mRNA_A-nodosum_M_contig931.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig931.2.1
Unique NamemRNA_A-nodosum_M_contig931.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig931.2.1 vs. uniprot
Match: A0A8H7F2H5_AGABI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7F2H5_AGABI)

HSP 1 Score: 108 bits (269), Expect = 1.680e-26
Identity = 54/125 (43.20%), Postives = 75/125 (60.00%), Query Frame = 1 
Query:    1 IKDLGKAELYLGYHITRDRDAGRLKFDQHHYVRTMASKFSVEKTS--TTPAAAGAKLLFKDDAPQTEAETE*MRSTPYREAVGALMWAATMTRPDVAYAAHQLGRFNDNPRPAHWRAANRALQYL 369
            ++DLG   L LG  +T+D     +   Q HY++ +  +F+++  +  +TP A G++L   D  P  E + E M+S PY  AVGAL + ATMTRPD+AYA   LGRFN NP PAHW A     +YL
Sbjct:   14 LRDLGSTTLLLGIQVTQDSSTHSISLSQEHYIKELLERFNMDDANPLSTPLAPGSEL--SDIIPSLEDQAE-MKSVPYLNAVGALQYLATMTRPDIAYAVSYLGRFNSNPAPAHWLAVKHLFRYL 135
[Close]
BLAST of mRNA_A-nodosum_M_contig931.2.1 vs. uniprot
Match: A0A0A9Z147_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z147_LYGHE)

HSP 1 Score: 112 bits (280), Expect = 5.510e-26
Identity = 56/129 (43.41%), Postives = 79/129 (61.24%), Query Frame = 1 
Query:    7 DLGKAELYLGYHITRDRDAGRLKFDQHHYVRTMASKFSVEKTS--TTPAAAGAKLLFKDDAPQTEAETE*MRSTPYREAVGALMWAATMTRPDVAYAAHQLGRFNDNPRPAHWRAANRALQYLWRAKDY 387
            DLG+A+  LG+ +TRDR A R+   Q HY+  M  +F ++  +  TTP +   K   K+ APQT  E E MR  PY+EA+G+L++AA ++RPD+A+A   L RFN+NP  AHW    R  +YL     Y
Sbjct:   89 DLGEAKSVLGFQLTRDRQAKRIWISQQHYIEEMLKRFHMDAANPVTTPMSNSEKFS-KNQAPQTADERERMRKIPYQEAIGSLLFAAQVSRPDIAFAISSLSRFNNNPGMAHWTGVKRVFRYLRGTSSY 216
[Close]
BLAST of mRNA_A-nodosum_M_contig931.2.1 vs. uniprot
Match: A0A8H7EZ65_AGABI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7EZ65_AGABI)

HSP 1 Score: 107 bits (267), Expect = 3.570e-25
Identity = 54/125 (43.20%), Postives = 75/125 (60.00%), Query Frame = 1 
Query:    1 IKDLGKAELYLGYHITRDRDAGRLKFDQHHYVRTMASKFSVEKTS--TTPAAAGAKLLFKDDAPQTEAETE*MRSTPYREAVGALMWAATMTRPDVAYAAHQLGRFNDNPRPAHWRAANRALQYL 369
            ++DLG   L LG  + +DR    +   Q HY++ +  +F+++  +  +TP A G++L   D  P  E + E M+S PY  AVGAL + ATMTRPD+AYA   LGRFN NP PAHW A     +YL
Sbjct:   45 LRDLGSTTLLLGIQVKQDRSHHTISLSQEHYIKELLERFNMDDANPLSTPLALGSEL--SDIIPSLEDQAE-MKSVPYLNAVGALQYLATMTRPDIAYAVSYLGRFNSNPAPAHWLAVKHLFRYL 166
[Close]
BLAST of mRNA_A-nodosum_M_contig931.2.1 vs. uniprot
Match: A0A8H7EV65_AGABI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7EV65_AGABI)

HSP 1 Score: 108 bits (269), Expect = 6.450e-25
Identity = 54/125 (43.20%), Postives = 75/125 (60.00%), Query Frame = 1 
Query:    1 IKDLGKAELYLGYHITRDRDAGRLKFDQHHYVRTMASKFSVEKTS--TTPAAAGAKLLFKDDAPQTEAETE*MRSTPYREAVGALMWAATMTRPDVAYAAHQLGRFNDNPRPAHWRAANRALQYL 369
            ++DLG   L LG  + +DR    +   Q HY++ +  +F+++  +  +TP A G++L   D  P  E + E M+S PY  AVGAL + ATMTRPD+AYA   LGRFN NP PAHW A     +YL
Sbjct:   42 LRDLGSTTLLLGIQVKQDRSHHTISLSQEHYIKELLERFNMDDANPLSTPLAPGSEL--SDIVPSLEEQAE-MKSVPYLNAVGALQYLATMTRPDIAYAVSYLGRFNSNPAPAHWLAVKHLFRYL 163
[Close]
BLAST of mRNA_A-nodosum_M_contig931.2.1 vs. uniprot
Match: A0A8H7F7C8_AGABI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7F7C8_AGABI)

HSP 1 Score: 108 bits (269), Expect = 8.820e-25
Identity = 54/125 (43.20%), Postives = 75/125 (60.00%), Query Frame = 1 
Query:    1 IKDLGKAELYLGYHITRDRDAGRLKFDQHHYVRTMASKFSVEKTS--TTPAAAGAKLLFKDDAPQTEAETE*MRSTPYREAVGALMWAATMTRPDVAYAAHQLGRFNDNPRPAHWRAANRALQYL 369
            ++DLG   L LG  + +DR    +   Q HY++ +  +F+++  +  +TP A G++L   D  P  E + E M+S PY  AVGAL + ATMTRPD+AYA   LGRFN NP PAHW A     +YL
Sbjct:  193 LRDLGSTTLLLGIQVKQDRSHRTISLSQEHYIKELLERFNMDDANPLSTPLAPGSEL--SDIVPSLEEQAE-MKSVPYLNAVGALQYLATMTRPDIAYAVSYLGRFNSNPAPAHWLAVKHLFRYL 314
[Close]
BLAST of mRNA_A-nodosum_M_contig931.2.1 vs. uniprot
Match: A0A8H7F4K2_AGABI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7F4K2_AGABI)

HSP 1 Score: 105 bits (263), Expect = 2.350e-24
Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = 1 
Query:    1 IKDLGKAELYLGYHITRDRDAGRLKFDQHHYVRTMASKFSVEKTS--TTPAAAGAKLLFKDDAPQTEAETE*MRSTPYREAVGALMWAATMTRPDVAYAAHQLGRFNDNPRPAHWRAANRALQYL 369
            ++DLG   L LG  + +DR    +   Q HY++ +  +F+++  +  +TP A G++L   D  P  + + E M+S PY  AVGAL + ATMTRPD+AYA   LGRFN NP PAHW A     +YL
Sbjct:   14 LRDLGSTTLLLGIQVKQDRSHHTISLSQEHYIKELLERFNMDDANPLSTPLAPGSEL--SDIIPSLKDQAE-MKSVPYLNAVGALQYLATMTRPDIAYAVSYLGRFNSNPAPAHWLAVKHLFRYL 135
[Close]
BLAST of mRNA_A-nodosum_M_contig931.2.1 vs. uniprot
Match: A0A8H7F2I2_AGABI (Reverse transcriptase Ty1/copia-type domain-containing protein n=6 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7F2I2_AGABI)

HSP 1 Score: 107 bits (267), Expect = 5.490e-24
Identity = 54/125 (43.20%), Postives = 75/125 (60.00%), Query Frame = 1 
Query:    1 IKDLGKAELYLGYHITRDRDAGRLKFDQHHYVRTMASKFSVEKTS--TTPAAAGAKLLFKDDAPQTEAETE*MRSTPYREAVGALMWAATMTRPDVAYAAHQLGRFNDNPRPAHWRAANRALQYL 369
            ++DLG   L LG  + +DR    +   Q HY++ +  +F+++  +  +TP A G++L   D  P  E + E M+S PY  AVGAL + ATMTRPD+AYA   LGRFN NP PAHW A     +YL
Sbjct:  116 LRDLGSTTLLLGIQVKQDRSHHTISLSQEHYIKELLERFNMDDANPLSTPLAPGSEL--SDIIPSLEDQAE-MKSVPYLNAVGALQYLATMTRPDIAYAVSYLGRFNSNPAPAHWLAVKHLFRYL 237
[Close]
BLAST of mRNA_A-nodosum_M_contig931.2.1 vs. uniprot
Match: A0A8H7EWQ7_AGABI (Integrase catalytic domain-containing protein n=1 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7EWQ7_AGABI)

HSP 1 Score: 108 bits (271), Expect = 5.690e-24
Identity = 55/125 (44.00%), Postives = 75/125 (60.00%), Query Frame = 1 
Query:    1 IKDLGKAELYLGYHITRDRDAGRLKFDQHHYVRTMASKFSVEKTS--TTPAAAGAKLLFKDDAPQTEAETE*MRSTPYREAVGALMWAATMTRPDVAYAAHQLGRFNDNPRPAHWRAANRALQYL 369
            ++DLG   L LG  + +DR    +   Q HY++ +  +F+++  +  +TP A G++L   D  P  E + E MRS PY  AVGAL + ATMTRPD+AYA   LGRFN NP PAHW A     +YL
Sbjct:  570 LRDLGSTTLLLGIQVKQDRSHHTISLSQEHYIKELLERFNMDDANPLSTPLAPGSEL--SDIVPSLEDQAE-MRSVPYLNAVGALQYLATMTRPDIAYAVSYLGRFNSNPAPAHWLAVKHLFRYL 691
[Close]
BLAST of mRNA_A-nodosum_M_contig931.2.1 vs. uniprot
Match: A0A8H7EVX5_AGABI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7EVX5_AGABI)

HSP 1 Score: 105 bits (263), Expect = 7.300e-24
Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = 1 
Query:    1 IKDLGKAELYLGYHITRDRDAGRLKFDQHHYVRTMASKFSVEKTS--TTPAAAGAKLLFKDDAPQTEAETE*MRSTPYREAVGALMWAATMTRPDVAYAAHQLGRFNDNPRPAHWRAANRALQYL 369
            ++DLG   L LG  + +D     +   Q HY++ +  +F+++  +  +TP A G++L   D  P  E + E M+S PY  AVGAL + ATMTRPD+AYA   LGRFN NP PAHW A   + +YL
Sbjct:  116 LRDLGSTTLLLGIQVKQDHSHRTISLSQEHYIKELLERFNMDDANPLSTPLAPGSEL--SDIVPSLEDQAE-MKSVPYLNAVGALQYLATMTRPDIAYAVSYLGRFNSNPAPAHWLAFKHSFRYL 237
[Close]
BLAST of mRNA_A-nodosum_M_contig931.2.1 vs. uniprot
Match: K5WG93_AGABU (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=K5WG93_AGABU)

HSP 1 Score: 105 bits (261), Expect = 9.740e-24
Identity = 52/125 (41.60%), Postives = 72/125 (57.60%), Query Frame = 1 
Query:    1 IKDLGKAELYLGYHITRDRDAGRLKFDQHHYVRTMASKFSVEKTS--TTPAAAGAKLLFKDDAPQTEAETE*MRSTPYREAVGALMWAATMTRPDVAYAAHQLGRFNDNPRPAHWRAANRALQYL 369
            ++DLG   L LG  + +DR    +   Q HY++ +  +F+++  +  +TP A G++L   D  P  E + E     PY  AVGAL + ATMTRPD+AYA   LGRFN NP PAHW A     +YL
Sbjct:   14 LRDLGSTTLLLGIQVKQDRSHHTISLSQEHYIKELLERFNMDDANPLSTPLAPGSEL--SDIIPSLEDQAEMKSQCPYLNAVGALQYLATMTRPDIAYAVSYLGRFNSNPAPAHWLAVKHLFRYL 136
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig931.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H7F2H5_AGABI1.680e-2643.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0A9Z147_LYGHE5.510e-2643.41Retrovirus-related Pol polyprotein from transposon... [more]
A0A8H7EZ65_AGABI3.570e-2543.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H7EV65_AGABI6.450e-2543.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H7F7C8_AGABI8.820e-2543.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H7F4K2_AGABI2.350e-2442.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H7F2I2_AGABI5.490e-2443.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H7EWQ7_AGABI5.690e-2444.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A8H7EVX5_AGABI7.300e-2442.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
K5WG93_AGABU9.740e-2441.60Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig931contigA-nodosum_M_contig931:183933..184723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7425.NV18911-PA
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size606
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.33e-15
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size396
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870412.3490124-CDS-A-nodosum_M_contig931:183932..1841541680870412.3490124-CDS-A-nodosum_M_contig931:183932..184154Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig931 183933..184154 -
1680870412.3606992-CDS-A-nodosum_M_contig931:184339..1845131680870412.3606992-CDS-A-nodosum_M_contig931:184339..184513Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig931 184340..184513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870412.3708122-UTR-A-nodosum_M_contig931:184513..1847231680870412.3708122-UTR-A-nodosum_M_contig931:184513..184723Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig931 184514..184723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig931.2.1prot_A-nodosum_M_contig931.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig931 183933..184513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig931.2.1

>prot_A-nodosum_M_contig931.2.1 ID=prot_A-nodosum_M_contig931.2.1|Name=mRNA_A-nodosum_M_contig931.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=132bp
MRSTPYREAVGALMWAATMTRPDVAYAAHQLGRFNDNPRPAHWRAANRAL
QYLWRAKDYVALAEVVNELRFLRQVEGFLTPPIDENIVIREYKEKTLEMA
TNRFSSWRRRYVHVKYHIVRDAIESGIIRTH*
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mRNA from alignment at A-nodosum_M_contig931:183933..184723-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig931.2.1 ID=mRNA_A-nodosum_M_contig931.2.1|Name=mRNA_A-nodosum_M_contig931.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=791bp|location=Sequence derived from alignment at A-nodosum_M_contig931:183933..184723- (Ascophyllum nodosum dioecious)
ATCAAGGACTTAGGGAAGGCAGAATTATATCTCGGATACCACATCACGCG
GGATCGCGACGCGGGAAGGCTGAAGTTCGACCAACATCACTATGTACGGA
CCATGGCTTCGAAATTCAGCGTCGAGAAGACCAGCACCACGCCGGCGGCA
GCGGGAGCAAAACTCCTGTTCAAGGACGATGCCCCACAGACGGAGGCAGA
GACGGAATAAATGCGTTCCACCCCTTACCGGGAGGCGGTGGGGGCCCTCA
TGTGGGCTGCGACCATGACCCGCCCTGATGTCGCGTACGCTGCTCATCAG
CTAGGAAGATTTAACGACAACCCGAGACCAGCACACTGGAGGGCGGCGAA
TAGAGCACTACAATACCTGTGGCGCGCGAAAGATGTTGGGATCACCTACG
GTGAAACGCAGGGGTAGTGCACAAAACTAGCGGCATGGGTGGACGCCGAT
TTCGCCACTTGCCCAGACACTCGGCGTTTGGTTTCAGGCGGAGCAGTGAT
GCTGGGGGCGCGATCAGTTGGTTCTCGAGGATGCAGAAAGTGACCGCGGC
CGCGTCATCCGAATCATAGTATGTGGCGCTGGCAGAAGTTGTAAATGAGC
TCCGTTTCCTTCGACAGGTGGAGGGCTTCTTGACGCCGCCGATCGACGAA
AACATCGTAATCAGGGAATATAAAGAAAAAACTCTCGAGATGGCGACCAA
CCGTTTCAGCAGCTGGCGTAGGAGGTACGTGCACGTGAAATATCACATCG
TTCGCGATGCGATAGAGAGTGGTATAATTCGAACCCACTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig931:183933..184723-

>mRNA_A-nodosum_M_contig931.2.1 ID=mRNA_A-nodosum_M_contig931.2.1|Name=mRNA_A-nodosum_M_contig931.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at A-nodosum_M_contig931:183933..184723- (Ascophyllum nodosum dioecious)
ATGCGTTCCACCCCTTACCGGGAGGCGGTGGGGGCCCTCATGTGGGCTGC
GACCATGACCCGCCCTGATGTCGCGTACGCTGCTCATCAGCTAGGAAGAT
TTAACGACAACCCGAGACCAGCACACTGGAGGGCGGCGAATAGAGCACTA
CAATACCTGTGGCGCGCGAAAGATTATGTGGCGCTGGCAGAAGTTGTAAA
TGAGCTCCGTTTCCTTCGACAGGTGGAGGGCTTCTTGACGCCGCCGATCG
ACGAAAACATCGTAATCAGGGAATATAAAGAAAAAACTCTCGAGATGGCG
ACCAACCGTTTCAGCAGCTGGCGTAGGAGGTACGTGCACGTGAAATATCA
CATCGTTCGCGATGCGATAGAGAGTGGTATAATTCGAACCCACTAG
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