mRNA_A-nodosum_M_contig9398.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9398.1.1
Unique NamemRNA_A-nodosum_M_contig9398.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9398.1.1 vs. uniprot
Match: A0A6H5KH57_9PHAE (Kinesin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KH57_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.730e-17
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:   16 FDRIFDEDSTTQEVYESVAQEIVHSVVRGLNGTIFAYGQPSSGKTFTMK 162
            +DRIFDEDS+TQ VY+ VA+EIVHSV RG+NGTIFAYGQ SSGKTFTM+
Sbjct:   76 YDRIFDEDSSTQAVYDGVAREIVHSVSRGMNGTIFAYGQTSSGKTFTMQ 124
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BLAST of mRNA_A-nodosum_M_contig9398.1.1 vs. uniprot
Match: A0A7S2UFQ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UFQ7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 8.900e-17
Identity = 36/55 (65.45%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 QNVLRFDRIFDEDSTTQEVYESVAQEIVHSVVRGLNGTIFAYGQPSSGKTFTMKG 165
            +N   FDR+F EDS++++VY+++AQ IV SVV GLNGTIFAYGQ SSGKT+TM+G
Sbjct:   25 RNFFTFDRVFGEDSSSKQVYDNIAQGIVKSVVTGLNGTIFAYGQTSSGKTYTMQG 79
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BLAST of mRNA_A-nodosum_M_contig9398.1.1 vs. uniprot
Match: A0A8J9SCD5_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SCD5_PHATR)

HSP 1 Score: 77.0 bits (188), Expect = 1.480e-15
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   16 FDRIFDEDSTTQEVYESVAQEIVHSVVRGLNGTIFAYGQPSSGKTFTMKG 165
            FD+ F E STTQ+VY+ VA+ IV+SVV GLNGTIFAYGQ SSGKTFTM+G
Sbjct:   50 FDKAFSESSTTQQVYDDVAKNIVNSVVTGLNGTIFAYGQTSSGKTFTMQG 99
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BLAST of mRNA_A-nodosum_M_contig9398.1.1 vs. uniprot
Match: B7G7S2_PHATC (Kinesin-like protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G7S2_PHATC)

HSP 1 Score: 77.0 bits (188), Expect = 3.090e-15
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   16 FDRIFDEDSTTQEVYESVAQEIVHSVVRGLNGTIFAYGQPSSGKTFTMKG 165
            FD+ F E STTQ+VY+ VA+ IV+SVV GLNGTIFAYGQ SSGKTFTM+G
Sbjct:   50 FDKAFSESSTTQQVYDDVAKNIVNSVVTGLNGTIFAYGQTSSGKTFTMQG 99
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BLAST of mRNA_A-nodosum_M_contig9398.1.1 vs. uniprot
Match: C3XQC9_BRAFL (Kinesin-like protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3XQC9_BRAFL)

HSP 1 Score: 74.7 bits (182), Expect = 1.180e-14
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   16 FDRIFDEDSTTQEVYESVAQEIVHSVVRGLNGTIFAYGQPSSGKTFTMKG 165
            FDR+FD + TTQ+VY+ +AQ I+ SV+ G NGTIFAYGQ SSGKT+TM G
Sbjct:   60 FDRVFDHEETTQDVYDEIAQPIIESVMEGYNGTIFAYGQTSSGKTYTMMG 109
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BLAST of mRNA_A-nodosum_M_contig9398.1.1 vs. uniprot
Match: A0A7S1B5C0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B5C0_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.330e-14
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 QNVLRFDRIFDEDSTTQEVYESVAQEIVHSVVRGLNGTIFAYGQPSSGKTFTMKG 165
            +N+  FDRIF E+ TT+EVY+     IV S + G+NGTIFAYGQ SSGKT+TM+G
Sbjct:   25 RNLFTFDRIFGENCTTREVYDEAVDGIVRSAMNGINGTIFAYGQTSSGKTYTMQG 79
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BLAST of mRNA_A-nodosum_M_contig9398.1.1 vs. uniprot
Match: A0A7S1C0M9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C0M9_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.690e-14
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   16 FDRIFDEDSTTQEVYESVAQEIVHSVVRGLNGTIFAYGQPSSGKTFTMKG 165
            FDR+F E STT+E+YE+V   IV S V GLNGTIFAYGQ SSGKT+TM+G
Sbjct:    8 FDRVFGEQSTTREIYENVVGGIVKSAVEGLNGTIFAYGQTSSGKTYTMQG 57
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BLAST of mRNA_A-nodosum_M_contig9398.1.1 vs. uniprot
Match: M4C5Y8_HYAAE (Kinesin motor domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C5Y8_HYAAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.600e-14
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    4 NVLRFDRIFDEDSTTQEVYESVAQEIVHSVVRGLNGTIFAYGQPSSGKTFTMKG 165
            NV ++D IFD  S T  +YE V + IVHS +RG+NGTIFAYGQ SSGKT+TM+G
Sbjct:   60 NVFQYDEIFDPSSDTHAMYERVGRRIVHSTLRGINGTIFAYGQTSSGKTYTMQG 113
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BLAST of mRNA_A-nodosum_M_contig9398.1.1 vs. uniprot
Match: A0A6P4XZ24_BRABE (centromere-associated protein E-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4XZ24_BRABE)

HSP 1 Score: 74.7 bits (182), Expect = 2.610e-14
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   16 FDRIFDEDSTTQEVYESVAQEIVHSVVRGLNGTIFAYGQPSSGKTFTMKG 165
            FDR+FD + TTQ+VY+ +AQ I+ SV+ G NGTIFAYGQ SSGKT+TM G
Sbjct:   60 FDRVFDHEETTQDVYDEIAQPIIESVMEGYNGTIFAYGQTSSGKTYTMMG 109
[Close]
BLAST of mRNA_A-nodosum_M_contig9398.1.1 vs. uniprot
Match: A0A8J9Z362_BRALA (CENPE protein n=7 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9Z362_BRALA)

HSP 1 Score: 74.7 bits (182), Expect = 2.610e-14
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   16 FDRIFDEDSTTQEVYESVAQEIVHSVVRGLNGTIFAYGQPSSGKTFTMKG 165
            FDR+FD + TTQ+VY+ +AQ I+ SV+ G NGTIFAYGQ SSGKT+TM G
Sbjct:   60 FDRVFDHEETTQDVYDEIAQPIIESVMEGYNGTIFAYGQTSSGKTYTMMG 109
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9398.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KH57_9PHAE3.730e-1779.59Kinesin motor domain-containing protein n=2 Tax=Ec... [more]
A0A7S2UFQ7_9STRA8.900e-1765.45Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A8J9SCD5_PHATR1.480e-1574.00Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
B7G7S2_PHATC3.090e-1574.00Kinesin-like protein (Fragment) n=1 Tax=Phaeodacty... [more]
C3XQC9_BRAFL1.180e-1466.00Kinesin-like protein n=2 Tax=Branchiostoma florida... [more]
A0A7S1B5C0_9STRA1.330e-1460.00Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S1C0M9_9STRA1.690e-1470.00Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
M4C5Y8_HYAAE2.600e-1462.96Kinesin motor domain-containing protein n=1 Tax=Hy... [more]
A0A6P4XZ24_BRABE2.610e-1466.00centromere-associated protein E-like n=1 Tax=Branc... [more]
A0A8J9Z362_BRALA2.610e-1466.00CENPE protein n=7 Tax=Branchiostoma lanceolatum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9398contigA-nodosum_M_contig9398:19115..19279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FIN0
PFAMsKinesin
Model size165
Max annot lvl2759|Eukaryota
KEGG koko:K11498
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000775,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005856,GO:0005871,GO:0005875,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022607,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043515,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044446,GO:0044464,GO:0044877,GO:0048285,GO:0051225,GO:0070925,GO:0071840,GO:0090307,GO:0098687,GO:0140014,GO:1902850,GO:1903047
Exons1
Evalue1.14e-17
EggNOG OGsCOG5059@1|root,KOG0242@2759|Eukaryota
Descriptionmicrotubule motor activity
Cds size165
COG categoryZ
BRITEko00000,ko01009,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870426.7772348-CDS-A-nodosum_M_contig9398:19114..192791680870426.7772348-CDS-A-nodosum_M_contig9398:19114..19279Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9398 19115..19279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9398.1.1prot_A-nodosum_M_contig9398.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9398 19115..19279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9398.1.1

>prot_A-nodosum_M_contig9398.1.1 ID=prot_A-nodosum_M_contig9398.1.1|Name=mRNA_A-nodosum_M_contig9398.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=55bp
QNVLRFDRIFDEDSTTQEVYESVAQEIVHSVVRGLNGTIFAYGQPSSGKT
FTMKG
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mRNA from alignment at A-nodosum_M_contig9398:19115..19279-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9398.1.1 ID=mRNA_A-nodosum_M_contig9398.1.1|Name=mRNA_A-nodosum_M_contig9398.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at A-nodosum_M_contig9398:19115..19279- (Ascophyllum nodosum dioecious)
CAAAACGTTCTCAGATTCGATCGCATTTTCGACGAAGACAGCACCACTCA
AGAAGTTTACGAGAGCGTCGCCCAAGAAATCGTCCACTCCGTGGTTCGTG
GCCTGAACGGAACGATCTTCGCCTACGGCCAGCCTTCATCGGGAAAGACC
TTCACCATGAAGGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9398:19115..19279-

>mRNA_A-nodosum_M_contig9398.1.1 ID=mRNA_A-nodosum_M_contig9398.1.1|Name=mRNA_A-nodosum_M_contig9398.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=165bp|location=Sequence derived from alignment at A-nodosum_M_contig9398:19115..19279- (Ascophyllum nodosum dioecious)
CAAAACGTTCTCAGATTCGATCGCATTTTCGACGAAGACAGCACCACTCA
AGAAGTTTACGAGAGCGTCGCCCAAGAAATCGTCCACTCCGTGGTTCGTG
GCCTGAACGGAACGATCTTCGCCTACGGCCAGCCTTCATCGGGAAAGACC
TTCACCATGAAGGGG
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