mRNA_A-nodosum_M_contig938.9.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig938.9.1
Unique NamemRNA_A-nodosum_M_contig938.9.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig938.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig938contigA-nodosum_M_contig938:75345..77340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size778
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_011250.1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870423.7750425-UTR-A-nodosum_M_contig938:75344..756791680870423.7750425-UTR-A-nodosum_M_contig938:75344..75679Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig938 75345..75679 -
1680870423.8189774-UTR-A-nodosum_M_contig938:77236..773401680870423.8189774-UTR-A-nodosum_M_contig938:77236..77340Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig938 77237..77340 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870423.7908235-CDS-A-nodosum_M_contig938:75679..758941680870423.7908235-CDS-A-nodosum_M_contig938:75679..75894Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig938 75680..75894 -
1680870423.8029695-CDS-A-nodosum_M_contig938:77112..772361680870423.8029695-CDS-A-nodosum_M_contig938:77112..77236Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig938 77113..77236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig938.9.1prot_A-nodosum_M_contig938.9.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig938 75680..77236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig938.9.1

>prot_A-nodosum_M_contig938.9.1 ID=prot_A-nodosum_M_contig938.9.1|Name=mRNA_A-nodosum_M_contig938.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=113bp
MSSMLLAKENASIVPPEQQESLVSVLSVASSALLLLIVMGAVYLTYSDWQ
NKRDMEKAEKFIASTGELPELATQNPKQSPNPNPAEGEGEEEAGGNRQFR
RMAKKERKKSKS*
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mRNA from alignment at A-nodosum_M_contig938:75345..77340-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig938.9.1 ID=mRNA_A-nodosum_M_contig938.9.1|Name=mRNA_A-nodosum_M_contig938.9.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1996bp|location=Sequence derived from alignment at A-nodosum_M_contig938:75345..77340- (Ascophyllum nodosum dioecious)
GTGTTCGCAGAGAGAGCTTCCGAACGTTCGGAAGAGTACAACATGCGCGA
CATGTCTGGCCTCAGACTATATCACGGACCCCTAGGGCTGGAGCTACTAC
TAGCATGAGCTCGATGCTTCTCGCCAAAGAAAACGCGTCGATCGTCCCTC
CGGAACAGCAGGAATCTTTGGTCTCCGTCCTGAGCGTGGCGTCCTCGGCG
CTACTACTCCTCATCGTTATGGGGGCCGGTGAGTCGCGAAGGAGCAGAAG
GGACATGTTCCCCGTGTCCCCTTTTCGCAAAATTGCAATCTATTGATCCT
CTATGGTCACACATATAGCAAGAGTAAGGATCAACCGGATAAAGTTGCCA
ATCCTGCTCGTGGTCAGCTGAACAGAGAAAATTGAAAATTTCCCTGTCCC
CGTTCGCGCCTAAGAATTTGGTCTCGCGAGACGGATTCGGCAGTCCTGTC
CTGCGTCAGCCTGCTCATCTACATACCCAGGCTGAATCTGGTGCTTACTT
ACGAGATTCCTCCCGAGTTCCGCGGTGGCGTCCATTTATCTATTTAAACT
GACATACGCCATTGGTTCAGTCCCGGGTTTATCGGGTCACGCAATTGCGT
ACCGATGGCATCCACTGCCGAGAGTCCGCCGGCACAGGCCCAGTAAACCT
CAAGGTAGTTCCAAACGGGTGCTGCCTTGGCAGGTCATCATGGCCCAATT
GATATGTGTCTCTCTTTCCCACACCCGCTAGTGGTATGAAGTGAGTGGGC
ATGTTGCTCTAGCTCTGTGAAGGATTCATTTTTAGGCATGGGTCGCTTTG
AGTGCAACGGCAGCCGCAACCGTCCGTTGTCGCAGCATTATTTCCCCCTG
ACTGGGGGATGCTCAGAAGGTCTAGGTGCGTTCTGATTTTTTTACTGCCA
TAGTATTAATGTATTAATTGTATACATGTCTGTTCAGACCCAACAAAAAA
CAGCATTGCCACCTATAGGTGTACTGCTCTTGTTGTATGGTTGTATGTAG
CTCTACTCGTACTGTTCCTCAGTAGACTACACCATGAACTTGTGCTGTTT
CGTACTTCGTTAACGTTAGCAGTATAAAATGCCTAATATGATAGTTGCAG
CTACTTTATGCCGTACAAACTGTTTTGTAGACATTGACGTTACGGGCGCT
CAAGGTTTTCGAGCAAAAGCCGAGCCACACGACTTCGAAGCCATTCGTTA
GGAATCACACCCCCTTGCGAGTCTTATCCCATCCCTCTCGTGAGGGGAGT
CCATGGTGCTAGTAGACCCAAGTGTCGCAGGGCGGGGGGGATTGTTATAA
GTTGTACGAGCACTAGGTGACACGATTGGGGAAAAATCCAAAATCGATAC
TTTTGTAGAGTAGTTAGTTCACTGACTCGGCCGAGAAAGTACTCATGATC
CATCCTCCTTCCTCTGCCGCCCTCTTTTCTTATATTATAAAAACAGTGTA
CTTGACGTACTCCGACTGGCAAAATAAGCGGGATATGGAGAAGGCGGAGA
AATTCATCGCGAGCACGGGAGAGCTACCAGAGCTTGCCACTCAGAATCCG
AAACAGAGCCCGAATCCGAATCCGGCGGAGGGCGAGGGGGAGGAGGAAGC
AGGGGGCAACCGGCAGTTCCGGCGCATGGCTAAGAAGGAGCGAAAGAAGT
CCAAGTCTTAAAAGTAACGAGCGCACGCGTGGCTGGTGTTTTAAGGGTCG
AAAAGTCACCCCGCGTGGTGCTCGAGATCGTAAAACCTTTCGAAGGTTGA
TTTTTTTCACTAGAGTAAATAAAAGGTGTTTATATAAATAGACGGCAGGT
TTTTCCTCGAACGGAGGTAATTTGGGGGGCTCCACAGCTGTACATTGTAT
CTACCGGCACCGTGTTTTATCACGCCAGCGCTTTGTGGTACATTATTTTT
GCTCCGGCAGCACAGCAACATAGCGGCCAGTCGTGTTTCATCTCAAACAG
AGCACGGGAAGATAGCGCAGCCGCGCCCTCTCCGCCTTCGCTCCGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig938:75345..77340-

>mRNA_A-nodosum_M_contig938.9.1 ID=mRNA_A-nodosum_M_contig938.9.1|Name=mRNA_A-nodosum_M_contig938.9.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=339bp|location=Sequence derived from alignment at A-nodosum_M_contig938:75345..77340- (Ascophyllum nodosum dioecious)
ATGAGCTCGATGCTTCTCGCCAAAGAAAACGCGTCGATCGTCCCTCCGGA
ACAGCAGGAATCTTTGGTCTCCGTCCTGAGCGTGGCGTCCTCGGCGCTAC
TACTCCTCATCGTTATGGGGGCCGTGTACTTGACGTACTCCGACTGGCAA
AATAAGCGGGATATGGAGAAGGCGGAGAAATTCATCGCGAGCACGGGAGA
GCTACCAGAGCTTGCCACTCAGAATCCGAAACAGAGCCCGAATCCGAATC
CGGCGGAGGGCGAGGGGGAGGAGGAAGCAGGGGGCAACCGGCAGTTCCGG
CGCATGGCTAAGAAGGAGCGAAAGAAGTCCAAGTCTTAA
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