mRNA_A-nodosum_M_contig9347.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9347.1.1
Unique NamemRNA_A-nodosum_M_contig9347.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9347.1.1 vs. uniprot
Match: A0A5S6QG42_TRIMR (Uncharacterized protein n=5 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QG42_TRIMR)

HSP 1 Score: 56.6 bits (135), Expect = 3.270e-7
Identity = 31/84 (36.90%), Postives = 44/84 (52.38%), Query Frame = 1
Query:   37 WESDSGATFHMSHTRAGMSAYKKASPG-TNVEIADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLSTVKAVE 285
            W  DSGAT HMS      + +K  SP  T V+IADG++LP+   G +   L +   T K     +  +VPG+   +LS  + VE
Sbjct:  283 WVIDSGATHHMSPNEEYFTKWKAKSPANTQVQIADGSVLPIANAGTVRAKLTRNKGTVKEFSAKNTLFVPGIRTGILSVPQMVE 366          
BLAST of mRNA_A-nodosum_M_contig9347.1.1 vs. uniprot
Match: A0A0P1ACE6_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACE6_PLAHL)

HSP 1 Score: 50.8 bits (120), Expect = 3.200e-5
Identity = 27/83 (32.53%), Postives = 44/83 (53.01%), Query Frame = 1
Query:   37 WESDSGATFHMSHTRAGMSAYKKASPGTNVEIADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLSTVKAVE 285
            W  DSG T H++H     S    ++    V +   N +P++G G+IE+++     T +M+ + DV Y P L  +LLS   AV+
Sbjct:  229 WTIDSGCTRHVTHESQWFSTISASNGSITVGVK--NQIPIEGIGKIELEVTDSKGTQRMLTLHDVLYAPELKFSLLSVPAAVK 309          
BLAST of mRNA_A-nodosum_M_contig9347.1.1 vs. uniprot
Match: A0A4C1TCT1_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1TCT1_EUMVA)

HSP 1 Score: 50.4 bits (119), Expect = 4.540e-5
Identity = 32/95 (33.68%), Postives = 54/95 (56.84%), Query Frame = 1
Query:    1 MVGAARSVRRE-GWESDSGATFHMSHTRAGMSAYKKASPGTNVEIADGNILPVDGFGRIEVDLDQPGRTTKM-VKMDDVAYVPGLSRNLLSTVKA 279
            ++  A SV  +  W  D+GAT H++ TR     Y+  +   +++ A   IL  +G G IE  L +  +  ++ ++++DV YVPG+SRNL S + A
Sbjct:  283 IIDEASSVSTDIDWWVDNGATKHVTRTRKYFVEYESFNDQKSIQAAGKEILNAEGKGTIEF-LSRINQNLEIQIRLEDVWYVPGISRNLFSVLAA 376          
BLAST of mRNA_A-nodosum_M_contig9347.1.1 vs. uniprot
Match: A0A4Y1RMH2_PRUDU (Integrase catalytic domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RMH2_PRUDU)

HSP 1 Score: 50.4 bits (119), Expect = 4.660e-5
Identity = 31/91 (34.07%), Postives = 49/91 (53.85%), Query Frame = 1
Query:    4 VGAARSVRREGWESDSGATFHMSHTRAGMSAYKKASPGTNVEIADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLSTVK 276
            +  + SV    W  DSGAT HM+     + + K ++  T V +A+GN++PV G G + +        +K +K+D V  VP L+ NLLS  +
Sbjct:  340 LSTSTSVMNNTWIIDSGATEHMTCDSRQVPSLKTSTQ-TEVNVANGNVVPVIGEGTVSL--------SKTMKLDTVLVVPSLNYNLLSVAQ 421          
BLAST of mRNA_A-nodosum_M_contig9347.1.1 vs. uniprot
Match: A0A4Y1RB51_PRUDU (Integrase catalytic domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RB51_PRUDU)

HSP 1 Score: 50.4 bits (119), Expect = 4.770e-5
Identity = 31/91 (34.07%), Postives = 49/91 (53.85%), Query Frame = 1
Query:    4 VGAARSVRREGWESDSGATFHMSHTRAGMSAYKKASPGTNVEIADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLSTVK 276
            +  + SV    W  DSGAT HM+     + + K ++  T V +A+GN++PV G G + +        +K +K+D V  VP L+ NLLS  +
Sbjct:  340 LSTSTSVMNNTWIIDSGATEHMTCDSRQVPSLKTSTQ-TEVNVANGNVVPVIGEGTVSL--------SKTMKLDTVLVVPSLNYNLLSVAQ 421          
BLAST of mRNA_A-nodosum_M_contig9347.1.1 vs. uniprot
Match: A0A4Y1R977_PRUDU (Integrase catalytic domain-containing protein n=7 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R977_PRUDU)

HSP 1 Score: 50.4 bits (119), Expect = 4.830e-5
Identity = 31/91 (34.07%), Postives = 49/91 (53.85%), Query Frame = 1
Query:    4 VGAARSVRREGWESDSGATFHMSHTRAGMSAYKKASPGTNVEIADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLSTVK 276
            +  + SV    W  DSGAT HM+     + + K ++  T V +A+GN++PV G G + +        +K +K+D V  VP L+ NLLS  +
Sbjct:  310 LSTSTSVMNNTWIIDSGATEHMTCDSRQVPSLKTSTQ-TEVNVANGNVVPVIGEGTVSL--------SKTMKLDTVLVVPSLNYNLLSVAQ 391          
BLAST of mRNA_A-nodosum_M_contig9347.1.1 vs. uniprot
Match: A0A4C1SBF3_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SBF3_EUMVA)

HSP 1 Score: 50.1 bits (118), Expect = 6.570e-5
Identity = 29/82 (35.37%), Postives = 48/82 (58.54%), Query Frame = 1
Query:   37 WESDSGATFHMSHTRAGMSAYKKASPGTNVEIADGNILPVDGFGRIEVDLDQPGRTTKM-VKMDDVAYVPGLSRNLLSTVKA 279
            W  D+GAT H++ TR     Y+  +   +++ A   IL  +G G IE  L +  +  ++ ++++DV YVPG+SRNL S + A
Sbjct:  269 WWVDNGATKHVTRTRKYFVEYESFNDQKSIQAAGKEILNAEGKGTIEF-LSRINQNLEIQIRLEDVWYVPGISRNLFSVLAA 349          
BLAST of mRNA_A-nodosum_M_contig9347.1.1 vs. uniprot
Match: S8D8C2_9LAMI (Uncharacterized protein n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8D8C2_9LAMI)

HSP 1 Score: 49.7 bits (117), Expect = 8.190e-5
Identity = 28/84 (33.33%), Postives = 42/84 (50.00%), Query Frame = 1
Query:   37 WESDSGATFHMSHTRAGMSAYKKASPGTNVEIADGNILPVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLSTVKAVEQ 288
            W SD+GAT HM+      +  K  +    V I DG  LP+ G G   +      + T  + ++DV Y+P L++NLLS  +   Q
Sbjct:   60 WTSDTGATNHMTGKFTLFNNLKPYTGSNGVIIGDGTTLPITGIGTTALQ-----QNTTSIPLNDVLYIPQLTKNLLSVSQLTRQ 138          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9347.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A5S6QG42_TRIMR3.270e-736.90Uncharacterized protein n=5 Tax=Trichuris muris Ta... [more]
A0A0P1ACE6_PLAHL3.200e-532.53Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A4C1TCT1_EUMVA4.540e-533.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y1RMH2_PRUDU4.660e-534.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y1RB51_PRUDU4.770e-534.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y1R977_PRUDU4.830e-534.07Integrase catalytic domain-containing protein n=7 ... [more]
A0A4C1SBF3_EUMVA6.570e-535.37Retrovirus-related Pol polyprotein from transposon... [more]
S8D8C2_9LAMI8.190e-533.33Uncharacterized protein n=1 Tax=Genlisea aurea Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9347contigA-nodosum_M_contig9347:2036..2323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra85925
PFAMsRetrotran_gag_2,rve,zf-CCHC
Model size288
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.54e-10
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QI8W@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size288
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870417.749354-CDS-A-nodosum_M_contig9347:2035..23231680870417.749354-CDS-A-nodosum_M_contig9347:2035..2323Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9347 2036..2323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9347.1.1prot_A-nodosum_M_contig9347.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9347 2036..2323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9347.1.1

>prot_A-nodosum_M_contig9347.1.1 ID=prot_A-nodosum_M_contig9347.1.1|Name=mRNA_A-nodosum_M_contig9347.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=96bp
MVGAARSVRREGWESDSGATFHMSHTRAGMSAYKKASPGTNVEIADGNIL
PVDGFGRIEVDLDQPGRTTKMVKMDDVAYVPGLSRNLLSTVKAVEQ
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mRNA from alignment at A-nodosum_M_contig9347:2036..2323+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9347.1.1 ID=mRNA_A-nodosum_M_contig9347.1.1|Name=mRNA_A-nodosum_M_contig9347.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at A-nodosum_M_contig9347:2036..2323+ (Ascophyllum nodosum dioecious)
ATGGTGGGAGCGGCTCGTAGCGTTAGGAGGGAAGGATGGGAGTCAGATTC CGGCGCCACATTCCACATGTCGCACACCCGCGCCGGAATGTCTGCCTATA AGAAGGCGTCGCCGGGGACGAACGTTGAGATCGCCGACGGTAATATTCTA CCGGTGGACGGGTTCGGGAGAATCGAGGTTGATCTGGACCAACCGGGACG TACGACCAAGATGGTGAAGATGGACGATGTCGCGTATGTGCCGGGACTCT CCCGAAATCTGCTGTCTACTGTCAAAGCAGTGGAGCAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9347:2036..2323+

>mRNA_A-nodosum_M_contig9347.1.1 ID=mRNA_A-nodosum_M_contig9347.1.1|Name=mRNA_A-nodosum_M_contig9347.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at A-nodosum_M_contig9347:2036..2323+ (Ascophyllum nodosum dioecious)
ATGGTGGGAGCGGCTCGTAGCGTTAGGAGGGAAGGATGGGAGTCAGATTC
CGGCGCCACATTCCACATGTCGCACACCCGCGCCGGAATGTCTGCCTATA
AGAAGGCGTCGCCGGGGACGAACGTTGAGATCGCCGACGGTAATATTCTA
CCGGTGGACGGGTTCGGGAGAATCGAGGTTGATCTGGACCAACCGGGACG
TACGACCAAGATGGTGAAGATGGACGATGTCGCGTATGTGCCGGGACTCT
CCCGAAATCTGCTGTCTACTGTCAAAGCAGTGGAGCAA
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