mRNA_A-nodosum_M_contig932.22.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig932.22.1
Unique NamemRNA_A-nodosum_M_contig932.22.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig932.22.1 vs. uniprot
Match: A0A6H5L144_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L144_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.000e-12
Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 1 
Query:    1 IETTMRTRRLLWSGALLRIGDYRLPKRVMSGELENPGKRGPGGEEKEWTDCVAEDLRRLFGIT-----GDWNTAALDPGAWYSTVREGGCRFMAAWVK 279
            IE T+R RRL ++G ++R+GD RLPKR++ G +   G    GG+E +W   + EDL   FG+      G W  +A D  AWY  + +G   FM  W +
Sbjct:  787 IEATVRKRRLCFAGFVMRMGDNRLPKRMLLGAMAG-GTGYRGGQESDWVYRLGEDLV-AFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHR 882
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BLAST of mRNA_A-nodosum_M_contig932.22.1 vs. uniprot
Match: A0A5J4N6R7_9TREM (Uncharacterized protein n=1 Tax=Paragonimus westermani TaxID=34504 RepID=A0A5J4N6R7_9TREM)

HSP 1 Score: 58.9 bits (141), Expect = 1.070e-8
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:    1 IETTMRTRRLLWSGALLRIGDYRLPKRVMSGELENPGKRGPGGEEKEWTDCVAEDLRRLFGITGDWNTAALDPGAWYSTVREG 249
            +E  +   +L W G + R+GD R+PK++M G++++ G+R PGG+++ + D V   L R       W   AL+  AW +TVR G
Sbjct:    9 MEAMLMLNQLRWLGHVRRLGDDRIPKQLMYGQVKS-GRRNPGGQKRRYQDVVQVSLSRHNIEFRCWEDLALNRTAWRNTVRAG 90
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BLAST of mRNA_A-nodosum_M_contig932.22.1 vs. uniprot
Match: A0A5J4NEW0_9TREM (C2H2-type domain-containing protein n=1 Tax=Paragonimus westermani TaxID=34504 RepID=A0A5J4NEW0_9TREM)

HSP 1 Score: 59.3 bits (142), Expect = 3.360e-8
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:    1 IETTMRTRRLLWSGALLRIGDYRLPKRVMSGELENPGKRGPGGEEKEWTDCVAEDLRRLFGITGDWNTAALDPGAWYSTVREG 249
            +E  +   +L W G + R+GD R+PK+++ G++++ GKR PGG+++ + D V   L R       W   AL+  AW +TVR G
Sbjct:  669 MEAMLMLNQLRWLGHVRRMGDDRIPKQLLYGQVKS-GKRNPGGQKRRYQDVVQVSLSRCNIDFRCWEDLALNRTAWRNTVRAG 750
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BLAST of mRNA_A-nodosum_M_contig932.22.1 vs. uniprot
Match: A0A5J4N4M3_9TREM (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Paragonimus westermani TaxID=34504 RepID=A0A5J4N4M3_9TREM)

HSP 1 Score: 59.3 bits (142), Expect = 3.410e-8
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:    1 IETTMRTRRLLWSGALLRIGDYRLPKRVMSGELENPGKRGPGGEEKEWTDCVAEDLRRLFGITGDWNTAALDPGAWYSTVREG 249
            +E  +   +L W G + R+GD R+PK+++ G++++ GKR PGG+++ + D V   L R       W   AL+  AW +TVR G
Sbjct: 1050 MEAMLMLNQLRWLGHVRRMGDDRIPKQLLYGQVKS-GKRNPGGQKRRYQDVVQVSLSRCNIDFRCWEDLALNRTAWRNTVRAG 1131
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BLAST of mRNA_A-nodosum_M_contig932.22.1 vs. uniprot
Match: A0A5J4NBJ4_9TREM (Uncharacterized protein n=1 Tax=Paragonimus westermani TaxID=34504 RepID=A0A5J4NBJ4_9TREM)

HSP 1 Score: 59.3 bits (142), Expect = 3.410e-8
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:    1 IETTMRTRRLLWSGALLRIGDYRLPKRVMSGELENPGKRGPGGEEKEWTDCVAEDLRRLFGITGDWNTAALDPGAWYSTVREG 249
            +E  +   +L W G + R+GD R+PK+++ G++++ GKR PGG+++ + D V   L R       W   AL+  AW +TVR G
Sbjct: 1093 MEAMLMLNQLRWLGHVRRMGDDRIPKQLLYGQVKS-GKRNPGGQKRRYQDVVQVSLSRCNIDFRCWEDLALNRTAWRNTVRAG 1174
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BLAST of mRNA_A-nodosum_M_contig932.22.1 vs. uniprot
Match: A0A0L8G1T5_OCTBM (Uncharacterized protein n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8G1T5_OCTBM)

HSP 1 Score: 48.9 bits (115), Expect = 2.140e-5
Identity = 25/83 (30.12%), Postives = 40/83 (48.19%), Query Frame = 1 
Query:    1 IETTMRTRRLLWSGALLRIGDYRLPKRVMSGELENPGKRGPGGEEKEWTDCVAEDLRRLFGITGDWNTAALDPGAWYSTVREG 249
            I T +   +L W+G +  + +YR+P +V+ GEL+  GK   GG+   + D +   L+        W   ALD   W + V  G
Sbjct:   16 IPTILMRTQLHWAGHVAHMPNYRIPMKVLFGELQQ-GKHSHGGQRNGFKDSLKVSLKAFNIDQSSWEQTALDRTKWRAAVHNG 97
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BLAST of mRNA_A-nodosum_M_contig932.22.1 vs. uniprot
Match: UPI000F66AD9C (uncharacterized protein LOC113809286 n=1 Tax=Penaeus vannamei TaxID=6689 RepID=UPI000F66AD9C)

HSP 1 Score: 49.3 bits (116), Expect = 4.730e-5
Identity = 23/61 (37.70%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:   28 LLWSGALLRIGDYRLPKRVMSGELENPGKRGPGGEEKEWTDCVAEDLRRLFGITGDWNTAA 210
            L W+G ++R+ D+RLPKR++SGEL+  GKR  GG+++ + D +   L+        W   A
Sbjct:  110 LRWAGHVVRMPDHRLPKRLLSGELQQ-GKRSNGGQKRRFKDTLIASLKAFDINHNTWEQTA 169
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig932.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L144_9PHAE4.000e-1238.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5J4N6R7_9TREM1.070e-836.14Uncharacterized protein n=1 Tax=Paragonimus wester... [more]
A0A5J4NEW0_9TREM3.360e-836.14C2H2-type domain-containing protein n=1 Tax=Parago... [more]
A0A5J4N4M3_9TREM3.410e-836.14Reverse transcriptase domain-containing protein (F... [more]
A0A5J4NBJ4_9TREM3.410e-836.14Uncharacterized protein n=1 Tax=Paragonimus wester... [more]
A0A0L8G1T5_OCTBM2.140e-530.12Uncharacterized protein n=1 Tax=Octopus bimaculoid... [more]
UPI000F66AD9C4.730e-537.70uncharacterized protein LOC113809286 n=1 Tax=Penae... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig932contigA-nodosum_M_contig932:206880..207161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog6500.XP_005092354.1
PFAMsRVT_1
Model size282
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.27e-10
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria
DescriptionRibonuclease H protein
Cds size270
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870415.4862-CDS-A-nodosum_M_contig932:206879..2071491680870415.4862-CDS-A-nodosum_M_contig932:206879..207149Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig932 206880..207149 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870415.497671-UTR-A-nodosum_M_contig932:207149..2071611680870415.497671-UTR-A-nodosum_M_contig932:207149..207161Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig932 207150..207161 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig932.22.1prot_A-nodosum_M_contig932.22.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig932 206880..207149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig932.22.1

>prot_A-nodosum_M_contig932.22.1 ID=prot_A-nodosum_M_contig932.22.1|Name=mRNA_A-nodosum_M_contig932.22.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=90bp
MRTRRLLWSGALLRIGDYRLPKRVMSGELENPGKRGPGGEEKEWTDCVAE
DLRRLFGITGDWNTAALDPGAWYSTVREGGCRFMAAWVK*
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mRNA from alignment at A-nodosum_M_contig932:206880..207161-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig932.22.1 ID=mRNA_A-nodosum_M_contig932.22.1|Name=mRNA_A-nodosum_M_contig932.22.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=282bp|location=Sequence derived from alignment at A-nodosum_M_contig932:206880..207161- (Ascophyllum nodosum dioecious)
ATTGAAACAACCATGCGCACGAGGAGGTTGTTGTGGTCAGGGGCGCTGCT
CCGCATAGGGGACTACAGATTACCCAAGAGGGTTATGTCGGGAGAGTTGG
AGAACCCAGGGAAACGTGGGCCGGGAGGGGAGGAGAAAGAATGGACGGAC
TGCGTGGCAGAGGATCTTCGTCGGCTATTTGGCATCACGGGGGACTGGAA
CACTGCCGCACTTGACCCTGGGGCCTGGTATAGCACAGTACGTGAAGGGG
GCTGTAGATTCATGGCCGCGTGGGTGAAGTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig932:206880..207161-

>mRNA_A-nodosum_M_contig932.22.1 ID=mRNA_A-nodosum_M_contig932.22.1|Name=mRNA_A-nodosum_M_contig932.22.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at A-nodosum_M_contig932:206880..207161- (Ascophyllum nodosum dioecious)
ATGCGCACGAGGAGGTTGTTGTGGTCAGGGGCGCTGCTCCGCATAGGGGA
CTACAGATTACCCAAGAGGGTTATGTCGGGAGAGTTGGAGAACCCAGGGA
AACGTGGGCCGGGAGGGGAGGAGAAAGAATGGACGGACTGCGTGGCAGAG
GATCTTCGTCGGCTATTTGGCATCACGGGGGACTGGAACACTGCCGCACT
TGACCCTGGGGCCTGGTATAGCACAGTACGTGAAGGGGGCTGTAGATTCA
TGGCCGCGTGGGTGAAGTAA
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