mRNA_A-nodosum_M_contig94.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig94.4.1
Unique NamemRNA_A-nodosum_M_contig94.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig94.4.1 vs. uniprot
Match: A0A6H5KEB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB3_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 1.850e-5
Identity = 21/29 (72.41%), Postives = 27/29 (93.10%), Query Frame = 1 
Query:    1 MGQEGGNFLAVGTNHSDIQLWDASRLKQV 87
            MG++GG+FL VGTNHS +QLWDAS+L+QV
Sbjct:  173 MGRDGGDFLGVGTNHSAVQLWDASKLRQV 201
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BLAST of mRNA_A-nodosum_M_contig94.4.1 vs. uniprot
Match: D7G9G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G0_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 1.860e-5
Identity = 21/29 (72.41%), Postives = 27/29 (93.10%), Query Frame = 1 
Query:    1 MGQEGGNFLAVGTNHSDIQLWDASRLKQV 87
            MG++GG+FL VGTNHS +QLWDAS+L+QV
Sbjct:  317 MGRDGGDFLGVGTNHSAVQLWDASKLRQV 345
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig94.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KEB3_9PHAE1.850e-572.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9G0_ECTSI1.860e-572.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig94contigA-nodosum_M_contig94:23309..23574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G9G0
Preferred nameCDC20
PFAMsANAPC4_WD40,WD40
Model size266
Max annot lvl2759|Eukaryota
KEGG koko:K02084,ko:K03363,ko:K06709
KEGG Pathwayko01524,ko04110,ko04111,ko04113,ko04114,ko04115,ko04120,ko04210,ko04214,ko04215,ko05010,ko05012,ko05014,ko05016,ko05134,ko05152,ko05161,ko05166,ko05200,ko05203,ko05222,map01524,map04110,map04111,map04113,map04114,map04115,map04120,map04210,map04214,map04215,map05010,map05012,map05014,map05016,map05134,map05152,map05161,map05166,map05200,map05203,map05222
KEGG ModuleM00389,M00685
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000070,GO:0000151,GO:0000152,GO:0000226,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000819,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007062,GO:0007064,GO:0007088,GO:0007096,GO:0007127,GO:0007135,GO:0007143,GO:0007144,GO:0007147,GO:0007275,GO:0007276,GO:0007292,GO:0007346,GO:0007399,GO:0008022,GO:0008150,GO:0008152,GO:0008284,GO:0009056,GO:0009057,GO:0009893,GO:0009987,GO:0010498,GO:0010564,GO:0010604,GO:0010646,GO:0010720,GO:0010939,GO:0010941,GO:0010975,GO:0015630,GO:0016043,GO:0016567,GO:0016579,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0019827,GO:0019899,GO:0019941,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0030154,GO:0030162,GO:0030163,GO:0030718,GO:0031145,GO:0031323,GO:0031325,GO:0031344,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031461,GO:0031915,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0036211,GO:0040020,GO:0042127,GO:0042826,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043900,GO:0043902,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045595,GO:0045597,GO:0045664,GO:0045787,GO:0048167,GO:0048285,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050773,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050803,GO:0050804,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051225,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051276,GO:0051321,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051445,GO:0051446,GO:0051603,GO:0051704,GO:0051726,GO:0051783,GO:0051960,GO:0051962,GO:0060255,GO:0060281,GO:0060282,GO:0060284,GO:0060547,GO:0060548,GO:0061630,GO:0061659,GO:0061982,GO:0061983,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0070925,GO:0071704,GO:0071840,GO:0080090,GO:0090068,GO:0090128,GO:0090129,GO:0090307,GO:0097150,GO:0098687,GO:0098727,GO:0098813,GO:0099177,GO:0120035,GO:0140013,GO:0140014,GO:0140096,GO:1900193,GO:1900195,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901990,GO:1902494,GO:1902850,GO:1903046,GO:1903047,GO:1903320,GO:1903322,GO:1903429,GO:1903431,GO:1903538,GO:1904146,GO:1904666,GO:1904668,GO:1905879,GO:1905881,GO:1990234,GO:2000026,GO:2000241,GO:2000243
Exons1
Evalue4.57e-07
EggNOG OGsCOG2319@1|root,KOG0305@2759|Eukaryota
DescriptionCell division cycle
Cds size126
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870426.9966173-UTR-A-nodosum_M_contig94:23308..234481680870426.9966173-UTR-A-nodosum_M_contig94:23308..23448Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig94 23309..23448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870427.011527-CDS-A-nodosum_M_contig94:23448..235741680870427.011527-CDS-A-nodosum_M_contig94:23448..23574Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig94 23449..23574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig94.4.1prot_A-nodosum_M_contig94.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig94 23449..23574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig94.4.1

>prot_A-nodosum_M_contig94.4.1 ID=prot_A-nodosum_M_contig94.4.1|Name=mRNA_A-nodosum_M_contig94.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=42bp
MGQEGGNFLAVGTNHSDIQLWDASRLKQVGRALMRRLISII*
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mRNA from alignment at A-nodosum_M_contig94:23309..23574-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig94.4.1 ID=mRNA_A-nodosum_M_contig94.4.1|Name=mRNA_A-nodosum_M_contig94.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=266bp|location=Sequence derived from alignment at A-nodosum_M_contig94:23309..23574- (Ascophyllum nodosum dioecious)
ATGGGTCAAGAAGGAGGTAACTTCCTGGCCGTTGGTACCAACCACAGCGA
CATCCAGCTTTGGGATGCGTCCAGGCTCAAGCAGGTGGGTCGTGCGTTAA
TGAGACGTTTAATATCGATTATTTAGTTGTGATGTCTCTTTCGGAGACCC
TGTTTATTTTAGTTGGAGAGTCAGACTGATTTGGGTGGAAATTCGGCAAG
GTCCTAGTGGAGCATGAAGTCAAAATAATTAGGATACTCTGAATAATACG
GTAACAATTAGGATAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig94:23309..23574-

>mRNA_A-nodosum_M_contig94.4.1 ID=mRNA_A-nodosum_M_contig94.4.1|Name=mRNA_A-nodosum_M_contig94.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=126bp|location=Sequence derived from alignment at A-nodosum_M_contig94:23309..23574- (Ascophyllum nodosum dioecious)
ATGGGTCAAGAAGGAGGTAACTTCCTGGCCGTTGGTACCAACCACAGCGA
CATCCAGCTTTGGGATGCGTCCAGGCTCAAGCAGGTGGGTCGTGCGTTAA
TGAGACGTTTAATATCGATTATTTAG
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