mRNA_A-nodosum_M_contig934.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig934.1.1
Unique NamemRNA_A-nodosum_M_contig934.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A4Y9XTU1_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9XTU1_9APHY)

HSP 1 Score: 142 bits (359), Expect = 8.640e-36
Identity = 72/174 (41.38%), Postives = 111/174 (63.79%), Query Frame = 1
Query:   64 EPRNRRQAMESPEWDEWRKAEDTEMLGMVESCVYKQVARPTHKLVVGTKMLYKRKIGTDGKVE*FKCRLVAQGFWQVQGVHYTEKYSPTPATASIRILLAMEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGFEQ 585
            +PR  ++AM  P+ + W+ A   E+L   ++ +Y +V RP ++ VVG K ++K K G DG++E +K RLVA+GF QV+ V Y E ++PT   ++IR LLA+ AA D E+   +   AFLN D+DEEIY+  P  F++ P +V RL K +YGL Q  R W  K+  +  ++GF++
Sbjct:  948 DPRTYKEAMSRPDAECWKAACAEELLSFTKAELYDEVERPRNRKVVGCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEDVDYDETFAPTTKFSTIRTLLALAAAHDLEIHQMDVKSAFLNGDLDEEIYMACPPGFEDRPDIVWRLRKALYGLKQASRQWYKKIRAEFESLGFKR 1121          
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A401H317_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H317_9APHY)

HSP 1 Score: 138 bits (347), Expect = 3.410e-34
Identity = 70/172 (40.70%), Postives = 107/172 (62.21%), Query Frame = 1
Query:   64 EPRNRRQAMESPEWDEWRKAEDTEMLGMVESCVYKQVARPTHKLVVGTKMLYKRKIGTDGKVE*FKCRLVAQGFWQVQGVHYTEKYSPTPATASIRILLAMEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGF 579
            EP+   +AM  P+   W+ A   E+   V++ +Y +V RP ++ V+  K ++K K G DG++E +K RLVA+GF QV+G+ + E ++P    AS+R LLA+ A  D E+   +   AFLN D+DEEIY+K+P  F+    +V +LNK +YGL Q GR W  K+  +  A+GF
Sbjct:  866 EPQTYEEAMSRPDAARWKAACAEELHAFVKAELYDEVERPQNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFRRSNSLVWKLNKALYGLKQAGREWYKKIRAEFEALGF 1037          
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A060SSE0_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SSE0_PYCCI)

HSP 1 Score: 138 bits (347), Expect = 3.540e-34
Identity = 73/189 (38.62%), Postives = 114/189 (60.32%), Query Frame = 1
Query:   19 DDGSQMVMQASLDIPEPRNRRQAMESPEWDEWRKAEDTEMLGMVESCVYKQVARPTHKLVVGTKMLYKRKIGTDGKVE*FKCRLVAQGFWQVQGVHYTEKYSPTPATASIRILLAMEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGFEQ 585
            D+G +    AS    EPR  ++AM  P+ ++W+ A   E+L   ++ +Y +V RP ++ VV  K +++ K G DGK++ +K RLVA+GF QV+GV YT+ ++P    ASIR+LLA  A  D E+   +   AFLN D++EEI+++ P  FQ+    V RL K +YGL Q  R W  K+     ++G+ +
Sbjct:  948 DEGDEHAYHASTFSDEPRTYQEAMSRPDAEQWKAACAEELLSFAKAELYDEVERPRNRKVVDCKWVFRIKHGPDGKIQKYKARLVAKGFTQVEGVDYTDTFAPVTKFASIRMLLAFAAKHDLEVHQMDVKSAFLNGDLEEEIFMEAPPGFQQDKAHVWRLQKSLYGLKQASREWYKKVRALFESLGYSR 1136          
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY)

HSP 1 Score: 137 bits (346), Expect = 4.660e-34
Identity = 69/172 (40.12%), Postives = 107/172 (62.21%), Query Frame = 1
Query:   64 EPRNRRQAMESPEWDEWRKAEDTEMLGMVESCVYKQVARPTHKLVVGTKMLYKRKIGTDGKVE*FKCRLVAQGFWQVQGVHYTEKYSPTPATASIRILLAMEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGF 579
            EP+   +AM  P+   W+ A   E+   V++ +Y +V RP ++ V+  K ++K K G DG++E +K RLVA+GF QV+G+ + E ++P    AS+R LLA+ A  D E+   +   AFLN D+DEEIY+K+P  F+    ++ +LNK +YGL Q GR W  K+  +  A+GF
Sbjct:  602 EPQTYEEAMSRPDAARWKAACAEELHAFVKAELYDKVERPRNRKVIDCKWVFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAGREWYKKIRAEFEALGF 773          
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A401G4V0_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G4V0_9APHY)

HSP 1 Score: 137 bits (346), Expect = 4.860e-34
Identity = 70/172 (40.70%), Postives = 106/172 (61.63%), Query Frame = 1
Query:   64 EPRNRRQAMESPEWDEWRKAEDTEMLGMVESCVYKQVARPTHKLVVGTKMLYKRKIGTDGKVE*FKCRLVAQGFWQVQGVHYTEKYSPTPATASIRILLAMEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGF 579
            EP+   +AM  P+   W+ A   E+   V++ +Y +V RP ++ V+  K ++K K G DG++E +K RLVA+GF QV+G+ + E ++P    AS+R LLA+ A  D E+   +   AFLN D+DEEIY+K+P  F     +V +LNK +YGL Q GR W  K+  +  A+GF
Sbjct:  925 EPQTYEEAMSRPDAARWKAACAEELHAFVKAELYDEVERPRNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFHRSNSLVWKLNKALYGLKQAGREWYKKIRAEFEALGF 1096          
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A401GM49_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GM49_9APHY)

HSP 1 Score: 137 bits (344), Expect = 8.840e-34
Identity = 73/187 (39.04%), Postives = 114/187 (60.96%), Query Frame = 1
Query:   19 DDGSQMVMQASLDIPEPRNRRQAMESPEWDEWRKAEDTEMLGMVESCVYKQVARPTHKLVVGTKMLYKRKIGTDGKVE*FKCRLVAQGFWQVQGVHYTEKYSPTPATASIRILLAMEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGF 579
            D+ ++ V +A+ +  E +   +AM  P+   W+ A   E+   V++ +Y +V RP ++ VV  K ++K K G DG++E +K RLVA+GF QV+G+ + E ++P     SIR LLA+ A  D E+   +   AFLN D+DEEIY+ IP  F++   ++ RLNK +YGL Q G  W  K+C +  A+GF
Sbjct:  863 DENAENVRKAA-NWDELQTYEEAMSRPDAARWKAACTEELHAFVKAELYDEVERPRNRKVVDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFTSIRTLLALTAKLDLEIHQMDVKSAFLNGDLDEEIYMNIPPSFRKDNKLIWRLNKALYGLKQAGHKWYKKICAEFEALGF 1048          
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 135 bits (341), Expect = 2.260e-33
Identity = 69/174 (39.66%), Postives = 106/174 (60.92%), Query Frame = 1
Query:   58 IPEPRNRRQAMESPEWDEWRKAEDTEMLGMVESCVYKQVARPTHKLVVGTKMLYKRKIGTDGKVE*FKCRLVAQGFWQVQGVHYTEKYSPTPATASIRILLAMEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGF 579
            + +P +   AM   +  EWRKA + E+    +  V+++V RP  + ++G+K ++K K G DG+VE +K RLVAQGF QV+G+ Y E ++P   + SIR+LLA+ A  D E+   +   AFLN +++EEIY+K+P   +     V RL K +YGL Q  R W  KL  ++  +GF
Sbjct:  992 LGDPLSYVDAMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGF 1165          
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR)

HSP 1 Score: 135 bits (339), Expect = 3.650e-33
Identity = 71/185 (38.38%), Postives = 114/185 (61.62%), Query Frame = 1
Query:   25 GSQMVMQASLDIPEPRNRRQAMESPEWDEWRKAEDTEMLGMVESCVYKQVARPTHKLVVGTKMLYKRKIGTDGKVE*FKCRLVAQGFWQVQGVHYTEKYSPTPATASIRILLAMEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGF 579
            G++    AS+ + +P++  +AM  P+ + W+ A   E+L  V++ +Y +V RP  + VVG K +++ K G DG++E +K R+VA+GF QV+GV YT+ ++P    ASIR LLA+ A  D E+   +   AFLN ++DEEI++  P  FQ    +V +L K +YGL Q  R W  K+  +  ++GF
Sbjct:  269 GAEHAKNASI-LDDPQSYEEAMSRPDAERWKAACAEELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACPPGFQGARNIVWQLRKALYGLKQASREWYKKIRAEFESLGF 452          
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A2R6NZJ8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NZJ8_9APHY)

HSP 1 Score: 132 bits (332), Expect = 3.600e-32
Identity = 72/189 (38.10%), Postives = 111/189 (58.73%), Query Frame = 1
Query:   13 ACDDGSQMVMQASLDIPEPRNRRQAMESPEWDEWRKAEDTEMLGMVESCVYKQVARPTHKLVVGTKMLYKRKIGTDGKVE*FKCRLVAQGFWQVQGVHYTEKYSPTPATASIRILLAMEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGF 579
            A   G +   +ASLD P P   ++AM  P+  +W+ AE  E+   V++ ++ +V +P  + +V  K +Y  K G DG+V  +K RLVA+GF Q++GV Y E ++P     SIR LLA+ A  + E+   +   AFLN D++EEIY++ P  F+   G V +LNK +YGL Q  R W  ++C +   +GF
Sbjct:  952 AGQSGDEHARKASLDEP-PLTHKEAMARPDASQWKLAEIAEIEAFVKAKLFTEVNKPKGRRLVDCKWVYTIKRGPDGEVIKYKARLVARGFTQIEGVDYNETFAPVSKFTSIRSLLALAAVHNLEIHQMDVKSAFLNGDLNEEIYMQCPPGFKAKDGNVWKLNKSLYGLKQASREWYKRVCAEFKTMGF 1139          
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 132 bits (331), Expect = 4.960e-32
Identity = 70/174 (40.23%), Postives = 102/174 (58.62%), Query Frame = 1
Query:   64 EPRNRRQAMESPEWDEWRKAEDTEMLGMVESCVYKQVARPTHKLVVGTKMLYKRKIGTDGKVE*FKCRLVAQGFWQVQGVHYTEKYSPTPATASIRILLAMEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGFEQ 585
            EP    +AM  P+ D W+ A   E+    ++ +Y +V +P  + VVG K ++K K G DG +E +K RLVA+GF QV+G+ YT+ ++P    ASIR +LA+ A  D ++   +   AFLN D+DEEIY+  P  F    G V RL K +YGL Q  R W  K+  +   +GFE+
Sbjct:  988 EPLTYEEAMSRPDADMWKAACAEELFAFAKAELYDEVEKPRGRKVVGCKWVFKIKRGPDGSIEKYKARLVAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPGFDHDAGSVWRLRKSLYGLKQASREWYKKIRSEFEDLGFER 1161          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y9XTU1_9APHY8.640e-3641.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A401H317_9APHY3.410e-3440.70Retrovirus-related Pol polyprotein from transposon... [more]
A0A060SSE0_PYCCI3.540e-3438.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A401H123_9APHY4.660e-3440.12Retrovirus-related Pol polyprotein from transposon... [more]
A0A401G4V0_9APHY4.860e-3440.70Retrovirus-related Pol polyprotein from transposon... [more]
A0A401GM49_9APHY8.840e-3439.04Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C2WN23_AMAMK2.260e-3339.66Integrase catalytic domain-containing protein (Fra... [more]
A0A1C7MSU6_GRIFR3.650e-3338.38Retrovirus-related Pol polyprotein from transposon... [more]
A0A2R6NZJ8_9APHY3.600e-3238.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A1M2VV58_TRAPU4.960e-3240.23Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig934contigA-nodosum_M_contig934:10716..11309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog90675.XP_010501854.1
PFAMsRVT_2,Retrotran_gag_3,Retrotrans_gag,gag_pre-integrs,rve
Model size594
Max annot lvl33090|Viridiplantae
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.41e-11
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37RIF@33090|Viridiplantae
DescriptionCysteine-rich RLK (RECEPTOR-like protein kinase) 8
Cds size231
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870416.9385812-UTR-A-nodosum_M_contig934:10715..110781680870416.9385812-UTR-A-nodosum_M_contig934:10715..11078Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig934 10716..11078 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870416.9540503-CDS-A-nodosum_M_contig934:11078..113091680870416.9540503-CDS-A-nodosum_M_contig934:11078..11309Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig934 11079..11309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig934.1.1prot_A-nodosum_M_contig934.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig934 11079..11309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig934.1.1

>prot_A-nodosum_M_contig934.1.1 ID=prot_A-nodosum_M_contig934.1.1|Name=mRNA_A-nodosum_M_contig934.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=77bp
MEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIY
GLVQVGRCWNNKLCYDMAAIGFEQKRI
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mRNA from alignment at A-nodosum_M_contig934:10716..11309+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig934.1.1 ID=mRNA_A-nodosum_M_contig934.1.1|Name=mRNA_A-nodosum_M_contig934.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=594bp|location=Sequence derived from alignment at A-nodosum_M_contig934:10716..11309+ (Ascophyllum nodosum dioecious)
GAACATGCGTTGGCATGCGACGACGGGAGCCAGATGGTTATGCAGGCGTC GCTGGATATACCGGAACCGAGAAATCGGCGGCAGGCAATGGAATCGCCGG AATGGGACGAATGGCGGAAGGCAGAGGACACTGAGATGCTTGGAATGGTC GAGAGCTGCGTTTATAAGCAGGTGGCTCGGCCGACGCATAAGCTCGTGGT TGGCACAAAAATGCTCTACAAGCGAAAAATCGGAACGGACGGCAAGGTCG AGTAGTTCAAGTGCCGACTTGTCGCTCAAGGGTTCTGGCAAGTGCAAGGT GTACACTACACGGAAAAGTACTCGCCCACGCCAGCGACCGCGTCAATCCG GATTCTTTTGGCGATGGAAGCGGCCAAGGACGGCGAGCTGCGCCATTTCG AAGCGGATCAGGCATTTTTGAATGCGGATATTGACGAAGAAATATACATT AAGATCCCCGAGGAGTTCCAGGAGTTTCCGGGGGTAGTGGGACGGCTGAA CAAGGTCATTTACGGACTCGTACAAGTGGGAAGATGCTGGAACAACAAGC TTTGTTACGACATGGCGGCGATTGGATTCGAGCAAAAGCGGATC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig934:10716..11309+

>mRNA_A-nodosum_M_contig934.1.1 ID=mRNA_A-nodosum_M_contig934.1.1|Name=mRNA_A-nodosum_M_contig934.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=231bp|location=Sequence derived from alignment at A-nodosum_M_contig934:10716..11309+ (Ascophyllum nodosum dioecious)
ATGGAAGCGGCCAAGGACGGCGAGCTGCGCCATTTCGAAGCGGATCAGGC
ATTTTTGAATGCGGATATTGACGAAGAAATATACATTAAGATCCCCGAGG
AGTTCCAGGAGTTTCCGGGGGTAGTGGGACGGCTGAACAAGGTCATTTAC
GGACTCGTACAAGTGGGAAGATGCTGGAACAACAAGCTTTGTTACGACAT
GGCGGCGATTGGATTCGAGCAAAAGCGGATC
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