mRNA_A-nodosum_M_contig938.11.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig938.11.1 vs. uniprot
Match: D7G731_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G731_ECTSI) HSP 1 Score: 425 bits (1092), Expect = 2.190e-139 Identity = 265/482 (54.98%), Postives = 330/482 (68.46%), Query Frame = 2
Query: 5 TRERADARSKEANVLRKRVKELEPEMRRLVQELEGSRRGEAPRNSSRSP---VTPGGQAQENDVVLGGSLAAAESQANTFQLRCDKFDMEQKVRATATAVD----ESANLIGEDG----VPEAKGADEDDDRYNDVGVKNVDARLIKQQLEVAERRVKNSWYINEAHETMAAKATEREREANARAAELERRLWRAVEKLESIQRRDTIAGLSASCYRDEGGIHDAERELRVDLMDPELDLPINTAKRRKLARLKQRLLRLRRRHESQLVALRQARAVERLHSDLCGAAASGDLAETKRLLQTGISVNAPDEAGLSAFLYACGQPSEDLVCAMVDAGGDVLDGNGSITGLMIAARKGFIRVAQALINKGADLHARDSAGGTALHSSVLGGHVDLSRVLLEAGSDCNAVDKGTNAPLHLLAA-QNAHPGDESV-----GAQLAALLLEWGASADIKNSRGLTPITAALEAKRKSLVVAYEDFFG 1399
TR+RADAR KEA+ LR+RV+ELEPE+R+L ELE R+ EA R+ R P E+DVVL LAAA+S+A QLRCD+ + E+ R T T D + A E+G A D DD R+ + K+ +AR IK+QLEVAERRVKNS+YINEAHE++AAKATERE+EANARAAEL RRL RA+EKLESI+R+D I L SC RDE AERELR MDPEL LP+NTAKRR++AR ++RL RLR RHESQ AL QA+A ERLH+DL AA GD+ +T + L +GISVN PD++GLSAFLYACGQ + +LV +VDAGGDVLDG+G+ITGL+IAARKG + V Q L+ GAD+ ARDSAGGTALH++ L HVD +LA+ + G V GA +A LLLEWGASADIKNS+GLTPI+AAL+ + +++V+AY +FFG
Sbjct: 32 TRKRADARGKEADSLRQRVQELEPEVRKLANELEKRRQREASRSPLRGRKQHAPPSATLGEDDVVLRARLAAADSRAKILQLRCDRLEFERSFRKTTTDPDGHHRQDARAAQEEGDGGSSAHAATMDTDDGRHRALD-KDNEARRIKRQLEVAERRVKNSFYINEAHESLAAKATEREKEANARAAELGRRLDRALEKLESIERKDMILNLETSCARDEEQTFFAERELRAHQMDPELYLPVNTAKRRQVARSEKRLRRLRLRHESQSAALSQAQATERLHADLRRAAGLGDIPQTMKCLDSGISVNVPDQSGLSAFLYACGQANAELVQILVDAGGDVLDGDGTITGLIIAARKGTMGVVQTLLEAGADVCARDSAGGTALHAATLHRHVDXXXXXXXXXXXXXXXXXXXXXXXXMLASVSSGKDGGSDVRGGETGADVAGLLLEWGASADIKNSKGLTPISAALDTRNRAMVLAYREFFG 512
BLAST of mRNA_A-nodosum_M_contig938.11.1 vs. uniprot
Match: A0A7S2NX54_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NX54_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 2.140e-15 Identity = 63/172 (36.63%), Postives = 93/172 (54.07%), Query Frame = 2
Query: 818 DLCGAAASGDLAETKRLLQTGISVNAPDEAGLSAFLYACGQPSEDLVCAMVDAGGDVLDGN----GSITGLMIAARKGFIRVAQALINKGADLHARDSAGGTALHSSVLGGHVDLSRVLLEAGSDCNAVDKGTNAPLHLLAAQNAHPGDESVGAQLAALLLEWGASADIKNS 1321
+L AA+ ++ K L+ G SVN PDE+G SAF YACGQ S D+V ++D D D N S+ L++AA+ V + L+N GAD + +D G TALH G + + L+E G+D +++D N+ + A QN H G + A+LL+ GA+ NS
Sbjct: 2 ELMVAASDNNVDMVKELMMKGFSVNFPDESGFSAFKYACGQGSIDVVKYIIDQ--DEADINYCDEKSMPPLILAAKNAQDEVLECLLNGGADANVKDHNGRTALHIVCHSGRSEPALKLIEIGADIDSIDMKGNSAIFYGARQN-HDG-------IVAMLLQKGATTRYFNS 163
BLAST of mRNA_A-nodosum_M_contig938.11.1 vs. uniprot
Match: A0A522HAP4_9GAMM (Uncharacterized protein n=1 Tax=Rhodanobacter sp. TaxID=1883446 RepID=A0A522HAP4_9GAMM) HSP 1 Score: 84.7 bits (208), Expect = 2.370e-13 Identity = 72/221 (32.58%), Postives = 99/221 (44.80%), Query Frame = 2
Query: 818 DLCGAAASGDLAETKRLLQTGISVNAPDEAGLSAFLYACGQPSEDLVCAMVDAGGDV-LDGNGSIT---------------------------------GLMIAARKGFIRVAQALINKGADLHARDSAGGTALHSSVLGG--HVDLSRV------LLEAGSDCNAVDKGTNAPLHLLAAQNAHPG---DESVGAQLAALLLEWGASADIKNSRGLTPITA 1345
DL AAA G LA +RLL+ G +V+A D+ G SA L ACG +++ ++DAG D L N +T LM+AA G + L++ GAD+HA DS G +ALH++ G H D R LL G++ N D+ PL LL PG D + L LLL+ GA + RG+T + A
Sbjct: 864 DLPAAAAHGALASVQRLLELGFAVDARDDQGASALLRACGAGHQEIASCLLDAGADPGLTSNSGVTPLSAAVIARREALVELLLSRQVALEQRLPSDATALMVAAAVGHPEIVTRLLDAGADIHAVDSHGRSALHAAAQFGFEHSDSLRTRRLFDALLSRGAEINQADREGKTPLLLLLGAQLRPGSDCDATHIGSLVPLLLDAGAKVTHADQRGVTALHA 1084
BLAST of mRNA_A-nodosum_M_contig938.11.1 vs. uniprot
Match: A0A4R3N781_9GAMM (Uncharacterized protein n=1 Tax=Thermomonas haemolytica TaxID=141949 RepID=A0A4R3N781_9GAMM) HSP 1 Score: 71.2 bits (173), Expect = 3.750e-9 Identity = 73/225 (32.44%), Postives = 93/225 (41.33%), Query Frame = 2
Query: 809 LHSDLCGAAASGDLAETKRLLQTGISVNAPDEAGLSAFLYACGQPSEDLVCAMVDAGGD--------------------------------VLDGN--GSITGLMIAARKGFIRVAQALINKGADLHARDSAGGTALHSSVLGGHVDLSR--------VLLEAGSDCNAVDKGTNAPLHLLAAQNAHPG---DESVGAQLAALLLEWGASADIKNSRGLTPITAA 1348
L SDL A GDL +RLL G+ VNA D G +A L A G LV ++ G D LD G ++ LM+AA G +A L+ GADLHA D+ G TALH + L G R LL AG+D +A + PL LL A PG +E V LL+ D ++SRG P+ A
Sbjct: 817 LPSDLPATAIVGDLDAARRLLALGLPVNATDAQGCTALLRAAGGGHRALVEFLLAQGADPGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDQRLPGEVSVLMLAAALGLPDMAARLLQAGADLHATDAQGQTALHCAALYGFTARERPRLMALLDALLLAGADPHAATRAGLTPLLLLLGARAEPGTPANEDVLLGALERLLDEDVRLDDRDSRGYGPLHLA 1041
BLAST of mRNA_A-nodosum_M_contig938.11.1 vs. uniprot
Match: A0A4Q6GXX9_9GAMM (Ankyrin repeat domain-containing protein n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A4Q6GXX9_9GAMM) HSP 1 Score: 64.7 bits (156), Expect = 4.010e-8 Identity = 52/145 (35.86%), Postives = 76/145 (52.41%), Query Frame = 2
Query: 968 VDAGGDVLDGNGSITGLMIAARKGFIRVAQALINKGADLHARDSAGGTALHSSVLGGHVDLSRVLLEAGSDCNAV---DKGTNAPLHLLAAQNAHPGDESVGAQLAALLLEWGASADIKNSRGLTPITAALEAKRKSLVVAYEDF 1393
+D ++GN T LM+AA KG +R A+AL+ KGA ++ AG TALH + GG D++R+L+ + NAV + G PL ++AA+ A PG + LLL GA +KN+ GLT A A + + F
Sbjct: 89 IDLEAQAMNGN---TALMMAAFKGNLRAAEALLAKGAKVNR---AGWTALHYAAAGGSEDIARLLIARKALLNAVSPRESGAYTPL-MMAAREAQPG-------MVRLLLAAGADPALKNTEGLTASQIAERAGQAEIAAMISGF 219
BLAST of mRNA_A-nodosum_M_contig938.11.1 vs. uniprot
Match: A0A812XAA0_9DINO (Kidins220b protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812XAA0_9DINO) HSP 1 Score: 66.2 bits (160), Expect = 4.880e-8 Identity = 62/172 (36.05%), Postives = 86/172 (50.00%), Query Frame = 2
Query: 842 GDLAETKRLLQTGISVNAPDEAGLSAFLYACGQPSEDLVCAMVDAGGDVLDGNGSITGLMIAARKGFIRVAQALINKGADLHARDSAG--GTALHSSVLGGHVDLSRVLLEAGSDCNAVDKGTNAPLHLLAAQNAHPGDESVGAQLAALLLEWGASADIKNSRGLTPITAAL 1351
G L +RLL+ G +V+ D AFL +P DL +V V I L+ AAR+G + V + +N+ + D G +ALH +V GHVD++R+LLEAG+ + K N PL LAA+ H G Q LLLE A +I NS G +P+ AL
Sbjct: 43 GQLRFKQRLLKEGSTVHNDD-----AFL----EPPLDLTLVLVPF---VTASQAQIDELIKAARRGDVSVVEDCLNRPQE---PDPPGQKASALHHAVQNGHVDVARLLLEAGASKDRTTKENNTPL-CLAAELEHAGQ----VQCVQLLLESRADVEIANSEGRSPLLQAL 194
BLAST of mRNA_A-nodosum_M_contig938.11.1 vs. uniprot
Match: A0A1Q9CWV4_SYMMI (Kinase D-interacting substrate of 220 kDa n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9CWV4_SYMMI) HSP 1 Score: 65.9 bits (159), Expect = 1.110e-7 Identity = 62/172 (36.05%), Postives = 86/172 (50.00%), Query Frame = 2
Query: 842 GDLAETKRLLQTGISVNAPDEAGLSAFLYACGQPSEDLVCAMVDAGGDVLDGNGSITGLMIAARKGFIRVAQALINKGADLHARDSAG--GTALHSSVLGGHVDLSRVLLEAGSDCNAVDKGTNAPLHLLAAQNAHPGDESVGAQLAALLLEWGASADIKNSRGLTPITAAL 1351
G L +RLL+ G +V+ D AFL +P DL +V V I L+ AAR+G + V + +N+ + D G +ALH +V GHVD++R+LLEAG+ + K N PL LAA+ H G Q LLLE A +I NS G +P+ AL
Sbjct: 43 GQLRFKQRLLKEGSTVHNDD-----AFL----EPPLDLTLVLVPF---VTASTAQIDELIKAARRGDVSVVEDCLNRPQE---PDPPGQKASALHHAVQNGHVDVARLLLEAGASKDRTTKENNTPL-CLAAELEHAGQ----VQCIQLLLESRADVEIANSEGRSPLLQAL 194
BLAST of mRNA_A-nodosum_M_contig938.11.1 vs. uniprot
Match: UPI001282998B (ankyrin repeat domain-containing protein n=1 Tax=Pseudoxanthomonas sp. X-1 TaxID=2571115 RepID=UPI001282998B) HSP 1 Score: 63.2 bits (152), Expect = 1.880e-7 Identity = 58/175 (33.14%), Postives = 79/175 (45.14%), Query Frame = 2
Query: 866 LLQTGISVNAPDEAGLSAFLYACGQPSEDLVCAMVDAGGDV---LDGNGSITGLMIAARKGFIRVAQALINKGADLHARDSAGGTALHSSVLGGHVDLSR--------VLLEAGSDCNAVDKGTNAPLHLLAAQNAHPG---DESVGAQLAALLLEWGASADIKNSRGLTPITAA 1348
LL G P G + A +V A+++ G + L G S+ LM+AA G VA L+ GAD+HA D+ G TALH + L G + R LL AG+ + D GT PL LL A PG DE V LL+ + D+++ RG P+ A
Sbjct: 8 LLARGADPQRPARTGAAPLSAAVSMRQTAIVGALLETGASLEHRLPGEVSV--LMLAAALGLPDVAARLLTAGADVHAVDAQGLTALHCAGLFGFIARDRPRLLALLDTLLLAGAQPDGPDPGTVTPLLLLLGARAEPGTVCDEDVILAGLERLLQEDVALDVRDPRGFGPLHLA 180
BLAST of mRNA_A-nodosum_M_contig938.11.1 vs. uniprot
Match: A0A4Q8L7S3_9GAMM (Uncharacterized protein n=11 Tax=Pseudoxanthomonas TaxID=83618 RepID=A0A4Q8L7S3_9GAMM) HSP 1 Score: 65.1 bits (157), Expect = 3.100e-7 Identity = 69/223 (30.94%), Postives = 90/223 (40.36%), Query Frame = 2
Query: 815 SDLCGAAASGDLAETKRLLQTGISVNAPDEAGLSAFLYACGQPSE---DLVCAMVDAGGDVLDGN-------------------------------GSITGLMIAARKGFIRVAQALINKGADLHARDSAGGTALHSSVLGGHVDLSR--------VLLEAGSDCNAVDKGTNAPLHLLAAQNAHPG---DESVGAQLAALLLEWGASADIKNSRGLTPITAA 1348
+DL AA +GD +RLL G V+A D G SA L A G DL+ A G ++ LM+AA G VA L+ GAD+HA D+ G TALH + L G + R LL AG+ + D GT PL LL A PG DE V LL+ + D+++ RG P+ A
Sbjct: 840 ADLPAAAKAGDADAVRRLLDLGFDVDAQDAQGCSALLRAAGGGHGAVVDLLLARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIEYRLPGEVSVLMLAAALGLPDVAARLLTAGADVHAVDAQGLTALHCAGLFGFIARDRPRLLALLDTLLLAGAQPDGPDGGTVTPLLLLLGARAEPGTACDEDVILAGLERLLDENVALDVRDPRGFGPLHLA 1062
BLAST of mRNA_A-nodosum_M_contig938.11.1 vs. uniprot
Match: A0A8C5TCU4_9PASS (Palmitoyltransferase n=2 Tax=Passeriformes TaxID=9126 RepID=A0A8C5TCU4_9PASS) HSP 1 Score: 63.2 bits (152), Expect = 8.530e-7 Identity = 60/221 (27.15%), Postives = 94/221 (42.53%), Query Frame = 2
Query: 818 DLCGAAASGDLAETKRLLQTGISVNAPDEAGLSAFLYACGQPSEDLVCAMVDAGG--DVLDGNGSITGLMIAARKGFIRVAQALINKGADLHARDSAGGTALHSSVLGGHVDLSRVLLEAGSDCNAVDKGTNAPLHLLAAQNA----------------------------HPGDESVGAQLAALLLEWGASADIKNSRGLTPITAALEAKRKSLVVAYED 1390
D+ A G L K L++ G V PD+ ++ +A ++LV + G D L G+ + T L A R+G + + L+ GAD D G +++H +VL H+ + L+ G + + D PL +L AQ A H S + LLLE GAS DIKN +G TP+ A +++ LV ++
Sbjct: 45 DIVKATQYGMLERCKELVEAGYDVRQPDKENVTLLHWAAINNRQELVKYYISKGAIVDQLGGDLNSTPLHWAIRQGHLPMVMLLLKCGADPSLIDGEGFSSIHLAVLFQHMPIVAYLISKGQNIDTTDFNGQTPL-MLTAQKAIGPEPTRFLLKFNPSLNAVDNVQKNTALHWAIASGNSSAVDLLLEAGASLDIKNVKGETPLDLAYQSQNHFLVYMLQE 264 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig938.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig938.11.1 >prot_A-nodosum_M_contig938.11.1 ID=prot_A-nodosum_M_contig938.11.1|Name=mRNA_A-nodosum_M_contig938.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=502bp MRRLVQELEGSRRGEAPRNSSRSPVTPGGQAQENDVVLGGSLAAAESQANback to top mRNA from alignment at A-nodosum_M_contig938:85966..88273- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig938.11.1 ID=mRNA_A-nodosum_M_contig938.11.1|Name=mRNA_A-nodosum_M_contig938.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2308bp|location=Sequence derived from alignment at A-nodosum_M_contig938:85966..88273- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig938:85966..88273- >mRNA_A-nodosum_M_contig938.11.1 ID=mRNA_A-nodosum_M_contig938.11.1|Name=mRNA_A-nodosum_M_contig938.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1506bp|location=Sequence derived from alignment at A-nodosum_M_contig938:85966..88273- (Ascophyllum nodosum dioecious)back to top |