mRNA_A-nodosum_M_contig934.1.1 (mRNA) Ascophyllum nodosum dioecious
|
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A4Y9XTU1_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9XTU1_9APHY) HSP 1 Score: 142 bits (359), Expect = 8.640e-36 Identity = 72/174 (41.38%), Postives = 111/174 (63.79%), Query Frame = 1
Query: 64 EPRNRRQAMESPEWDEWRKAEDTEMLGMVESCVYKQVARPTHKLVVGTKMLYKRKIGTDGKVE*FKCRLVAQGFWQVQGVHYTEKYSPTPATASIRILLAMEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGFEQ 585
+PR ++AM P+ + W+ A E+L ++ +Y +V RP ++ VVG K ++K K G DG++E +K RLVA+GF QV+ V Y E ++PT ++IR LLA+ AA D E+ + AFLN D+DEEIY+ P F++ P +V RL K +YGL Q R W K+ + ++GF++
Sbjct: 948 DPRTYKEAMSRPDAECWKAACAEELLSFTKAELYDEVERPRNRKVVGCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEDVDYDETFAPTTKFSTIRTLLALAAAHDLEIHQMDVKSAFLNGDLDEEIYMACPPGFEDRPDIVWRLRKALYGLKQASRQWYKKIRAEFESLGFKR 1121
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A401H317_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H317_9APHY) HSP 1 Score: 138 bits (347), Expect = 3.410e-34 Identity = 70/172 (40.70%), Postives = 107/172 (62.21%), Query Frame = 1
Query: 64 EPRNRRQAMESPEWDEWRKAEDTEMLGMVESCVYKQVARPTHKLVVGTKMLYKRKIGTDGKVE*FKCRLVAQGFWQVQGVHYTEKYSPTPATASIRILLAMEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGF 579
EP+ +AM P+ W+ A E+ V++ +Y +V RP ++ V+ K ++K K G DG++E +K RLVA+GF QV+G+ + E ++P AS+R LLA+ A D E+ + AFLN D+DEEIY+K+P F+ +V +LNK +YGL Q GR W K+ + A+GF
Sbjct: 866 EPQTYEEAMSRPDAARWKAACAEELHAFVKAELYDEVERPQNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFRRSNSLVWKLNKALYGLKQAGREWYKKIRAEFEALGF 1037
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A060SSE0_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SSE0_PYCCI) HSP 1 Score: 138 bits (347), Expect = 3.540e-34 Identity = 73/189 (38.62%), Postives = 114/189 (60.32%), Query Frame = 1
Query: 19 DDGSQMVMQASLDIPEPRNRRQAMESPEWDEWRKAEDTEMLGMVESCVYKQVARPTHKLVVGTKMLYKRKIGTDGKVE*FKCRLVAQGFWQVQGVHYTEKYSPTPATASIRILLAMEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGFEQ 585
D+G + AS EPR ++AM P+ ++W+ A E+L ++ +Y +V RP ++ VV K +++ K G DGK++ +K RLVA+GF QV+GV YT+ ++P ASIR+LLA A D E+ + AFLN D++EEI+++ P FQ+ V RL K +YGL Q R W K+ ++G+ +
Sbjct: 948 DEGDEHAYHASTFSDEPRTYQEAMSRPDAEQWKAACAEELLSFAKAELYDEVERPRNRKVVDCKWVFRIKHGPDGKIQKYKARLVAKGFTQVEGVDYTDTFAPVTKFASIRMLLAFAAKHDLEVHQMDVKSAFLNGDLEEEIFMEAPPGFQQDKAHVWRLQKSLYGLKQASREWYKKVRALFESLGYSR 1136
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY) HSP 1 Score: 137 bits (346), Expect = 4.660e-34 Identity = 69/172 (40.12%), Postives = 107/172 (62.21%), Query Frame = 1
Query: 64 EPRNRRQAMESPEWDEWRKAEDTEMLGMVESCVYKQVARPTHKLVVGTKMLYKRKIGTDGKVE*FKCRLVAQGFWQVQGVHYTEKYSPTPATASIRILLAMEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGF 579
EP+ +AM P+ W+ A E+ V++ +Y +V RP ++ V+ K ++K K G DG++E +K RLVA+GF QV+G+ + E ++P AS+R LLA+ A D E+ + AFLN D+DEEIY+K+P F+ ++ +LNK +YGL Q GR W K+ + A+GF
Sbjct: 602 EPQTYEEAMSRPDAARWKAACAEELHAFVKAELYDKVERPRNRKVIDCKWVFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAGREWYKKIRAEFEALGF 773
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A401G4V0_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G4V0_9APHY) HSP 1 Score: 137 bits (346), Expect = 4.860e-34 Identity = 70/172 (40.70%), Postives = 106/172 (61.63%), Query Frame = 1
Query: 64 EPRNRRQAMESPEWDEWRKAEDTEMLGMVESCVYKQVARPTHKLVVGTKMLYKRKIGTDGKVE*FKCRLVAQGFWQVQGVHYTEKYSPTPATASIRILLAMEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGF 579
EP+ +AM P+ W+ A E+ V++ +Y +V RP ++ V+ K ++K K G DG++E +K RLVA+GF QV+G+ + E ++P AS+R LLA+ A D E+ + AFLN D+DEEIY+K+P F +V +LNK +YGL Q GR W K+ + A+GF
Sbjct: 925 EPQTYEEAMSRPDAARWKAACAEELHAFVKAELYDEVERPRNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFHRSNSLVWKLNKALYGLKQAGREWYKKIRAEFEALGF 1096
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A401GM49_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GM49_9APHY) HSP 1 Score: 137 bits (344), Expect = 8.840e-34 Identity = 73/187 (39.04%), Postives = 114/187 (60.96%), Query Frame = 1
Query: 19 DDGSQMVMQASLDIPEPRNRRQAMESPEWDEWRKAEDTEMLGMVESCVYKQVARPTHKLVVGTKMLYKRKIGTDGKVE*FKCRLVAQGFWQVQGVHYTEKYSPTPATASIRILLAMEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGF 579
D+ ++ V +A+ + E + +AM P+ W+ A E+ V++ +Y +V RP ++ VV K ++K K G DG++E +K RLVA+GF QV+G+ + E ++P SIR LLA+ A D E+ + AFLN D+DEEIY+ IP F++ ++ RLNK +YGL Q G W K+C + A+GF
Sbjct: 863 DENAENVRKAA-NWDELQTYEEAMSRPDAARWKAACTEELHAFVKAELYDEVERPRNRKVVDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFTSIRTLLALTAKLDLEIHQMDVKSAFLNGDLDEEIYMNIPPSFRKDNKLIWRLNKALYGLKQAGHKWYKKICAEFEALGF 1048
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 135 bits (341), Expect = 2.260e-33 Identity = 69/174 (39.66%), Postives = 106/174 (60.92%), Query Frame = 1
Query: 58 IPEPRNRRQAMESPEWDEWRKAEDTEMLGMVESCVYKQVARPTHKLVVGTKMLYKRKIGTDGKVE*FKCRLVAQGFWQVQGVHYTEKYSPTPATASIRILLAMEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGF 579
+ +P + AM + EWRKA + E+ + V+++V RP + ++G+K ++K K G DG+VE +K RLVAQGF QV+G+ Y E ++P + SIR+LLA+ A D E+ + AFLN +++EEIY+K+P + V RL K +YGL Q R W KL ++ +GF
Sbjct: 992 LGDPLSYVDAMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGF 1165
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR) HSP 1 Score: 135 bits (339), Expect = 3.650e-33 Identity = 71/185 (38.38%), Postives = 114/185 (61.62%), Query Frame = 1
Query: 25 GSQMVMQASLDIPEPRNRRQAMESPEWDEWRKAEDTEMLGMVESCVYKQVARPTHKLVVGTKMLYKRKIGTDGKVE*FKCRLVAQGFWQVQGVHYTEKYSPTPATASIRILLAMEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGF 579
G++ AS+ + +P++ +AM P+ + W+ A E+L V++ +Y +V RP + VVG K +++ K G DG++E +K R+VA+GF QV+GV YT+ ++P ASIR LLA+ A D E+ + AFLN ++DEEI++ P FQ +V +L K +YGL Q R W K+ + ++GF
Sbjct: 269 GAEHAKNASI-LDDPQSYEEAMSRPDAERWKAACAEELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACPPGFQGARNIVWQLRKALYGLKQASREWYKKIRAEFESLGF 452
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A2R6NZJ8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NZJ8_9APHY) HSP 1 Score: 132 bits (332), Expect = 3.600e-32 Identity = 72/189 (38.10%), Postives = 111/189 (58.73%), Query Frame = 1
Query: 13 ACDDGSQMVMQASLDIPEPRNRRQAMESPEWDEWRKAEDTEMLGMVESCVYKQVARPTHKLVVGTKMLYKRKIGTDGKVE*FKCRLVAQGFWQVQGVHYTEKYSPTPATASIRILLAMEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGF 579
A G + +ASLD P P ++AM P+ +W+ AE E+ V++ ++ +V +P + +V K +Y K G DG+V +K RLVA+GF Q++GV Y E ++P SIR LLA+ A + E+ + AFLN D++EEIY++ P F+ G V +LNK +YGL Q R W ++C + +GF
Sbjct: 952 AGQSGDEHARKASLDEP-PLTHKEAMARPDASQWKLAEIAEIEAFVKAKLFTEVNKPKGRRLVDCKWVYTIKRGPDGEVIKYKARLVARGFTQIEGVDYNETFAPVSKFTSIRSLLALAAVHNLEIHQMDVKSAFLNGDLNEEIYMQCPPGFKAKDGNVWKLNKSLYGLKQASREWYKRVCAEFKTMGF 1139
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU) HSP 1 Score: 132 bits (331), Expect = 4.960e-32 Identity = 70/174 (40.23%), Postives = 102/174 (58.62%), Query Frame = 1
Query: 64 EPRNRRQAMESPEWDEWRKAEDTEMLGMVESCVYKQVARPTHKLVVGTKMLYKRKIGTDGKVE*FKCRLVAQGFWQVQGVHYTEKYSPTPATASIRILLAMEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYGLVQVGRCWNNKLCYDMAAIGFEQ 585
EP +AM P+ D W+ A E+ ++ +Y +V +P + VVG K ++K K G DG +E +K RLVA+GF QV+G+ YT+ ++P ASIR +LA+ A D ++ + AFLN D+DEEIY+ P F G V RL K +YGL Q R W K+ + +GFE+
Sbjct: 988 EPLTYEEAMSRPDADMWKAACAEELFAFAKAELYDEVEKPRGRKVVGCKWVFKIKRGPDGSIEKYKARLVAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPGFDHDAGSVWRLRKSLYGLKQASREWYKKIRSEFEDLGFER 1161 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig934.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig934.1.1 >prot_A-nodosum_M_contig934.1.1 ID=prot_A-nodosum_M_contig934.1.1|Name=mRNA_A-nodosum_M_contig934.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=77bp MEAAKDGELRHFEADQAFLNADIDEEIYIKIPEEFQEFPGVVGRLNKVIYback to top mRNA from alignment at A-nodosum_M_contig934:10716..11309+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig934.1.1 ID=mRNA_A-nodosum_M_contig934.1.1|Name=mRNA_A-nodosum_M_contig934.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=594bp|location=Sequence derived from alignment at A-nodosum_M_contig934:10716..11309+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig934:10716..11309+ >mRNA_A-nodosum_M_contig934.1.1 ID=mRNA_A-nodosum_M_contig934.1.1|Name=mRNA_A-nodosum_M_contig934.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=231bp|location=Sequence derived from alignment at A-nodosum_M_contig934:10716..11309+ (Ascophyllum nodosum dioecious)back to top |