mRNA_A-nodosum_M_contig94.65.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig94.65.1
Unique NamemRNA_A-nodosum_M_contig94.65.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig94.65.1 vs. uniprot
Match: A0A7V2AJT8_9PROT (Dihydrofolate reductase n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A7V2AJT8_9PROT)

HSP 1 Score: 85.5 bits (210), Expect = 9.010e-19
Identity = 43/97 (44.33%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    1 GRPISGRLNVVLSSNPSFSPRGAYSATSLRAALDLTRRLPGGVVWIAGGRQLYEEAMPLAQRLYLTLVKKRVAGDVKFP----ATWRRHFRRQISAE 279
            GRP+ GR+N+V++ +P++   GAY   SL  ALD  R L  G + I GG ++Y +AMPLA R+YLT VK R  GD        A WR+ + RQ+  E
Sbjct:   52 GRPLPGRINIVITRDPTYRAEGAYVVHSLDQALDQARNLGDGEIMIIGGAEIYRQAMPLADRIYLTEVKLRPKGDAYLDGFDRAAWRQIWTRQVPVE 148          
BLAST of mRNA_A-nodosum_M_contig94.65.1 vs. uniprot
Match: A0A059X4H4_9BACT (Dihydrofolate reductase n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A059X4H4_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 1.050e-16
Identity = 48/99 (48.48%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    1 GRPISGRLNVVLSSNPSFSP-RGAYSATSLRAALDLTRRLPGGVVWIAGGRQLYEEAMPLAQRLYLTLVKKRVAGDVKF---PATWRRHFRRQISAEDH 285
            GR + GRLNVV+SSNP+F P  G+   +SL+AALDL+       V+I GG+Q++ EAMPLA RLYLT +   V GD  F   P  WR      +S+E H
Sbjct:   52 GRTLPGRLNVVISSNPNFKPFEGSVLVSSLQAALDLSEVKSAEEVFIIGGQQVFTEAMPLADRLYLTKIHTTVDGDKFFEYDPNDWRL-----VSSEFH 145          
BLAST of mRNA_A-nodosum_M_contig94.65.1 vs. uniprot
Match: A0A3M1WQH3_9GAMM (Dihydrofolate reductase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M1WQH3_9GAMM)

HSP 1 Score: 79.7 bits (195), Expect = 1.520e-16
Identity = 45/108 (41.67%), Postives = 60/108 (55.56%), Query Frame = 1
Query:    1 GRPISGRLNVVLSSNPSFSPRGAYSATSLRAALDLTRRLPGGVVWIAGGRQLYEEAMPLAQRLYLTLVKKRVAGDVKFPATWRRHFR---RQISAEDHSCCTFLTFST 315
            GRP+ GRLN+V+SS P  +  G     SL AAL+  R+     + I GG ++YE+A+PLA RLYLTL+  R  GD +FP    R ++   R     D      LTF T
Sbjct:   56 GRPLPGRLNIVVSSQPDLAIEGCEVVDSLEAALERARQEDPEEIMIIGGARIYEQALPLADRLYLTLIDSRPEGDARFPEWSSRDWKVVQRDFMLPDADNPWSLTFLT 163          
BLAST of mRNA_A-nodosum_M_contig94.65.1 vs. uniprot
Match: A0A238D7Z0_THIDL (Dihydrofolate reductase n=4 Tax=root TaxID=1 RepID=A0A238D7Z0_THIDL)

HSP 1 Score: 79.0 bits (193), Expect = 3.690e-16
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    1 GRPISGRLNVVLSSNPSFSPRGAYSATSLRAALDLTRRLPGGVVWIAGGRQLYEEAMPLAQRLYLTLVKKRVAGDVKFPATWRRHFRRQISAEDH 285
            GRP+ GR N+V+S +P +  RGA SA SL+ AL L   +P   V++ GG Q+Y EA+PLAQ+L+LT +     GD +FPA W R    + S + H
Sbjct:   64 GRPLPGRRNIVISRDPGYVARGAESAGSLQEALALCTDVPE--VFVVGGAQIYAEALPLAQQLWLTEIHAEPQGDARFPA-WNRADFIEASRDPH 155          
BLAST of mRNA_A-nodosum_M_contig94.65.1 vs. uniprot
Match: A0A327WSM3_9BACT (Dihydrofolate reductase n=1 Tax=Larkinella arboricola TaxID=643671 RepID=A0A327WSM3_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 1.250e-15
Identity = 37/104 (35.58%), Postives = 56/104 (53.85%), Query Frame = 1
Query:    1 GRPISGRLNVVLSSNPSFSPRGAYSATSLRAALDLTRRLPGGVVWIAGGRQLYEEAMPLAQRLYLTLVKKRVAGDVKFP----ATWRRHFRRQISAEDHSCCTF 300
            G+P+  RLN+V++ NP + P G  +  SL  AL   R+     +++ GG ++Y +A+P+  RLYLT VK    GD +FP    A W+   R    A+D     F
Sbjct:   52 GKPLPNRLNIVITRNPDYQPDGVVAVDSLEKALSEARKTAVTEIFVIGGAEIYRQALPIVDRLYLTEVKAAFEGDTRFPEFDKAEWQEISRHHHPADDRHAVAF 155          
BLAST of mRNA_A-nodosum_M_contig94.65.1 vs. uniprot
Match: UPI001645F710 (dihydrofolate reductase n=1 Tax=Bosea sp. CS1GBMeth4 TaxID=1892849 RepID=UPI001645F710)

HSP 1 Score: 77.4 bits (189), Expect = 1.310e-15
Identity = 47/112 (41.96%), Postives = 62/112 (55.36%), Query Frame = 1
Query:    1 GRPISGRLNVVLSSNPSFSPRGAYSATSLRAAL----DLTRRLPGGVVWIAGGRQLYEEAMPLAQRLYLTLVKKRVAGDVKFPATWRRHFRRQ------ISAEDHSCCTFLT 306
            G+P+ GR  VVLS +P F P G + A +L  AL    +L R +    V +AGG ++Y +A+PLA RL LTLV  R  GD  FPA  R  FR          AED   C+F++
Sbjct:   55 GKPLPGRQTVVLSRDPGFRPAGVHVAPTLDQALARAQELGRTMGAHAVIVAGGGEVYAQALPLADRLELTLVHARPEGDALFPAFDRAAFREAGRSEHPAGAEDDHPCSFVS 166          
BLAST of mRNA_A-nodosum_M_contig94.65.1 vs. uniprot
Match: A0A2E5A061_9BACT (Dihydrofolate reductase n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A2E5A061_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 2.700e-15
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    1 GRPISGRLNVVLSSNPSFSPRGAYSATSLRAALDLTRRLPGGVVWIAGGRQLYEEAMPLAQRLYLTLVKKRVAGDVKFPATWRRHFRRQISAED 282
            G+ +  R  + LS +P+     A  A SL+ AL + R    G VWI GG+ +YEEAMPLA++LYLTL+     GDV FP  W +HF R++S  +
Sbjct:   51 GKHLKERRVIALSRDPNLCFADARKAGSLKEALQMARA-DDGDVWICGGQTIYEEAMPLAEQLYLTLIDADFEGDVFFPP-WEKHFPRELSRRE 142          
BLAST of mRNA_A-nodosum_M_contig94.65.1 vs. uniprot
Match: A0A4R2KRG7_9GAMM (Dihydrofolate reductase n=1 Tax=Chromatocurvus halotolerans TaxID=1132028 RepID=A0A4R2KRG7_9GAMM)

HSP 1 Score: 76.3 bits (186), Expect = 3.080e-15
Identity = 44/99 (44.44%), Postives = 57/99 (57.58%), Query Frame = 1
Query:    1 GRPISGRLNVVLSSNPSFSPRGAYSATSLRAALDLT----RRLPGGVVWIAGGRQLYEEAMPLAQRLYLTLVKKRVAGDVKFPATWRRHFRRQISAEDH 285
            GRP+ GR N+V+S NP+F+  G + A  +  A  L     R    G + + GG QLY EA+PL QR+YLT V   VAGD   PA     +R +IS EDH
Sbjct:   48 GRPLPGRDNIVVSRNPAFAAAGVHVAPGIDEAFTLAVASARASGAGELMLLGGAQLYVEALPLIQRIYLTRVHADVAGDAYLPALAAEDWR-EISREDH 145          
BLAST of mRNA_A-nodosum_M_contig94.65.1 vs. uniprot
Match: A0A4P6WF51_9GAMM (Dihydrofolate reductase n=1 Tax=Marinobacter sp. JH2 TaxID=2547598 RepID=A0A4P6WF51_9GAMM)

HSP 1 Score: 76.3 bits (186), Expect = 3.670e-15
Identity = 46/105 (43.81%), Postives = 60/105 (57.14%), Query Frame = 1
Query:    1 GRPISGRLNVVLSSNPSF-SPRGAYSATSLRAAL---DLTRRLPGGV-VWIAGGRQLYEEAMPLAQRLYLTLVKKRVAGDVKFPAT----WRRHFRRQISAEDHS 288
            GRP+ GR+N+V+S NP + +P G  SATSL AAL   +    L GG  V I GG Q+Y EA+P+  R+Y+T V   V GD  FP      W    R   SA D++
Sbjct:   52 GRPLPGRMNLVISRNPEWKAPAGTVSATSLDAALVKAEAQAELDGGEEVMIIGGGQIYAEALPMVDRIYITQVHAEVDGDAYFPEVNWDEWEEIGREDFSASDNN 156          
BLAST of mRNA_A-nodosum_M_contig94.65.1 vs. uniprot
Match: A0A7C3NH78_9CHLR (Dihydrofolate reductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C3NH78_9CHLR)

HSP 1 Score: 76.3 bits (186), Expect = 3.830e-15
Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = 1
Query:    1 GRPISGRLNVVLSSNPSFSPRGAYSATSLRAALDLTRRLPGGVVWIAGGRQLYEEAMPLAQRLYLTLVKKRVAGDVKFP----ATWRRHFRRQISA 276
            G+P+ GR+++V+S +P   P GA+ A SL AALD  R+     V+I GG ++Y +AM LAQRLYLT+V+     DV FP    A W    R  I A
Sbjct:   52 GKPLPGRISIVVSRSPKALPPGAFWAPSLPAALDAARQAGESEVFIIGGGEIYAQAMALAQRLYLTIVQATFQCDVWFPHFSEADWVEVHREAIPA 147          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig94.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V2AJT8_9PROT9.010e-1944.33Dihydrofolate reductase n=1 Tax=Rhodospirillales b... [more]
A0A059X4H4_9BACT1.050e-1648.48Dihydrofolate reductase n=1 Tax=uncultured bacteri... [more]
A0A3M1WQH3_9GAMM1.520e-1641.67Dihydrofolate reductase n=1 Tax=Gammaproteobacteri... [more]
A0A238D7Z0_THIDL3.690e-1645.26Dihydrofolate reductase n=4 Tax=root TaxID=1 RepID... [more]
A0A327WSM3_9BACT1.250e-1535.58Dihydrofolate reductase n=1 Tax=Larkinella arboric... [more]
UPI001645F7101.310e-1541.96dihydrofolate reductase n=1 Tax=Bosea sp. CS1GBMet... [more]
A0A2E5A061_9BACT2.700e-1543.62Dihydrofolate reductase n=1 Tax=Opitutae bacterium... [more]
A0A4R2KRG7_9GAMM3.080e-1544.44Dihydrofolate reductase n=1 Tax=Chromatocurvus hal... [more]
A0A4P6WF51_9GAMM3.670e-1543.81Dihydrofolate reductase n=1 Tax=Marinobacter sp. J... [more]
A0A7C3NH78_9CHLR3.830e-1544.79Dihydrofolate reductase n=1 Tax=Chloroflexi bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig94contigA-nodosum_M_contig94:596154..596474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1158292.JPOE01000002_gene1827
Preferred namefolA
PFAMsDHFR_1
Model size321
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00109,RC00110,RC00158
KEGG koko:K00287
KEGG ReactionR00936,R00937,R00939,R00940,R02235,R02236,R11765
KEGG Pathwayko00670,ko00790,ko01100,ko01523,map00670,map00790,map01100,map01523
KEGG ModuleM00126,M00840
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.21e-16
EggNOG OGsCOG0262@1|root,COG0262@2|Bacteria,1RH0P@1224|Proteobacteria,2VSH8@28216|Betaproteobacteria,1KM46@119065|unclassified Burkholderiales
EC1.5.1.3
DescriptionKey enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
Cds size321
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870433.0970397-CDS-A-nodosum_M_contig94:596153..5964741680870433.0970397-CDS-A-nodosum_M_contig94:596153..596474Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig94 596154..596474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig94.65.1prot_A-nodosum_M_contig94.65.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig94 596154..596474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig94.65.1

>prot_A-nodosum_M_contig94.65.1 ID=prot_A-nodosum_M_contig94.65.1|Name=mRNA_A-nodosum_M_contig94.65.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=107bp
GRPISGRLNVVLSSNPSFSPRGAYSATSLRAALDLTRRLPGGVVWIAGGR
QLYEEAMPLAQRLYLTLVKKRVAGDVKFPATWRRHFRRQISAEDHSCCTF
LTFSTH*
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mRNA from alignment at A-nodosum_M_contig94:596154..596474-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig94.65.1 ID=mRNA_A-nodosum_M_contig94.65.1|Name=mRNA_A-nodosum_M_contig94.65.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at A-nodosum_M_contig94:596154..596474- (Ascophyllum nodosum dioecious)
GGGCGGCCAATCTCTGGACGATTAAATGTTGTGCTTTCGAGCAATCCGAG TTTCTCCCCCAGAGGTGCGTACAGCGCAACGTCACTGAGAGCGGCCCTTG ATTTGACAAGACGTTTACCAGGTGGTGTGGTGTGGATTGCAGGTGGAAGA CAACTTTACGAAGAAGCCATGCCGCTTGCTCAGCGCTTGTATCTAACCCT CGTGAAGAAGCGAGTTGCAGGTGACGTAAAGTTTCCGGCGACGTGGCGAC GCCACTTCCGGCGACAGATCAGTGCGGAAGACCACTCCTGCTGTACCTTC TTGACGTTTTCGACGCACTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig94:596154..596474-

>mRNA_A-nodosum_M_contig94.65.1 ID=mRNA_A-nodosum_M_contig94.65.1|Name=mRNA_A-nodosum_M_contig94.65.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=321bp|location=Sequence derived from alignment at A-nodosum_M_contig94:596154..596474- (Ascophyllum nodosum dioecious)
GGGCGGCCAATCTCTGGACGATTAAATGTTGTGCTTTCGAGCAATCCGAG
TTTCTCCCCCAGAGGTGCGTACAGCGCAACGTCACTGAGAGCGGCCCTTG
ATTTGACAAGACGTTTACCAGGTGGTGTGGTGTGGATTGCAGGTGGAAGA
CAACTTTACGAAGAAGCCATGCCGCTTGCTCAGCGCTTGTATCTAACCCT
CGTGAAGAAGCGAGTTGCAGGTGACGTAAAGTTTCCGGCGACGTGGCGAC
GCCACTTCCGGCGACAGATCAGTGCGGAAGACCACTCCTGCTGTACCTTC
TTGACGTTTTCGACGCACTAA
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