mRNA_A-nodosum_M_contig9351.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9351.1.1
Unique NamemRNA_A-nodosum_M_contig9351.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9351.1.1 vs. uniprot
Match: A0A6H5JI70_9PHAE (5'-nucleotidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI70_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 2.570e-99
Identity = 152/260 (58.46%), Postives = 188/260 (72.31%), Query Frame = 1
Query:   22 DFDRTLTKFWVNGEMGYSCHMVIANSGLLSEDYHDKTTELRNRYYPMEARDHLGVDPDLPHEEKLEAMKQWVLEAHEAMVETGMTKSTIVEAVSKANLELRPGHDKLFRLLETEKVPFLVFSAGLADVLEEIFRQRAEAPVPSTCHVISNRMEFDDEGKMIGFKGKTYHVFNKLASPE--EPYFRTEEMKGRTNVLLLGDSLGDLKMSKGIETKEVLTIGFLNDNVDEMLEEYMDAYDAVIVGDGGLDLALEILGEVTAK 795
            DFD TLTKFWVNG+ G SCH VI  SGLL E +H +T ELRN YYP+E      V PDL  E +LE M +WV +AH+AMV  G+TK  +  AVSKANL  RPGH +L R ++   VPFL+FSAG+ADVLEE FRQ +  P+PST  VISNRM FD++G M GF G+ +HVFNK AS    +PYF T+EM+ R+NVLLLGDSLGDL M+KG+  +E LT+GFLND V+E  + Y+ AYD VI+GDG  D  LE+L +V +K
Sbjct:   47 DFDFTLTKFWVNGKRGDSCHAVIDGSGLLGEGFHKRTWELRNHYYPLE------VAPDLSPEMRLEMMVEWVTKAHDAMVAAGITKDILSAAVSKANLLFRPGHGELLRWVDKHGVPFLMFSAGIADVLEEAFRQHSAEPLPSTSRVISNRMAFDEDGNMTGFVGECFHVFNKHASASAVKPYFETDEMRCRSNVLLLGDSLGDLNMAKGLRAEETLTVGFLNDKVEERADAYLKAYDVVILGDGSFDFVLELLEQVASK 300          
BLAST of mRNA_A-nodosum_M_contig9351.1.1 vs. uniprot
Match: D8LDF4_ECTSI (5'-nucleotidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDF4_ECTSI)

HSP 1 Score: 299 bits (765), Expect = 6.720e-99
Identity = 148/260 (56.92%), Postives = 190/260 (73.08%), Query Frame = 1
Query:   22 DFDRTLTKFWVNGEMGYSCHMVIANSGLLSEDYHDKTTELRNRYYPMEARDHLGVDPDLPHEEKLEAMKQWVLEAHEAMVETGMTKSTIVEAVSKANLELRPGHDKLFRLLETEKVPFLVFSAGLADVLEEIFRQRAEAPVPSTCHVISNRMEFDDEGKMIGFKGKTYHVFNKLASPE--EPYFRTEEMKGRTNVLLLGDSLGDLKMSKGIETKEVLTIGFLNDNVDEMLEEYMDAYDAVIVGDGGLDLALEILGEVTAK 795
            DFD TLTKFWVNG+ G SCH VI  SGLL E +H +T+ELR+ YYP+E      V PDL  E ++E M +WV +AHEAMV  G+TK  +  AVSKANL  RPGH +L R ++   VP L+FSAG+ADVLEE FRQ +  P+PST  V+SNRM FD++G M GF G+ +HVFNK AS    +PYF T+EM+ R++VLLLGDSLGDL M+KG+  +E+LT+GFLND ++E  + Y+ AYD +I+GDGG D  LE+L EV +K
Sbjct:   13 DFDFTLTKFWVNGKRGDSCHAVIDESGLLGEGFHKRTSELRDHYYPLE------VAPDLSPEMRVEMMVEWVTKAHEAMVAAGITKDILSAAVSKANLLFRPGHGELLRWVDKYGVPLLMFSAGIADVLEEAFRQHSAEPLPSTSRVVSNRMAFDEDGNMTGFVGECFHVFNKHASSSAVKPYFETDEMRCRSSVLLLGDSLGDLNMAKGLSAEEILTVGFLNDKIEERTDAYLKAYDVIILGDGGFDFVLELLEEVASK 266          
BLAST of mRNA_A-nodosum_M_contig9351.1.1 vs. uniprot
Match: A0A835YMP4_9STRA (5'-nucleotidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP4_9STRA)

HSP 1 Score: 245 bits (626), Expect = 9.320e-78
Identity = 127/254 (50.00%), Postives = 173/254 (68.11%), Query Frame = 1
Query:   37 LTKFWVNGEMGYSCHMVIANSGLLSEDYHDKTTELRNRYYPMEARDHLGVDPDLPHEEKLEAMKQWVLEAHEAMVETGMTKSTIVEAVSKANLELRPGHDKLFRLLETEKVPFLVFSAGLADVLEEIFRQRAEAPVPSTCHVISNRMEFDD-EGKMIGFKGKTYHVFNKLASP--EEPYFRTEEMKGRTNVLLLGDSLGDLKMSKGIETKEVLTIGFLNDNVDEMLEEYMDAYDAVIVG-DGGLDLALEILGEV 786
            L  F VNG  G SCH  +   GLL+E+YH     L+ +YYP+E      +D  L  E+++  M++WV +AH+A+ + G+TK+TI +AV +AN+ LR  H +LF  L+   +P LVFSAGLADVLEE+ RQ A AP+P+  HVISNRM F+   G  IGF G+ +HVFNK A    +EPYF +EE+K R NVLLLGDSLGDL+M+ G+E  EVL++GFLND  +E +  Y+  YD VI+G D GL  AL+++ E+
Sbjct:   23 LHSFMVNGRRGSSCHGCLEYCGLLTEEYHRTVQALKQKYYPLE------LDTSLTQEQRVAFMEEWVEQAHDALSQAGLTKATIEQAVREANIALRGAHAELFTELDARAIPLLVFSAGLADVLEEVIRQHASAPLPAGAHVISNRMSFEPANGGFIGFTGQLFHVFNKRAGAVLDEPYFMSEEVKLRRNVLLLGDSLGDLQMASGLEADEVLSVGFLNDQAEERIGSYLAGYDVVIIGPDAGLQYALDLVREL 270          
BLAST of mRNA_A-nodosum_M_contig9351.1.1 vs. uniprot
Match: A0A7S3UTG8_HETAK (5'-nucleotidase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTG8_HETAK)

HSP 1 Score: 210 bits (534), Expect = 4.980e-63
Identity = 114/247 (46.15%), Postives = 152/247 (61.54%), Query Frame = 1
Query:   22 DFDRTLTKFWVNGEMGYSCHMVIANSGLLSEDYHDKTTELRNRYYPMEARDHLGVDPDLPHEEKLEAMKQWVLEAHEAMVETGMTKSTIVEAVSKANLELRPGHDKLFRLLETEKVPFLVFSAGLADVLEEIFRQRAEAPVPSTCHVISNRMEFDDEGKMIGFKGKTYHVFNKLASP--EEPYFRTEEMKGRTNVLLLGDSLGDLKMSKGIETKEVLTIGFLNDNVDEMLEEYMDAYDAVIVGDGGL 756
            DFD TLTKF  +G+MG S H V+A   +LSE+YH     L +RYYP+E       +P +   EK+ AM +W    H A+VE G+T+  +  AV+ A ++LR G   LF   E   VP L+FSAGL DVL E+  Q    P+PS  HVISN MEFD  GK++GF    +HV+NK A    + P+F  E ++ R N+LL+GDS GD +M+ G+E   VL IGFLN  V+E ++ Y   YD V+ GDGGL
Sbjct:   93 DFDYTLTKFHYDGKMGKSTHGVLAECDMLSEEYHRTARALFDRYYPVET------NPSMSQAEKVPAMVEWWEADHAALVEHGLTRDVLRSAVAAAGVQLRAGCVDLFDWAEGRGVPVLLFSAGLGDVLTEVLAQNLNKPLPSHVHVISNTMEFDATGKLVGFPPPLFHVYNKNAGAVKDHPFFG-ESVQARKNILLIGDSTGDARMADGLEGTTVLRIGFLNTKVEERMDTYKGLYDVVLTGDGGL 332          
BLAST of mRNA_A-nodosum_M_contig9351.1.1 vs. uniprot
Match: A0A7S3LZW9_9STRA (5'-nucleotidase n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZW9_9STRA)

HSP 1 Score: 208 bits (530), Expect = 2.280e-62
Identity = 118/265 (44.53%), Postives = 169/265 (63.77%), Query Frame = 1
Query:   22 DFDRTLTKFWVNGEMGYSCHMVIANSGLLSEDYHDKTTELRNRYYPMEARDHLGVDPDLPHEEKLEAMKQWVLEAHEAMVETGMTKSTIVEAVSKA----NLELRPGHDKLFRLLETEKVPFLVFSAGLADVLEEIFRQRAEAPVPSTCHVISNRMEFDD--EGKMIGFKGKTYHVFNKLASP--EEPYFRTEEMKGRTNVLLLGDSLGDLKMSKGIETKE--VLTIGFLNDNVDEMLEEYMDAYDAVIVGDGGLDLALEILGEV 786
            DFD T+TKF++NG  G SCH +I + GL++ +YHD+   L+ +YYP+E      VDP L  EEK + M +WV +AHE +   G+T+S +  AV  A     + LR   D    L  + KVP L+FSAG+ADVLEEI R++      S  HVISNR  F++  EGK+ GF+    HVFNK ++      +F TE++K RTN+LLLGDSLGD+ MS+G+E  +  ++ +GFLND V+ M ++Y++ YD VI+ D G D+   +L E+
Sbjct:   79 DFDFTITKFYMNGVRGASCHKIIEDCGLMAAEYHDEAQGLQAKYYPLE------VDPTLNMEEKTKFMIEWVEKAHELLELHGLTRSVVTRAVHSALATGKVGLREKADTFLSLASSSKVPSLIFSAGIADVLEEILREQMAVDW-SQVHVISNRCIFEESGEGKVTGFEQPLLHVFNKKSTAYLHTNFFNTEDIKDRTNLLLLGDSLGDITMSEGMEINDDRIIKVGFLNDRVERM-DQYLEKYDVVILDDPGFDIPYYLLQEI 335          
BLAST of mRNA_A-nodosum_M_contig9351.1.1 vs. uniprot
Match: UPI001401F492 (cytosolic 5'-nucleotidase 3A isoform X1 n=2 Tax=Amblyraja radiata TaxID=386614 RepID=UPI001401F492)

HSP 1 Score: 204 bits (520), Expect = 5.460e-61
Identity = 112/258 (43.41%), Postives = 161/258 (62.40%), Query Frame = 1
Query:   22 DFDRTLTKFWVNGEMGYSCHMVIANSGLLSEDYHDKTTELRNRYYPMEARDHLGVDPDLPHEEKLEAMKQWVLEAHEAMVETGMTKSTIVEAVSKANLELRPGHDKLFRLLETEKVPFLVFSAGLADVLEEIFRQRAEAPVPSTCHVISNRMEFDDEGKMIGFKGKTYHVFNKL--ASPEEPYFRTEEMKGRTNVLLLGDSLGDLKMSKGIE-TKEVLTIGFLNDNVDEMLEEYMDAYDAVIVGDGGLDLALEILGEV 786
            DFD TL+KF  NG+   +CH VI N  L+SED   K  ++RN+YYP+E      VDP +  E+K   M +W  +AH  +VE G+ K  +   V ++++ LR G++  F  L    +P  +FSAG+ DVLEE+  Q       S   V+SN M+FD++G + GFKG+  HV+NK   A     YF  +++K   N++LLGDSLGDL M+ G++ T+ +L IGFLND V+E LE+YMD+YD V+VG+  LDL   IL ++
Sbjct:   83 DFDMTLSKFLHNGKRCSTCHNVIDNCKLISEDCRKKLVQIRNKYYPIE------VDPTISTEDKYPFMVEWWTKAHNLLVEQGIRKEKLAAVVRESDVTLRDGYELFFDKLNERNIPVFIFSAGIGDVLEEVITQ--VGVFHSNVKVVSNFMDFDEKGVLKGFKGELIHVYNKRDGALRSSEYF--DKLKDNCNIILLGDSLGDLNMADGVQNTESILKIGFLNDKVEESLEKYMDSYDIVLVGEESLDLVNAILQKI 330          
BLAST of mRNA_A-nodosum_M_contig9351.1.1 vs. uniprot
Match: A0A0D2U9Z3_CAPO3 (5'-nucleotidase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U9Z3_CAPO3)

HSP 1 Score: 206 bits (523), Expect = 1.120e-60
Identity = 115/257 (44.75%), Postives = 155/257 (60.31%), Query Frame = 1
Query:   22 DFDRTLTKFWVNGEMGYSCHMVIANSGLLSEDYHDKTTELRNRYYPMEARDHLGVDPDLPHEEKLEAMKQWVLEAHEAMVETGMTKSTIVEAVSKANLELRPGHDKLFRLLETEKVPFLVFSAGLADVLEEIFRQRAEAPVPSTCHVISNRMEFDDEGKMIGFKGKTYHVFNK--LASPEEPYFRTEEMKGRTNVLLLGDSLGDLKMSKGIETKEVLTIGFLNDNVDEMLEEYMDAYDAVIVGDGGLDLALEILGEV 786
            DFD TLT+F  NG+ G S H +I +S +L E YH+ T  L + YYPME      VDP L   EK+  M  W   AHE +++  M K  I E V  AN+  R   ++LF LL    +P L+FSAG+ +V++E    +A   +    HVISN MEFD EG   GF GKT HV+NK  +   + P  ++  +  R NV+LLGDSLGDL+MS+G++   +LTIGFLND V E LE Y  A+D VI+GDG +DL   ++  +
Sbjct:  136 DFDMTLTRFLYNGKRGASSHGIIEHSHMLEEAYHEATHNLFSTYYPME------VDPTLTQAEKIPHMVAWWESAHELLIKHRMNKKLIPEMVRGANIGFRERTNELFDLLHASNIPLLIFSAGIGNVIKEALAIKAR--LHPNMHVISNFMEFDAEGYTSGFAGKTIHVYNKQDVVVKDSPVHKS--IADRHNVILLGDSLGDLQMSRGVDVDNILTIGFLNDKVAERLESYKQAFDVVILGDGSVDLVYNLISMI 382          
BLAST of mRNA_A-nodosum_M_contig9351.1.1 vs. uniprot
Match: UPI0001FE3700 (5'-nucleotidase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=UPI0001FE3700)

HSP 1 Score: 206 bits (523), Expect = 2.840e-60
Identity = 115/257 (44.75%), Postives = 155/257 (60.31%), Query Frame = 1
Query:   22 DFDRTLTKFWVNGEMGYSCHMVIANSGLLSEDYHDKTTELRNRYYPMEARDHLGVDPDLPHEEKLEAMKQWVLEAHEAMVETGMTKSTIVEAVSKANLELRPGHDKLFRLLETEKVPFLVFSAGLADVLEEIFRQRAEAPVPSTCHVISNRMEFDDEGKMIGFKGKTYHVFNK--LASPEEPYFRTEEMKGRTNVLLLGDSLGDLKMSKGIETKEVLTIGFLNDNVDEMLEEYMDAYDAVIVGDGGLDLALEILGEV 786
            DFD TLT+F  NG+ G S H +I +S +L E YH+ T  L + YYPME      VDP L   EK+  M  W   AHE +++  M K  I E V  AN+  R   ++LF LL    +P L+FSAG+ +V++E    +A   +    HVISN MEFD EG   GF GKT HV+NK  +   + P  ++  +  R NV+LLGDSLGDL+MS+G++   +LTIGFLND V E LE Y  A+D VI+GDG +DL   ++  +
Sbjct:  173 DFDMTLTRFLYNGKRGASSHGIIEHSHMLEEAYHEATHNLFSTYYPME------VDPTLTQAEKIPHMVAWWESAHELLIKHRMNKKLIPEMVRGANIGFRERTNELFDLLHASNIPLLIFSAGIGNVIKEALAIKAR--LHPNMHVISNFMEFDAEGYTSGFAGKTIHVYNKQDVVVKDSPVHKS--IADRHNVILLGDSLGDLQMSRGVDVDNILTIGFLNDKVAERLESYKQAFDVVILGDGSVDLVYNLISMI 419          
BLAST of mRNA_A-nodosum_M_contig9351.1.1 vs. uniprot
Match: A0A7S0WMC1_9CHLO (5'-nucleotidase n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WMC1_9CHLO)

HSP 1 Score: 201 bits (511), Expect = 6.940e-60
Identity = 108/260 (41.54%), Postives = 162/260 (62.31%), Query Frame = 1
Query:   22 DFDRTLTKFWVNGEMGYSCHMVIANSGLLSEDYHDKTTELRNRYYPMEARDHLGVDPDLPHEEKLEAMKQWVLEAHEAMVETGMTKSTIVEAVSKANLELRPGHDKLFRLLETEKVPFLVFSAGLADVLEEIFRQRAEAPVPSTCHVISNRMEFDDEGKMIGFKGKTYHVFNKLASPEEPYFRTEEMKGRTNVLLLGDSLGDLKMSKGIETKEVLTIGFLNDNVDEMLEEYMDAYDAVIVGDGGLDLALEILGEVTAKAD 801
            DFDRTLT   VNG+ G SCH V+ +   LS++Y ++T EL  +YYP+E   +L +       EK+  M++W  +AHE ++  G+T   I +AV  ANL LRPG   + ++L+   VPFL+FSAG+A+V+ E+ +Q+      ST HV+SN M FD EG   GF     H+FNK  S  +     + ++ R  V+LLGD LGD+ M++GI  + VL +GFLND V+E+L  Y + YD ++  DG +D+ +E+L E+ A+ +
Sbjct:   57 DFDRTLTMCRVNGKTGASCHGVMESLETLSKEYREQTGELFKKYYPIEICHNLTIP------EKIPIMEEWYSQAHELLLREGVTLEHIRDAVMGANLALRPGVCDVIKMLQCNDVPFLIFSAGIANVISEVLKQKFGELKDST-HVVSNWMYFDKEGSHNGFSEPLIHMFNKNESQTKGTDYRKAVEQRQFVILLGDGLGDVTMAEGIPHEVVLKVGFLNDKVEELLPLYKEVYDIIVTNDGSMDVVVELLREIPARVE 309          
BLAST of mRNA_A-nodosum_M_contig9351.1.1 vs. uniprot
Match: A0A821H0I8_9NEOB (5'-nucleotidase n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821H0I8_9NEOB)

HSP 1 Score: 201 bits (511), Expect = 1.120e-59
Identity = 110/259 (42.47%), Postives = 157/259 (60.62%), Query Frame = 1
Query:   22 DFDRTLTKFWVNGEMGYSCHMVIANSGLLSEDYHDKTTELRNRYYPMEARDHLGVDPDLPHEEKLEAMKQWVLEAHEAMVETGMTKSTIVEAVSKANLELRPGHDKLFRLLETEKVPFLVFSAGLADVLEEIFRQRAEAPVPSTCHVISNRMEFDDEGKMIGFKGKTYHVFNKLASPEEPYFRTEEMKGRTNVLLLGDSLGDLKMSKGIETKE-VLTIGFLNDNVDEMLEEYMDAYDAVIVGDGGLDLALEILGEVTAK 795
            DFD TL++F  NGE   +C+ +I NS ++SED   K  +L N YYP+E      +DPD   EEK   M +W  +AH  + E  + K  + + V ++   LR G++K F  L   ++P  +FSAG+ DVLEEI RQ       S   V+SN M+FDD G + GFKG   H +NK  S  +     +++  R+N+LLLGD+LGDL MS+G+ T E +LTIGFLND V E+ ++++ +YD V++ D  LD+   IL  VTAK
Sbjct:   77 DFDMTLSRFKYNGERSPTCYNIIDNSKIISEDCRKKLKDLFNIYYPLE------IDPDRTTEEKFPLMVEWWSKAHTLLCEQRIEKQKLSQVVKESQARLREGYEKFFDSLYHSEIPLFIFSAGIGDVLEEIIRQAGV--YHSNIKVVSNYMDFDDHGVLTGFKGDLIHTYNKNNSVLKDTAYFQQISHRSNILLLGDTLGDLTMSEGVTTVENILTIGFLNDKVKELTDQFLQSYDIVLIADETLDVVNGILNFVTAK 327          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9351.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI70_9PHAE2.570e-9958.465'-nucleotidase n=1 Tax=Ectocarpus sp. CCAP 1310/3... [more]
D8LDF4_ECTSI6.720e-9956.925'-nucleotidase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A835YMP4_9STRA9.320e-7850.005'-nucleotidase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A7S3UTG8_HETAK4.980e-6346.155'-nucleotidase (Fragment) n=1 Tax=Heterosigma aka... [more]
A0A7S3LZW9_9STRA2.280e-6244.535'-nucleotidase n=2 Tax=Spumella elongata TaxID=89... [more]
UPI001401F4925.460e-6143.41cytosolic 5'-nucleotidase 3A isoform X1 n=2 Tax=Am... [more]
A0A0D2U9Z3_CAPO31.120e-6044.755'-nucleotidase n=1 Tax=Capsaspora owczarzaki (str... [more]
UPI0001FE37002.840e-6044.755'-nucleotidase n=1 Tax=Capsaspora owczarzaki (str... [more]
A0A7S0WMC1_9CHLO6.940e-6041.545'-nucleotidase n=1 Tax=Pyramimonas obovata TaxID=... [more]
A0A821H0I8_9NEOB1.120e-5942.475'-nucleotidase n=1 Tax=Ranitomeya imitator TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9351contigA-nodosum_M_contig9351:9296..13818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LDF4
PFAMsUMPH-1
Model size804
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K01081
KEGG ReactionR00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346
KEGG Pathwayko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.1e-99
EggNOG OGsKOG3128@1|root,KOG3128@2759|Eukaryota
EC3.1.3.5
DescriptionBelongs to the pyrimidine 5'-nucleotidase family
Cds size804
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9351.1.1prot_A-nodosum_M_contig9351.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9351 9296..13818 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870420.223443-CDS-A-nodosum_M_contig9351:9295..94091680870420.223443-CDS-A-nodosum_M_contig9351:9295..9409Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9351 9296..9409 -
1680870420.2372-CDS-A-nodosum_M_contig9351:10265..103761680870420.2372-CDS-A-nodosum_M_contig9351:10265..10376Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9351 10266..10376 -
1680870420.2466955-CDS-A-nodosum_M_contig9351:11186..112761680870420.2466955-CDS-A-nodosum_M_contig9351:11186..11276Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9351 11187..11276 -
1680870420.3527882-CDS-A-nodosum_M_contig9351:11744..118331680870420.3527882-CDS-A-nodosum_M_contig9351:11744..11833Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9351 11745..11833 -
1680870420.3675115-CDS-A-nodosum_M_contig9351:12456..126041680870420.3675115-CDS-A-nodosum_M_contig9351:12456..12604Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9351 12457..12604 -
1680870420.3829405-CDS-A-nodosum_M_contig9351:13026..130951680870420.3829405-CDS-A-nodosum_M_contig9351:13026..13095Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9351 13027..13095 -
1680870420.394434-CDS-A-nodosum_M_contig9351:13635..138181680870420.394434-CDS-A-nodosum_M_contig9351:13635..13818Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9351 13636..13818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9351.1.1

>prot_A-nodosum_M_contig9351.1.1 ID=prot_A-nodosum_M_contig9351.1.1|Name=mRNA_A-nodosum_M_contig9351.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=268bp
MYRDFSQDFDRTLTKFWVNGEMGYSCHMVIANSGLLSEDYHDKTTELRNR
YYPMEARDHLGVDPDLPHEEKLEAMKQWVLEAHEAMVETGMTKSTIVEAV
SKANLELRPGHDKLFRLLETEKVPFLVFSAGLADVLEEIFRQRAEAPVPS
TCHVISNRMEFDDEGKMIGFKGKTYHVFNKLASPEEPYFRTEEMKGRTNV
LLLGDSLGDLKMSKGIETKEVLTIGFLNDNVDEMLEEYMDAYDAVIVGDG
GLDLALEILGEVTAKAD*
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mRNA from alignment at A-nodosum_M_contig9351:9296..13818-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9351.1.1 ID=mRNA_A-nodosum_M_contig9351.1.1|Name=mRNA_A-nodosum_M_contig9351.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4523bp|location=Sequence derived from alignment at A-nodosum_M_contig9351:9296..13818- (Ascophyllum nodosum dioecious)
ATGTATCGTGATTTTTCTCAAGACTTCGACCGCACCCTGACCAAGTTCTG GGTGAACGGTGAGATGGGCTACTCCTGCCACATGGTGATCGCGAACTCCG GATTGCTCTCCGAAGACTACCACGACAAGACCACGGAGCTGAGGAACCGC TACTACCCCATGGAGGCGAGAGATCACCTCGGGGTTGGGATAAGCGCCGC CTGGCTTGCGTCTCTCGGGATAGGGCGTCGCCGCGCTGTACCGAGTCCTC ATATTATGCCGTTAGATATCTCCGGAGATGCGGCATATTGATTTTCACGG TTTCGTGCGCGATGGTAGTGTTTTTTCAACAATGCGACAATACGAGAGAA AAAAAATTAAACATGAAAAATAGTGAACAAGTTTTATGTTCCAGGTATAT ACAGTAAAGGTACACAAATCAATCGAAAAAAAACGCCTCCGTCATGCCCA CGGGGAACCCCTTCCCCCCCCAACTTCCTTAGTTTCACGAAGAATGTAGA CTCTAGTGCGTCCTTTAAAAAACAATTGGCAGTGATGAATGGAAAGCGTT TTCGGGTGTGACGACGGTTTACGACGGTTTTCATTCTTATTTTTGCCCCT TAAAAACAGGACGCAAGTGCATGTTTACTTCAACCAGTACATTATTCCAT CGATGATAATTAGTACCGAGGCCCTGGAATTTTGATCCCCCCCCCCCCCC CCCCCCCCCCCCCATCAATCCAGGTGGATCCCGACCTGCCGCACGAGGAA AAATTGGAGGCCATGAAGCAGTGGGTCCTCGAGGCTCACGAGGTGCAGGC GGAGCAAGGGTCCCGCGCGCTTCCCCCCTCGCCCCCCCCCCTCCCCGAGG GTGACATGATATTTTGTTTGTGTTTTTGCTCCTCGTCGCTGCAGGGGGGT GTCGCATTGGCCATGGTTGTGTCACGTGGGGCTTTCTGCGTCTCCTGAGA GTTGGGGCGCCGGCGCCACGCAGGCGTGGTGAAACACCCCCCGCCCCTCC TATGAGAAGCATCGCCCCCTACAAATAATATGAACTCCTCCCAACATGTT TCATATTAATAACAATATAAACTAAAGTTTTATGATAGTAGTCGTGGGAA ATGAGGAGCCACGGCATAACTAAGTGCTCTCTCTCTCTCTCTCTCGTTCT ATTCTAAAATCGAGTATATTTGATGGATCATAGTGTTCCTCGCCCGCTTT TCGTCTCTCATCAGGCCATGGTCGAGACCGGCATGACCAAGAGCACGATC GTTGAAGCCGTGTCGAAAGCGAACTTGGAGCTCAGGCCGGGCCACGACAA GCTGTTCCGATTGCTGGAAACGGAGAAAGTTCCGTTCCTCGTATTCAGCG CAGGCCTTGCCGGTAAGTGGTCTCGGGAGGGGGTGCAGGAGAGACAGGGC TGTTTGTCCTTTTCACTTGCTGCACGGGGGTGGTGGGGGGGGAAAGCACC GCCTCTCTAGAACTCCTGAGAAGCCTGGCGAAGAGCTCCTCCCCTTGGCG AGAAATTCCCGTTGCGTTGCTGCCATCTCTGCGTGCGGAAGATTCTCGAG AGGGCCCGTGTGTGCTTGACGTCAGGACACCTTGCGTTCCATGCTTCGTT TAGTCGAGCGCTATGTTCCCTTTCGAGCTTCCGAAAGGTGGCGATTCCCG TCTTGGAGGCTGTTTTCAGTGGCGCTGACGAGAGCACGGCCGACGTCTCC CCGTTGCCAATGAAGACTCGTGTGTTGTATTCCATCGATTCTGGCGGTCC GCGTTCATTTTTCTGCCTCGATCTTCTCGAGATTCGATCGGAGGAGTATG TGTGTTCCGTTATTCGGAGCATTTCGCGTTCCGTTTGCATCGTCAGGAAT CAACAATGCTTGTTGAGAAAGATACCCCCTATATACAAGGGTCAGATTAT AAGTGATCTTAACCTACCGAGGCATGATGATTTGTGTGTGTGTCTGTATT GCACTCAAAAATCACTCATAAATACTGTACAACAGATGTCTTGGAGGAAA TATTTCGGCAGCGGGCGGAGGCGCCCGTCCCATCCACCTGCCACGTCATA TCCAACAGGATGGAGTTCGACGATGTGAGGCAAGGCGTTTTTGTGCTGCG TTTGTACACCACCCCATAGTATAGCGGCAACTTCCAGCAAGTCGCGTCAT ACCCCAAGCACTCCCATGCCGCTCGTTTCCAAACGCGTCCACTACCTACG GTGGCGTGGGCATTAATAGTAGCACTGTCTTTTGAATGCGAAAAGAAGAA TCTAAACGATGGATAACCTGCGAAGACAGAAAAAGAAAAAAAATGGTGGC GAGCTTCTGTAAAAAACAAAAACAACTAAAAAATGTACCACAGTAGATCT TCATTGAAAACGGTGACGTTAGCCGGGCGACACGAGAAAGTAAGATGGCG CGACAGACCTGGATAGAGGAGGCATGTCTGCCGTTTCTTCACTCTGTCAT ATGGAACCCTCCACCAGGACGATCGCGCTCCTTTTTATGAAAACATGGTC GGGTGCTGCTGCTGCTGCTGCTTTGTATATTGCTGCTGATAGGAGGGGAA AATGATCGGATTTAAGGGGAAAACCTACCACGTTTTTAACAAGCTCGCCT CTCCCGAAGAGCCTTACTTTCGGACCGAAGAGGTACAAGTCATGCCGCTG CAGCGTCTGTCTGGTTTGCGGCAGCGAGAGGCCGTTCCCCTCCTAATAAG CAAACAAACACCGCCTGCACGGTTCCCTGCTCCCTCGCATCGGTGTGTGT CTGTAATTATATGTGTAAAAATCGAGTGCGTGTCTTTATTGAATTGCAAA TTAACCGCGCAGTCCGGGCCTGTCATGCTTATCACACTCTATCTAGCTAC TTGTGTTTGCTCCGCCCAATGGGATATCAATGATGTACTGCAGTGTCAAC GATTAGTTTGGCGGAGGGGGAGGGGAGAAGAATATTTTACGTTCCCTGTT GTGTGACCCCCACTTGCGGGTGTTACTGTTGGATGCGTGGAAAATTCCCC CGTTTTCGCCCCCCCCCCCCCCTCCCATCCCATCATGTCCCGTCTTGTTC CGTTTTATTTCAGTCTTTACTGTCATGGCGACCTCGGTAGACACTATTAA TACTAATACTAGTCATTTGGCAAATAAGAATGGTTGCTTACGCCTTTTCC TTCATATACGTATATATATATTATTTAGTGGGGTGGCTTGGTTGCGCCGA GAGAGAAGAGAGAAAGGGCCCCGCGGTACATCCCACGAGACATCCACGTC TCTAGAAAAACTTCCGTGTACGAATACGCAGCTGTTTACACAAGGGTATC CATTTCGATGGAATACGAAAATAGCCTCCGCCAGGTACTCCATACGTACG AAGAAGGCGTCGCTCGTCTTCCAATCCGTGGTTGTCATTGCGCCGCGTGC TTGCTGCAATCATCTCGTGGTCACGACCGTGTCTCTCGAAAGATGAAGGG CAGGACGAACGTGCTGCTGTTGGGCGACAGCCTCGGCGACCTCAAAATGT CCAAGGGCATCGAGACGAAAGAGGTTCTTACGATTGGATTTCTCAACGAT AACGTGAGGGAGAGATAGTCCAGCGGAACGCTCCATTTTACTCGTCGATA CCGTACGTGCACTCTATTGCCATGCAACTGTAGCTATACACCACAACCTT ATGCAGGGAATGCAGTCCAGCAAAGCACGGCGTCGTTTACTCTTTGTTTT CGTCTTTTTTGTCTTTTTTGTTGTTGTTTTTTAACTCCTGCACTTTAAAC TGTTCATGGCGTTTTTTTTCCGATTTGTTGTTGTTGTTGTTGCTCTTTTT GCCTTTTTTTCTGCTTCCGTTTCACAAAAGTAGTGGAGAAATGATGTTAT TTTCCAAGTATCTAGCTGTCACATTCTGTGAAAAAGTCCGACTCTGGGAG GTGTGTCCGGAAACACAAGGGGTGTAAAATACAATATTAAATAGCACTTG TCTGAAATGTTGCTTTATTTTAAATTTGTCGTAACAGTAGGTTGATGAAA TATTTCATAAATTTCTCGAAAAATCGCTCGCTCGCTGTTTTTGTTTTGTT TTTGTTACTCTTTTTTTTTTTTTTTTTTCATCTCACTTATAGCCGATGGA CCTCATCATCACCATCCTGCCTGTGGTCACAAAGGATCTTCCCATCTCTC CCCGGTTCACGCCTTACAATTTTTTTATCGCGATGCAAGTTCAGCACTCT TACAACTCGTCAACCAATGGTTGAATTTTACTTACTCACGTTCCCACGCT TTCCGTTACGAAAGAAAGAACACAAATCCTACTTTGGTAACAATCGAACT CACGACTTCCGTACTAGCAGATGTGCAGCTTACCTACTAGACCACTCGGG CGACGAGCGGCCTACTCGCTGAAAACAGTCCAAAACATTTTTTCGGCGCT TAAAAAAAGGTGGACGAAATGCTGGAAGAGTACATGGATGCCTACGATGC CGTGATCGTCGGAGACGGTGGCCTCGACTTAGCGCTCGAAATATTGGGCG AGGTCACGGCCAAGGCGGACTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9351:9296..13818-

>mRNA_A-nodosum_M_contig9351.1.1 ID=mRNA_A-nodosum_M_contig9351.1.1|Name=mRNA_A-nodosum_M_contig9351.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at A-nodosum_M_contig9351:9296..13818- (Ascophyllum nodosum dioecious)
ATGTATCGTGATTTTTCTCAAGACTTCGACCGCACCCTGACCAAGTTCTG
GGTGAACGGTGAGATGGGCTACTCCTGCCACATGGTGATCGCGAACTCCG
GATTGCTCTCCGAAGACTACCACGACAAGACCACGGAGCTGAGGAACCGC
TACTACCCCATGGAGGCGAGAGATCACCTCGGGGTGGATCCCGACCTGCC
GCACGAGGAAAAATTGGAGGCCATGAAGCAGTGGGTCCTCGAGGCTCACG
AGGCCATGGTCGAGACCGGCATGACCAAGAGCACGATCGTTGAAGCCGTG
TCGAAAGCGAACTTGGAGCTCAGGCCGGGCCACGACAAGCTGTTCCGATT
GCTGGAAACGGAGAAAGTTCCGTTCCTCGTATTCAGCGCAGGCCTTGCCG
ATGTCTTGGAGGAAATATTTCGGCAGCGGGCGGAGGCGCCCGTCCCATCC
ACCTGCCACGTCATATCCAACAGGATGGAGTTCGACGATGAGGGGAAAAT
GATCGGATTTAAGGGGAAAACCTACCACGTTTTTAACAAGCTCGCCTCTC
CCGAAGAGCCTTACTTTCGGACCGAAGAGATGAAGGGCAGGACGAACGTG
CTGCTGTTGGGCGACAGCCTCGGCGACCTCAAAATGTCCAAGGGCATCGA
GACGAAAGAGGTTCTTACGATTGGATTTCTCAACGATAACGTGGACGAAA
TGCTGGAAGAGTACATGGATGCCTACGATGCCGTGATCGTCGGAGACGGT
GGCCTCGACTTAGCGCTCGAAATATTGGGCGAGGTCACGGCCAAGGCGGA
CTGA
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