mRNA_A-nodosum_M_contig942.20.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig942.20.1
Unique NamemRNA_A-nodosum_M_contig942.20.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig942.20.1 vs. uniprot
Match: A0A6H5JBU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU0_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 8.500e-42
Identity = 147/418 (35.17%), Postives = 190/418 (45.45%), Query Frame = 1 
Query:  352 RAKDS-LKAAALHCIALDGLGDFPADHKLGLFEVAPADDTRAMTPTEAAAMPRISGAQVEFSV--QRQEVGHLDSPSARGVNVTVLLQLSLKGDRTEQGRRPEFAPPGMQDYEANRMSSRSLEAASDAEAPIGVPDREEMGAAVAVAAVASARDRAEVQAAISVLTCWNILAGAEEAGAY-MVHLEVAAVFGSGGDWYTANQDIALTRNSFQEASHSSSLPSWPWATLASKSINDFNEQEATILVGNLEWLLEEDVRDKLDEIAVADVKVYRRVHAEANGVEPFQAGRSESQLLEQQLLLQATLCKRDSSGVGVDSTSEKASASFRTSLTPYAEQRPQARRGAAPGIGSNDSGVPTAKGVSPNQAGGSVNAPSSQSCVVSEMEDGEWWRELDEHEGGRGMAAVNALPRHPDWKPGQWR 1593
            RA +S +KAAA HC+A+D +G FPA+H LGLFE  P    R +  T     PR++ A VEFS   QRQ  G  +S        T++ ++ L+ D T + R       G     + R +               VP  E M    A A  A+A + AE Q AIS L  WN++   E      M+ +EV A FG  GDWYTA++ I LT +      HSS+L S                  AT      +W    DV  KLDE   ADV+VY      +   E  +AG          LLL+ TLCKR S   G  +  E    + + +LTPYAE+ P     A                           +PS  S VVSE+ D EWWR  +E E GRGM AV+ALPR P WKPG W+
Sbjct:   54 RATESDVKAAARHCVAVDEVGRFPANHALGLFETEPG---RLVLGT-----PRVTDASVEFSALPQRQNAGGSNSDETPATG-TIVFKVVLEVDNTGRWRE------GGGGTTSGRRTGEP------------VPTGEGMEMTAAAATAATAENPAEAQMAISALAAWNLMTTRETPAMLPMIRVEVGAAFGYHGDWYTASKTIPLTSDG---TGHSSALLS-----------------SATF-----DWQPAPDVWSKLDEPMAADVRVYGTA---STPTEEQEAGL---------LLLRGTLCKRASGFGGRSTRDETTQGTMKAALTPYAERLPAVAAEAV------------------------AISPSRPSVVVSEIRDEEWWRAREEEESGRGMDAVDALPRLPRWKPGDWK 383
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig942.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JBU0_9PHAE8.500e-4235.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig942contigA-nodosum_M_contig942:33903..36193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1977
Hectar predicted targeting categoryother localisation
Exons2
Cds size1644
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870438.5712082-UTR-A-nodosum_M_contig942:33902..340641680870438.5712082-UTR-A-nodosum_M_contig942:33902..34064Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig942 33903..34064 -
1680870438.616137-UTR-A-nodosum_M_contig942:36022..361931680870438.616137-UTR-A-nodosum_M_contig942:36022..36193Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig942 36023..36193 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870438.586869-CDS-A-nodosum_M_contig942:34064..356001680870438.586869-CDS-A-nodosum_M_contig942:34064..35600Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig942 34065..35600 -
1680870438.6058583-CDS-A-nodosum_M_contig942:35914..360221680870438.6058583-CDS-A-nodosum_M_contig942:35914..36022Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig942 35915..36022 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig942.20.1prot_A-nodosum_M_contig942.20.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig942 34065..36022 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig942.20.1

>prot_A-nodosum_M_contig942.20.1 ID=prot_A-nodosum_M_contig942.20.1|Name=mRNA_A-nodosum_M_contig942.20.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=548bp
MLGRFRCVSDFSIKSETVWSGLLQNFPDAKGKGKGGAANGRPNHETTLEE
TRPAAAAVVDRAKDSLKAAALHCIALDGLGDFPADHKLGLFEVAPADDTR
AMTPTEAAAMPRISGAQVEFSVQRQEVGHLDSPSARGVNVTVLLQLSLKG
DRTEQGRRPEFAPPGMQDYEANRMSSRSLEAASDAEAPIGVPDREEMGAA
VAVAAVASARDRAEVQAAISVLTCWNILAGAEEAGAYMVHLEVAAVFGSG
GDWYTANQDIALTRNSFQEASHSSSLPSWPWATLASKSINDFNEQEATIL
VGNLEWLLEEDVRDKLDEIAVADVKVYRRVHAEANGVEPFQAGRSESQLL
EQQLLLQATLCKRDSSGVGVDSTSEKASASFRTSLTPYAEQRPQARRGAA
PGIGSNDSGVPTAKGVSPNQAGGSVNAPSSQSCVVSEMEDGEWWRELDEH
EGGRGMAAVNALPRHPDWKPGQWRVFQDRTKKQRRHQRMEESARRRGNNI
NSETRDIIQSRTKEKRRGNLGVVGFARRLWRAAGREWGRFRRLLRPK*
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mRNA from alignment at A-nodosum_M_contig942:33903..36193-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig942.20.1 ID=mRNA_A-nodosum_M_contig942.20.1|Name=mRNA_A-nodosum_M_contig942.20.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2291bp|location=Sequence derived from alignment at A-nodosum_M_contig942:33903..36193- (Ascophyllum nodosum dioecious)
GTGCCTGGTACAAGACAATCCCGCAGCGAGTCTCGGGACGGCGTGTGGCC
GCCCCGGTGGTGATCCGTGTAGGATGGAACACCGTCAGACCATGTGCATT
GAAGGCGGCCCCAGGGTTCGTGTTTTCTGAGCTAAAATCTTCCAACGTTG
AAAAGGACAGATAAGCGAAAAATGCTTGGAAGGTTTAGATGCGTTTCAGA
TTTTTCTATAAAGAGCGAAACGGTTTGGAGCGGCCTGTTACAAAACTTCC
CCGACGCCAAAGGCAAAGGGAAAGGCGGGATGAGATTGGATGAGATGTGC
GCAGGCTTTGTGTTGGAAGCTGGGGGAAGAACATGTTAGTTTGAAACGTT
TGGGAGCTGTTTCGCCACCATAGAGCCAAAATACTTTTATTACTGTACAC
AACTCTGTTGTGCACATTTCAGGTATCCGCCCAAGGTCGGATAGTTTGTC
TACCTCTGTAAGTTCCATTTCGCGCACGCACCTTTCCACTTCTGCTCGTA
CCCCGTTAGCTTTATCCACGCAGACCCAATATTTTTCAGTCTATCTAAGA
GATGCGCCCGGCGGATGTCTACCTGATGTCCCGGTGCCCACAGGCGGCTA
ATGGGAGACCAAACCACGAGACAACTCTCGAGGAAACGAGACCTGCTGCT
GCCGCGGTCGTGGACCGTGCGAAGGACAGCCTCAAAGCTGCTGCCCTTCA
CTGCATTGCCCTCGACGGATTAGGAGATTTCCCAGCTGATCACAAGCTCG
GTCTATTCGAGGTAGCCCCTGCAGACGATACTCGGGCAATGACTCCCACA
GAAGCGGCAGCAATGCCCCGAATCTCTGGAGCTCAGGTGGAGTTCTCTGT
GCAAAGACAGGAGGTAGGACATCTCGATTCACCATCGGCGCGAGGGGTCA
ACGTGACGGTGTTGTTGCAACTTTCTCTGAAAGGAGACAGGACGGAGCAA
GGCCGAAGACCAGAATTTGCGCCCCCAGGAATGCAGGATTACGAGGCCAA
TCGCATGAGCTCGAGAAGCTTGGAGGCAGCCTCTGACGCTGAAGCGCCAA
TCGGGGTGCCGGACAGGGAGGAAATGGGAGCGGCGGTGGCGGTGGCAGCA
GTGGCCTCCGCGAGGGATCGCGCGGAAGTACAAGCAGCAATTTCTGTCCT
AACATGTTGGAACATTTTGGCAGGTGCCGAGGAGGCGGGTGCATATATGG
TGCACTTGGAGGTGGCCGCTGTATTTGGAAGTGGCGGAGATTGGTACACA
GCCAACCAAGACATCGCTCTGACAAGGAACAGTTTCCAGGAAGCGTCTCA
TTCCTCCTCGCTGCCGTCATGGCCTTGGGCGACACTGGCAAGCAAAAGCA
TCAACGACTTCAATGAGCAAGAAGCGACGATTCTGGTGGGGAATCTGGAA
TGGCTACTAGAGGAGGATGTTCGCGACAAGCTCGACGAGATCGCGGTAGC
CGACGTGAAAGTATACCGCAGGGTACATGCTGAAGCGAATGGTGTTGAAC
CGTTCCAAGCGGGAAGGTCCGAGTCGCAGCTCCTGGAGCAGCAGCTGCTG
CTTCAAGCGACGCTGTGTAAGCGTGATTCTAGTGGCGTCGGTGTGGACAG
TACGAGTGAGAAAGCATCCGCCAGCTTTCGAACGTCGTTGACGCCATACG
CCGAGCAACGACCACAAGCCCGTCGCGGCGCCGCACCAGGAATTGGGAGC
AATGATAGCGGCGTACCAACTGCCAAAGGGGTCTCCCCCAATCAGGCAGG
AGGATCGGTAAACGCTCCGTCCTCTCAAAGTTGCGTTGTATCTGAAATGG
AAGATGGAGAGTGGTGGAGAGAGCTGGACGAGCACGAGGGCGGCCGGGGT
ATGGCTGCAGTCAACGCCCTCCCCCGACACCCTGATTGGAAACCTGGCCA
ATGGCGGGTATTTCAAGACCGTACGAAGAAACAGCGCCGACATCAAAGAA
TGGAGGAAAGCGCTCGTCGAAGAGGAAATAATATTAATAGTGAAACACGT
GATATAATTCAAAGCCGCACAAAGGAGAAACGCAGAGGTAACCTAGGAGT
TGTAGGTTTTGCAAGGCGACTTTGGCGAGCGGCAGGTAGAGAGTGGGGAA
GATTCCGGCGGCTGTTGCGTCCGAAATAAAATTGGTCGTGAATTCTCCAT
TTCACTGCTACTGTTCATAGACCTGCGAAGCATCAGTTCGAGGTACCCCT
GCCTGGGGGATGCTCAGAAGGTTTAGATGCGTTCAGAATTTTCTCAACAC
GTCGTGGATCAAGCACTGCTACATATATTACTCTTTTCTAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig942:33903..36193-

>mRNA_A-nodosum_M_contig942.20.1 ID=mRNA_A-nodosum_M_contig942.20.1|Name=mRNA_A-nodosum_M_contig942.20.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1644bp|location=Sequence derived from alignment at A-nodosum_M_contig942:33903..36193- (Ascophyllum nodosum dioecious)
ATGCTTGGAAGGTTTAGATGCGTTTCAGATTTTTCTATAAAGAGCGAAAC
GGTTTGGAGCGGCCTGTTACAAAACTTCCCCGACGCCAAAGGCAAAGGGA
AAGGCGGGGCGGCTAATGGGAGACCAAACCACGAGACAACTCTCGAGGAA
ACGAGACCTGCTGCTGCCGCGGTCGTGGACCGTGCGAAGGACAGCCTCAA
AGCTGCTGCCCTTCACTGCATTGCCCTCGACGGATTAGGAGATTTCCCAG
CTGATCACAAGCTCGGTCTATTCGAGGTAGCCCCTGCAGACGATACTCGG
GCAATGACTCCCACAGAAGCGGCAGCAATGCCCCGAATCTCTGGAGCTCA
GGTGGAGTTCTCTGTGCAAAGACAGGAGGTAGGACATCTCGATTCACCAT
CGGCGCGAGGGGTCAACGTGACGGTGTTGTTGCAACTTTCTCTGAAAGGA
GACAGGACGGAGCAAGGCCGAAGACCAGAATTTGCGCCCCCAGGAATGCA
GGATTACGAGGCCAATCGCATGAGCTCGAGAAGCTTGGAGGCAGCCTCTG
ACGCTGAAGCGCCAATCGGGGTGCCGGACAGGGAGGAAATGGGAGCGGCG
GTGGCGGTGGCAGCAGTGGCCTCCGCGAGGGATCGCGCGGAAGTACAAGC
AGCAATTTCTGTCCTAACATGTTGGAACATTTTGGCAGGTGCCGAGGAGG
CGGGTGCATATATGGTGCACTTGGAGGTGGCCGCTGTATTTGGAAGTGGC
GGAGATTGGTACACAGCCAACCAAGACATCGCTCTGACAAGGAACAGTTT
CCAGGAAGCGTCTCATTCCTCCTCGCTGCCGTCATGGCCTTGGGCGACAC
TGGCAAGCAAAAGCATCAACGACTTCAATGAGCAAGAAGCGACGATTCTG
GTGGGGAATCTGGAATGGCTACTAGAGGAGGATGTTCGCGACAAGCTCGA
CGAGATCGCGGTAGCCGACGTGAAAGTATACCGCAGGGTACATGCTGAAG
CGAATGGTGTTGAACCGTTCCAAGCGGGAAGGTCCGAGTCGCAGCTCCTG
GAGCAGCAGCTGCTGCTTCAAGCGACGCTGTGTAAGCGTGATTCTAGTGG
CGTCGGTGTGGACAGTACGAGTGAGAAAGCATCCGCCAGCTTTCGAACGT
CGTTGACGCCATACGCCGAGCAACGACCACAAGCCCGTCGCGGCGCCGCA
CCAGGAATTGGGAGCAATGATAGCGGCGTACCAACTGCCAAAGGGGTCTC
CCCCAATCAGGCAGGAGGATCGGTAAACGCTCCGTCCTCTCAAAGTTGCG
TTGTATCTGAAATGGAAGATGGAGAGTGGTGGAGAGAGCTGGACGAGCAC
GAGGGCGGCCGGGGTATGGCTGCAGTCAACGCCCTCCCCCGACACCCTGA
TTGGAAACCTGGCCAATGGCGGGTATTTCAAGACCGTACGAAGAAACAGC
GCCGACATCAAAGAATGGAGGAAAGCGCTCGTCGAAGAGGAAATAATATT
AATAGTGAAACACGTGATATAATTCAAAGCCGCACAAAGGAGAAACGCAG
AGGTAACCTAGGAGTTGTAGGTTTTGCAAGGCGACTTTGGCGAGCGGCAG
GTAGAGAGTGGGGAAGATTCCGGCGGCTGTTGCGTCCGAAATAA
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