mRNA_A-nodosum_M_contig931.3.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig931.3.1 vs. uniprot
Match: A0A2B4R8Q4_STYPI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4R8Q4_STYPI) HSP 1 Score: 131 bits (329), Expect = 8.490e-32 Identity = 70/173 (40.46%), Postives = 98/173 (56.65%), Query Frame = 1
Query: 1 DITGPFDTTSLGGHRYAMLCVDDFTRFKFIRFLKHKIGATKELRELVAEHIAPLGIKIGTVRTDGGGEF-EGEFQSLLKELGI*RETTPPHTPQYNGVVERALGLLQDKTVALLRGMTAGKSDRLWAEAMNYACEMSNRYTTTSLKPGVSPYELWVRHRPTFGHLIPFGAVGY 516
D+ GP T S+GG +Y + +DD++R + F+KHK ++ E A +G IGT+RTD GGE+ E ++ LK GI E T PH+PQ NGV ER L + +++ A SD WAEA++ A + NR TT+LK +PYE W R +P GHL FG + Y
Sbjct: 206 DVCGPMHTPSIGGAKYFVTFIDDYSRCCAVHFMKHKSEVLEKFVEFEASVTNDVGKAIGTLRTDNGGEYLSTELRNYLKVKGIRHELTVPHSPQQNGVAERMNRTLVESARSMIAH--AALSDIFWAEAVSTAAYVRNRLPTTALKENETPYERWYRRKPDVGHLRVFGCMAY 376
BLAST of mRNA_A-nodosum_M_contig931.3.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 131 bits (329), Expect = 8.760e-32 Identity = 82/204 (40.20%), Postives = 110/204 (53.92%), Query Frame = 1
Query: 1 DITGPFDTTSLGGHRYAMLCVDDFTRFKFIRFLKHKIGATKELRELVAEHIA---PLGIKIGTVRTDGGGEF-EGEFQSLLKELGI*RETTPPHTPQYNGVVERALGLLQDKTVA-------LLRGMTAGKSDRLWAEAMNYACEMSNRYTTTSLKPGVSPYELWVRHRPTFGHLIPFGAVGYLRRPKPEHNLAPRGAKCIMLG 579
D+ G D S+GG Y M+ DDFTR ++ FLKHK A R +A A P ++I VR+D GGEF GEF S+ EL I +E TP ++PQYNGV ER LGL+++ +A L + K+D+LWAEAM++ACE N ++ SPYE+W P PF Y R +P L P+G C +G
Sbjct: 730 DLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVG 929
BLAST of mRNA_A-nodosum_M_contig931.3.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 131 bits (329), Expect = 8.830e-32 Identity = 82/204 (40.20%), Postives = 110/204 (53.92%), Query Frame = 1
Query: 1 DITGPFDTTSLGGHRYAMLCVDDFTRFKFIRFLKHKIGATKELRELVAEHIA---PLGIKIGTVRTDGGGEF-EGEFQSLLKELGI*RETTPPHTPQYNGVVERALGLLQDKTVA-------LLRGMTAGKSDRLWAEAMNYACEMSNRYTTTSLKPGVSPYELWVRHRPTFGHLIPFGAVGYLRRPKPEHNLAPRGAKCIMLG 579
D+ G D S+GG Y M+ DDFTR ++ FLKHK A R +A A P ++I VR+D GGEF GEF S+ EL I +E TP ++PQYNGV ER LGL+++ +A L + K+D+LWAEAM++ACE N ++ SPYE+W P PF Y R +P L P+G C +G
Sbjct: 437 DLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVG 636
BLAST of mRNA_A-nodosum_M_contig931.3.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE) HSP 1 Score: 126 bits (317), Expect = 1.200e-31 Identity = 77/204 (37.75%), Postives = 111/204 (54.41%), Query Frame = 1
Query: 1 DITGPFDTTSLGGHRYAMLCVDDFTRFKFIRFLKHKIGATKELRELVAEHIA---PLGIKIGTVRTDGGGEF-EGEFQSLLKELGI*RETTPPHTPQYNGVVERALGLLQDKTVA-------LLRGMTAGKSDRLWAEAMNYACEMSNRYTTTSLKPGVSPYELWVRHRPTFGHLIPFGAVGYLRRPKPEHNLAPRGAKCIMLG 579
D+ G D S+GG Y ++ DDFTR ++ FL++K A R +A A P ++I VR+D GG+F G+F S+ EL I +E TP ++PQYNGV ER LGL+++ +A L + K+D+LWAEAM++ACE N ++ +SPYE+W P PF Y R +P L P+G C +G
Sbjct: 98 DLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEI--VRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQRPS-KLLPKGESCFYVG 297
BLAST of mRNA_A-nodosum_M_contig931.3.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE) HSP 1 Score: 129 bits (325), Expect = 1.340e-31 Identity = 80/204 (39.22%), Postives = 112/204 (54.90%), Query Frame = 1
Query: 1 DITGPFDTTSLGGHRYAMLCVDDFTRFKFIRFLKHKIGATKELRELVAE---HIAPLGIKIGTVRTDGGGEF-EGEFQSLLKELGI*RETTPPHTPQYNGVVERALGLLQDKTVA-------LLRGMTAGKSDRLWAEAMNYACEMSNRYTTTSLKPGVSPYELWVRHRPTFGHLIPFGAVGYLRRPKPEHNLAPRGAKCIMLG 579
D+ G D S+GG Y M+ DDFTR ++ FLK++ A R +A +I P ++I VR+D GGEF GEF S+ EL I +E TP ++PQYNGV ER LGL+++ +A L + K+D+LWAEAM++ACE N ++ +SPYE+W P PF Y R +P L P+G C +G
Sbjct: 318 DLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 517
BLAST of mRNA_A-nodosum_M_contig931.3.1 vs. uniprot
Match: A0A2B4R7Q8_STYPI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4R7Q8_STYPI) HSP 1 Score: 129 bits (323), Expect = 4.820e-31 Identity = 71/180 (39.44%), Postives = 98/180 (54.44%), Query Frame = 1
Query: 1 DITGPFDTTSLGGHRYAMLCVDDFTRFKFIRFLKHKIGATKELRELVAEHIAPLGIKIGTVRTDGGGEF-EGEFQSLLKELGI*RETTPPHTPQYNGVVERALGLLQDKTVALLRGMTAGKSDRLWAEAMNYACEMSNRYTTTSLKPGVSPYELWVRHRPTFGHLIPFGAVGYLRRPKPE 537
D+ GP T S+GG +Y + +DD++R + F+KHK ++ E A +G IGT+RTD GGE+ E ++ LK GI E T PH+PQ NGV ER L + +++ A SD WAEA+ A + NR TT+LK +PYE W +P GHL FG + Y P E
Sbjct: 197 DVCGPMHTPSIGGAKYFVTFIDDYSRCCAVHFMKHKSEVLEKFVEFEASVTNDVGKAIGTLRTDNGGEYLSTELRNYLKVKGIRHELTVPHSPQQNGVAERMNRTLVESARSMIAH--AALSDIFWAEAVFTAAYVRNRLPTTALKENETPYERWYGKKPDVGHLRVFGCMAYAHVPGSE 374
BLAST of mRNA_A-nodosum_M_contig931.3.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 129 bits (323), Expect = 5.570e-31 Identity = 81/204 (39.71%), Postives = 111/204 (54.41%), Query Frame = 1
Query: 1 DITGPFDTTSLGGHRYAMLCVDDFTRFKFIRFLKHKIGATKELRELVAEHIA---PLGIKIGTVRTDGGGEF-EGEFQSLLKELGI*RETTPPHTPQYNGVVERALGLLQDKTVA-------LLRGMTAGKSDRLWAEAMNYACEMSNRYTTTSLKPGVSPYELWVRHRPTFGHLIPFGAVGYLRRPKPEHNLAPRGAKCIMLG 579
D+ G D S+GG Y M+ DDFTR +I FL++K A R +A A P ++I VR+D GGEF GEF S+ EL I +E TP ++PQYNGV ER LGL+++ +A L + K+D+LWAEAM++ACE N ++ +SPYE+W P PF Y R +P L P+G C +G
Sbjct: 251 DLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRANGVPSFVEI--VRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 450
BLAST of mRNA_A-nodosum_M_contig931.3.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE) HSP 1 Score: 128 bits (322), Expect = 7.730e-31 Identity = 79/202 (39.11%), Postives = 111/202 (54.95%), Query Frame = 1
Query: 1 DITGPFDTTSLGGHRYAMLCVDDFTRFKFIRFLKHKIGATKELRELVAEHIA---PLGIKIGTVRTDGGGEF-EGEFQSLLKELGI*RETTPPHTPQYNGVVERALGLLQDKTVAL-LRGMT----AGKSDRLWAEAMNYACEMSNRYTTTSLKPGVSPYELWVRHRPTFGHLIPFGAVGYLRRPKPEHNLAPRGAKCIMLG 579
D++G SLGG Y ++ DD+TR+ + FLKHK A + +AE+ A P + + VR+D GGEF EGEF + ++ I +E TP H+P+YNGV ERALGL++D +A ++ T A LWAEA+ ++C N +TTS SPYE+W H P G PF + + K H P+ KC LG
Sbjct: 739 DLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPA-VYKVKRTHKSEPKAQKCFYLG 937
BLAST of mRNA_A-nodosum_M_contig931.3.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 128 bits (322), Expect = 7.770e-31 Identity = 79/202 (39.11%), Postives = 111/202 (54.95%), Query Frame = 1
Query: 1 DITGPFDTTSLGGHRYAMLCVDDFTRFKFIRFLKHKIGATKELRELVAEHIA---PLGIKIGTVRTDGGGEF-EGEFQSLLKELGI*RETTPPHTPQYNGVVERALGLLQDKTVAL-LRGMT----AGKSDRLWAEAMNYACEMSNRYTTTSLKPGVSPYELWVRHRPTFGHLIPFGAVGYLRRPKPEHNLAPRGAKCIMLG 579
D++G SLGG Y ++ DD+TR+ + FLKHK A + +AE+ A P + + VR+D GGEF EGEF + ++ I +E TP H+P+YNGV ERALGL++D +A ++ T A LWAEA+ ++C N +TTS SPYE+W H P G PF + + K H P+ KC LG
Sbjct: 574 DLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPA-VYKVKRTHKSEPKAQKCFYLG 772
BLAST of mRNA_A-nodosum_M_contig931.3.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 128 bits (322), Expect = 7.800e-31 Identity = 79/202 (39.11%), Postives = 111/202 (54.95%), Query Frame = 1
Query: 1 DITGPFDTTSLGGHRYAMLCVDDFTRFKFIRFLKHKIGATKELRELVAEHIA---PLGIKIGTVRTDGGGEF-EGEFQSLLKELGI*RETTPPHTPQYNGVVERALGLLQDKTVAL-LRGMT----AGKSDRLWAEAMNYACEMSNRYTTTSLKPGVSPYELWVRHRPTFGHLIPFGAVGYLRRPKPEHNLAPRGAKCIMLG 579
D++G SLGG Y ++ DD+TR+ + FLKHK A + +AE+ A P + + VR+D GGEF EGEF + ++ I +E TP H+P+YNGV ERALGL++D +A ++ T A LWAEA+ ++C N +TTS SPYE+W H P G PF + + K H P+ KC LG
Sbjct: 587 DLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPA-VYKVKRTHKSEPKAQKCFYLG 785 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig931.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig931.3.1 >prot_A-nodosum_M_contig931.3.1 ID=prot_A-nodosum_M_contig931.3.1|Name=mRNA_A-nodosum_M_contig931.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=82bp MTAGKSDRLWAEAMNYACEMSNRYTTTSLKPGVSPYELWVRHRPTFGHLIback to top mRNA from alignment at A-nodosum_M_contig931:185997..186587- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig931.3.1 ID=mRNA_A-nodosum_M_contig931.3.1|Name=mRNA_A-nodosum_M_contig931.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=591bp|location=Sequence derived from alignment at A-nodosum_M_contig931:185997..186587- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig931:185997..186587- >mRNA_A-nodosum_M_contig931.3.1 ID=mRNA_A-nodosum_M_contig931.3.1|Name=mRNA_A-nodosum_M_contig931.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at A-nodosum_M_contig931:185997..186587- (Ascophyllum nodosum dioecious)back to top |