAVIAKFD 639          
BLAST of mRNA_A-nodosum_M_contig942.26.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 3.320e-28
Identity = 60/167 (35.93%), Postives = 101/167 (60.48%), Query Frame = 1
Query:    1 LKAAVVEYFRVHASDKRRLSVREWSVTNEVCSVLDPVAEVNIKVQGAEDTYISQATFLMTELLAIMESGPFRIRTPDKQQV----DPVPYDDVETSDLCGEVRTAVDVCVEYMGKKNLGEVGNPVELISTLLDPRRKPLSKQECVNGSPDVKQHAINELKDVADLFE 489
            LK  + EYF+ +  ++R+L+  EW++TNEVCS+L  V+EV I++QG+ DT++ QA F++ EL+ ++      IR P+   +    + +P DD +  DL  E +  ++V  E M +K +G     VE +S L+DPR + L   +  NGS D+++ A ++LK V   F+
Sbjct:  278 LKKPISEYFKKYPQNERKLTPNEWTITNEVCSLLSDVSEVTIRMQGSVDTHVGQAMFILHELIEMLGEDTHPIRQPNATVMPLPPEGIPTDDTQVMDLTAEAQCVLEVLQEKMREKGVGSAQVAVERLSALMDPRLRSLDSDQLENGSADLRKKAEDDLKAVIAKFD 444          
BLAST of mRNA_A-nodosum_M_contig942.26.1 vs. uniprot
Match: A0A6H5KZZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZZ1_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 4.520e-28
Identity = 62/179 (34.64%), Postives = 104/179 (58.10%), Query Frame = 1
Query:    1 LKAAVVEYFRVHASDKRRLSVREWSVTNEVCSVLDPVAEVNIKVQGAEDTYISQATFLMTELLAIMESGPFRIRTPDKQQV----DPVPYDDVETSDLCGEVRTAVDVCVEYMGKKNLGEVGNPVELISTLLDPRRKPLSKQECVNGSPDVKQHAINELKDVADLFEGSAP*QTTVPTA 525
            LK  + EYF+ +  ++R+L+  EW++ NEVCS+L  V+EV I++QG+ DT+I QA F++ EL+ ++      IR P+   V    + +P D  + +DL  E +  ++V ++ M +K +G     VE +S L+DP  K L   +  NGS D++  A ++LK V   F+     ++TV  A
Sbjct:   62 LKKPISEYFKKYLQNERKLTPNEWTMINEVCSLLSNVSEVTIRMQGSVDTHIGQAMFIIHELIEMLGEDTHPIRQPNATVVPVPPEGIPTDGTQVTDLTAEAQCVLEVLLDVMREKGVGSAQVAVESLSALMDPSGKLLDSDQLENGSADLRNKAEDDLKAVIAKFDVGPSTESTVAPA 240          
BLAST of mRNA_A-nodosum_M_contig942.26.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.620e-27
Identity = 60/167 (35.93%), Postives = 98/167 (58.68%), Query Frame = 1
Query:    1 LKAAVVEYFRVHASDKRRLSVREWSVTNEVCSVLDPVAEVNIKVQGAEDTYISQATFLMTELLAIMESGPFRIRTPDKQQV----DPVPYDDVETSDLCGEVRTAVDVCVEYMGKKNLGEVGNPVELISTLLDPRRKPLSKQECVNGSPDVKQHAINELKDVADLFE 489
            LK  + E+F+ +  + R+L+  EW++ NEVCS+L  V+E+ I+VQG+ DT+I QA F++ E++ ++      IR P+   V    + +P DD   +DL  E    ++V ++ M KK +G      E +S L+DPRRK L   +  NGS D+ + A ++LK V   F+
Sbjct:  123 LKKPISEFFKKYPQNDRKLTPNEWTIINEVCSLLADVSEITIRVQGSVDTHIGQAMFIIHEVIEMLGEDTHPIRQPNATVVPVPEEGIPTDDTPVTDLTAEAPCVLEVLLDVMRKKGVGSAQVAAERLSALMDPRRKLLGSDQLENGSADLSKKAEDDLKAVIAKFD 289          
BLAST of mRNA_A-nodosum_M_contig942.26.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 3.500e-25
Identity = 57/163 (34.97%), Postives = 98/163 (60.12%), Query Frame = 1
Query:    1 LKAAVVEYFRVHASDKRRLSVREWSVTNEVCSVLDPVAEVNIKVQGAEDTYISQATFLMTELLAIMESGPFRIRTPDKQQVDPVPYDDVETSDLCGEVRTAVDVCVEYMGKKNLGEVGNPVELISTLLDPRRKPLSKQECVNGSPDVKQHAINELKDVADLFE 489
            LK  + EYFR    + R+L+  EW++TNEVCS+L  V+EV I++QGA+DT+ISQA F++ E++ ++      IR  +  + +     +++  +L    +  ++V ++ M +K +G+    VE +S L+DPRRK L   +  NGS  +++ A  +LK V   F+
Sbjct:  471 LKKPITEYFREQPHNSRKLTQPEWTITNEVCSLLSDVSEVTIRMQGAKDTHISQAMFIIHEVMEMLREDSHPIRAQNATEPE-----EMQVLELSSAAQGVLEVLLDVMEEKQVGKAVQQVERLSALMDPRRKSLDGAKLENGSATLRKKAEEDLKAVIAQFD 628          
BLAST of mRNA_A-nodosum_M_contig942.26.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 5.810e-25
Identity = 72/196 (36.73%), Postives = 107/196 (54.59%), Query Frame = 1
Query:    1 LKAAVVEYFRVHASD-------KRRLSVREWSVTNEVCSVLDPVAEVNIKVQGAEDTYISQATFLMTELLAIMESG--PFRIR----TP---------------DKQQVDPVPYDDVETSDLCGEVRTAVDVCVEYMGKKNLGEVGNPVELISTLLDPRRKPLSKQECVNGSPDVKQHAINELKDVADLF-EGSAP 501
            LK  + EYFR  A         KR+L+  EW+VTNEVCS+L+ V+EV I++QGA DT++SQATF++ E++ ++ +   P R+     TP               ++  +D +   + + +DL  E +  V V +E M +K +G+    VE +S LLDPRRK L      NGS D+K  A  +LK     F + SAP
Sbjct:  280 LKKPISEYFRRLAQQNSQNKQLKRKLTAHEWTVTNEVCSLLETVSEVTIRMQGATDTHLSQATFIINEVIDMLTTDYHPIRVESAIVTPPPPAAGIIPTEGEGQNESSLDGISTAETQVTDLTLEAQDVVQVLLEVMDEKGVGKALQWVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEADLKAFIGKFAQESAP 475          
BLAST of mRNA_A-nodosum_M_contig942.26.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 3.800e-24
Identity = 72/199 (36.18%), Postives = 103/199 (51.76%), Query Frame = 1
Query:    1 LKAAVVEYFR------VHASDKRRLSVREWSVTNEVCSVLDPVAEVNIKVQGAEDTYISQATFLMTELLAIM--ESGPFR----IRTPDKQQVDPVPYD--------------DVETSDLCGEVRTAVDVCVEYMGKKNLGEVGNPVELISTLLDPRRKPLSKQECVNGSPDVKQHAINELKDVADLFEGSAP*QTTVP 519
            LK  + EYFR       +   KR+LS  EW VTNEVCS+L  V+E+ I++QGA+DT+ISQA FL+ E++ ++  E+ P R    I TP    +D +P +              D+   DL  E +    V +E M +K +G+    VE +S LLDPRRK L   +  NG  D++  A  +LK     F   +   T  P
Sbjct:  135 LKKPISEYFRRLPQIPSNKQLKRKLSSHEWIVTNEVCSLLGDVSEITIRIQGAQDTHISQAMFLIHEVMEMLKDETHPIRTANAIVTPPPPALDVIPTEEEENQPQKGGVSTEDIHVEDLTTEAQGVRKVLLEVMEEKGVGKALQRVERLSALLDPRRKDLDATQVGNGDEDLRIAAEADLKKFIATFTAESVPPTPAP 333          
BLAST of mRNA_A-nodosum_M_contig942.26.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.770e-23
Identity = 68/175 (38.86%), Postives = 96/175 (54.86%), Query Frame = 1
Query:    1 LKAAVVEYFRVHASD-------KRRLSVREWSVTNEVCSVLDPVAEVNIKVQGAEDTYISQATFLMTELLAIMESGPFRIRTPDKQQVDPVPYDDVETSDLCGEVRTAVDVCVEYMGKKNLGEVGNPVELISTLLDPRRKPLSKQECVNGSPDVKQHAINELKDVADLF-EGSAP 501
            LK  + EYFR  A         KR+L+  EW+VTNEVCS+L+ V+EV I++QGA +T++SQATF++ E     ES            +D +  ++ + + L  E +  V V  E M +K +G+    VE +S LLDPRRK L      NGS D+K  A  +LK     F + SAP
Sbjct:  280 LKKPISEYFRRLAQQNSQNKQLKRKLTAHEWTVTNEVCSLLETVSEVTIRMQGATETHLSQATFIINEGEGQNESS-----------LDGISTEETQVTGLTLEAQDVVQVLREMMDEKGVGKALQRVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEADLKAFTGKFAQESAP 443          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig942.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE3.570e-3747.85Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE2.450e-3647.85Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE1.320e-2937.13Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JTB8_9PHAE3.320e-2835.93Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KZZ1_9PHAE4.520e-2834.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE1.620e-2735.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE3.500e-2534.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU3_9PHAE5.810e-2536.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE3.800e-2436.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE1.770e-2338.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig942contigA-nodosum_M_contig942:129401..129978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size578
Hectar predicted targeting categoryother localisation
Exons1
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870438.9623046-UTR-A-nodosum_M_contig942:129400..1294741680870438.9623046-UTR-A-nodosum_M_contig942:129400..129474Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig942 129401..129474 -
1680870438.9837723-UTR-A-nodosum_M_contig942:129804..1299781680870438.9837723-UTR-A-nodosum_M_contig942:129804..129978Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig942 129805..129978 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870438.9741154-CDS-A-nodosum_M_contig942:129474..1298041680870438.9741154-CDS-A-nodosum_M_contig942:129474..129804Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig942 129475..129804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig942.26.1prot_A-nodosum_M_contig942.26.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig942 129475..129804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig942.26.1

>prot_A-nodosum_M_contig942.26.1 ID=prot_A-nodosum_M_contig942.26.1|Name=mRNA_A-nodosum_M_contig942.26.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=110bp
MTELLAIMESGPFRIRTPDKQQVDPVPYDDVETSDLCGEVRTAVDVCVEY
MGKKNLGEVGNPVELISTLLDPRRKPLSKQECVNGSPDVKQHAINELKDV
ADLFEGSAP*
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mRNA from alignment at A-nodosum_M_contig942:129401..129978-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig942.26.1 ID=mRNA_A-nodosum_M_contig942.26.1|Name=mRNA_A-nodosum_M_contig942.26.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=578bp|location=Sequence derived from alignment at A-nodosum_M_contig942:129401..129978- (Ascophyllum nodosum dioecious)
CTGAAAGCCGCGGTCGTCGAGTACTTCAGGGTGCACGCTTCCGACAAGAG GAGACTGTCCGTTCGTGAGTGGTCGGTCACCAACGAGGTGTGCAGCGTGC TGGACCCCGTGGCGGAGGTCAACATCAAGGTCCAAGGAGCGGAGGACACC TACATCAGTCAGGCGACCTTCCTCATGACGGAACTGCTGGCCATCATGGA GTCGGGGCCGTTTCGCATCCGTACGCCAGACAAACAGCAGGTGGACCCCG TTCCATACGACGACGTGGAGACTTCCGATCTCTGCGGTGAGGTGCGGACA GCGGTGGACGTGTGCGTAGAGTACATGGGCAAGAAGAACCTGGGCGAGGT GGGCAACCCTGTGGAGCTCATCAGTACTCTGCTGGACCCGCGGCGGAAAC CCCTGTCGAAGCAAGAGTGCGTCAACGGCAGCCCCGACGTAAAGCAGCAC GCGATCAACGAACTAAAGGATGTGGCGGATCTGTTTGAGGGCTCGGCGCC GTAACAAACTACTGTCCCTACAGCATCGGCCTCTGCCCCTACCCCTGCCC CTGCGTCAGCACTAGCCCCAGCCCCTGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig942:129401..129978-

>mRNA_A-nodosum_M_contig942.26.1 ID=mRNA_A-nodosum_M_contig942.26.1|Name=mRNA_A-nodosum_M_contig942.26.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at A-nodosum_M_contig942:129401..129978- (Ascophyllum nodosum dioecious)
ATGACGGAACTGCTGGCCATCATGGAGTCGGGGCCGTTTCGCATCCGTAC
GCCAGACAAACAGCAGGTGGACCCCGTTCCATACGACGACGTGGAGACTT
CCGATCTCTGCGGTGAGGTGCGGACAGCGGTGGACGTGTGCGTAGAGTAC
ATGGGCAAGAAGAACCTGGGCGAGGTGGGCAACCCTGTGGAGCTCATCAG
TACTCTGCTGGACCCGCGGCGGAAACCCCTGTCGAAGCAAGAGTGCGTCA
ACGGCAGCCCCGACGTAAAGCAGCACGCGATCAACGAACTAAAGGATGTG
GCGGATCTGTTTGAGGGCTCGGCGCCGTAA
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