mRNA_A-nodosum_M_contig931.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig931.10.1
Unique NamemRNA_A-nodosum_M_contig931.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig931.10.1 vs. uniprot
Match: D7G1K8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1K8_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 2.010e-86
Identity = 164/316 (51.90%), Postives = 194/316 (61.39%), Query Frame = 1 
Query:    1 MRSDVA--IGLLGLAICGVASAAPTYSCFDPPAIEGQTNPFGASMDDVVEAECCEALIDENDLLAGRLVAWDPINCNHGPDGPAIAEAFLCRAHDTDGCRFCHLSCDGFEGLCITCDEIYSA---TATPTPAPNLDT------PAPFMI--------------PTP-----------------------------------------SXXXXXXXXXXXXXXXXXXXXXXXXXTMDDCECLGNMTDTETEVLTIRGKTMRCDPTCSNGEDTVWGVLNCNYFGLGQDCRTCADTCEDQSDGLWLDQYGAFCKPCYAI 750
            MRSD+A  I    L++C V SAAPTYSCFDPP  EGQTNP G  M+DVVE+ECCEALIDE+D++A R V WDP+NCNHGP    IAEA+LCRAHDTDGCRFCH SCDG+EGLCITC+E+      + +PTP+P+ +T      PAP ++              P P                                          XXXXXXXXXXXXXXXXXXX         DCEC+ ++++ E  VLT R K M CDPTCS+  D VWGV+NCNYF LGQ+CR C+D C+DQ DG WLDQ G  CKPC AI
Sbjct:    1 MRSDIATVIAFGLLSVCPV-SAAPTYSCFDPPD-EGQTNPLGEGMEDVVESECCEALIDESDMMADREVIWDPVNCNHGPGDEPIAEAYLCRAHDTDGCRFCHDSCDGYEGLCITCEEVLEDLLNSDSPTPSPDFETSEFPATPAPAILTAATEAPFGIFPATPAPVAPVXXPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAPTAEASDCECVNSLSEEEMAVLTRRSKNMVCDPTCSDQSDLVWGVMNCNYFALGQNCRACSDLCDDQGDGTWLDQDGFPCKPCSAI 314
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig931.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1K8_ECTSI2.010e-8651.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig931contigA-nodosum_M_contig931:266244..270909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FTU6
PFAMsTRP,VWA
Model size800
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons4
Evalue1.14e-06
EggNOG OGsKOG3544@1|root,KOG3544@2759|Eukaryota
Descriptionstructural constituent of cuticle
Cds size756
COG categoryD
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870412.4442997-CDS-A-nodosum_M_contig931:266243..2664191680870412.4442997-CDS-A-nodosum_M_contig931:266243..266419Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig931 266244..266419 +
1680870412.4560988-CDS-A-nodosum_M_contig931:268174..2683221680870412.4560988-CDS-A-nodosum_M_contig931:268174..268322Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig931 268175..268322 +
1680870412.474977-CDS-A-nodosum_M_contig931:268696..2689941680870412.474977-CDS-A-nodosum_M_contig931:268696..268994Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig931 268697..268994 +
1680870412.4876316-CDS-A-nodosum_M_contig931:270731..2708651680870412.4876316-CDS-A-nodosum_M_contig931:270731..270865Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig931 270732..270865 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870412.5019722-UTR-A-nodosum_M_contig931:270865..2709091680870412.5019722-UTR-A-nodosum_M_contig931:270865..270909Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig931 270866..270909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig931.10.1prot_A-nodosum_M_contig931.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig931 266244..270865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig931.10.1

>prot_A-nodosum_M_contig931.10.1 ID=prot_A-nodosum_M_contig931.10.1|Name=mRNA_A-nodosum_M_contig931.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=252bp
MRSDVAIGLLGLAICGVASAAPTYSCFDPPAIEGQTNPFGASMDDVVEAE
CCEALIDENDLLAGRLVAWDPINCNHGPDGPAIAEAFLCRAHDTDGCRFC
HLSCDGFEGLCITCDEIYSATATPTPAPNLDTPAPFMIPTPSPTPSPTPS
PTPAPIPSPTPAPTPAPTMDDCECLGNMTDTETEVLTIRGKTMRCDPTCS
NGEDTVWGVLNCNYFGLGQDCRTCADTCEDQSDGLWLDQYGAFCKPCYAI
P*
back to top

mRNA from alignment at A-nodosum_M_contig931:266244..270909+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig931.10.1 ID=mRNA_A-nodosum_M_contig931.10.1|Name=mRNA_A-nodosum_M_contig931.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4666bp|location=Sequence derived from alignment at A-nodosum_M_contig931:266244..270909+ (Ascophyllum nodosum dioecious)
ATGCGCTCCGACGTAGCCATCGGTCTCCTCGGGCTTGCGATCTGCGGAGT
CGCGTCCGCGGCACCGACGTACTCTTGCTTTGATCCCCCTGCGATCGAGG
GTCAGACTAACCCGTTCGGAGCGAGCATGGACGATGTGGTCGAGGCCGAG
TGCTGCGAGGCGCTCATCGACGAGAAGTGAGTCACGCCTGCAAGGATCTC
GCGTTCGTTCACCAATCACTATCTGTAGTCACCAAGGCGGCTGGGAAGCT
GCGTCGATGGTATGTATGTATTAATAGTATATATGTGTATGTATGTATAA
TCAATCGTGACTGCCCCCCCCTCCCTCCCCGTCTCGAACCTGTCGGTCGG
CCCTTGCTGGGATAGATAGAGGAAACTTGCTTCCGGCGCATGGAACTAAT
TGAATCGATCAAACAGAGGTGGAGTTTCAAAAGAAACATGTACACCAGTA
CGTATGTACAAAGGCTTATTCCCAGGGCCTGGCGCAGTGAGCGGGCCAGC
GTTCCTCTGTAGCGCACCAGGAATCGTCTGATAGTCACTACTACTACTCA
AGAAGCTTCCTTGCAGCACAACTACTACTTATTAATTGATACTGTACGTA
CCACCTCCTCCTGGACTCCTAAAAAAACGCATGCTACAGGTACTGTCGGT
TGTACGGCGTATCTTTTTTTTTAAGAAAAATCAGAACGCACGTAGACCTT
CTGAGCATCCCCCGGTTATGGGGAAAAAAATGTCTTGTTGCACTCCTCCG
GAGTAAATATCAGAACTCGCCCGCGACGGATCCAGACGTACCTCTCTCCT
GAACAACAACCTCCTCCGTGTTAGCACGCTACGGGTGACGAAAGATGCTC
GATCCCCGAAGTATTCCGGTATATTTCGAGTTATTAATTCAAACCTTTCG
ACGTAGCAGCATGTATGTACATGTACTTTTTCCCGAACGGACAACGGACG
TTGGAGATGCTCGGAAGGTTTGGGTGCGTTCAGAGTTTTCTCCGCGTAGA
CTAGAGCTTTGGCACCTACTACAGAGAGAGACTGATATTCATAATATGCC
GTTACAAGAACAACCGCGCGTGGTCAAAAGAACCGTGCAGCCCGTACGCG
TCTTGGGATGCTGAGGAGATCGGGACGCCAGACAGCGTTCAGCGTCATCA
CCAATGAAAACTGCAGTATGCTCTACACGGAGAACCGACGTCCGCGGCCG
ATCGATTTATGAGTACAAGCACATGGTGCCTTTTTAAAGACTACCAGGTA
CTGTAGTTATAATTTCTTGCGTCGCCGTCCGTCACCCCCCCCCCCCCTCC
CCCTTGTCCGACTTGTTCTGGGCACCAAAATCAATCAATCAATAAAAGAA
CATTCTAGATATTATCCTCCTACAGTAGTGGTACGAGTATTGTCGTTGTG
CTCAACAGGTTTGTCCAGTCAATCAACTAGTAGTACTTCAATCTAGAGGA
GGCCCTACCTCCCTACTACATTATTTTGACTTATTTTATATCAATAGTGC
AATAATATTAATGTTATAGTAACCAATAGCTCCACTAGTATTATTACATT
ATTACTACGTTGATCTAAGTATAGTAGTTGTTATACTACTTAGAATAATC
GGTGGTACGCCCACATGCTTCATTAGAGTCGAGTCTATTCACAATAGGTG
GAGTGGGGGGGAGGGCTATACGTTTTTAATACACTGTAAATATTGAAGCA
TTTCACCCTCTCGCGATACCTTACTTTTTTCGTGTCACCAAACTTACGCT
TCGAGACAAGAATCGTTCCTTGCTTGCTCGTGATAAACCCCTCCGCTTTC
CCCCGCGTGTGAGCACATTTTGAAGCCAGTCATCCAATCAACCAACTACC
GAGGCGTGTCTTGATGTCCTCGCCCCTGCGCGTCGATCGCCACCTTGTTT
CCCCTCGCACGCATATGCCTCATCGCTGTAGTGATCTCCTCGCGGGGCGT
CTCGTTGCATGGGATCCGATTAACTGCAACCACGGCCCCGATGGGCCGGC
CATCGCCGAGGCCTTTCTATGCCGGGCTCACGACACCGACGGCTGCCGGT
TCTGTCATCTGTCATGCGACGGCTTCGAGGTGAATGAACAACAGACTATG
TTTGTGAGTTTGTTTGTTTGTTTTAGGCTTGGTTCTCTTCTTGGTTTTCT
TATTTTGTTTCATTTTTTTTTAACATATATATTTGGGGGCGGAGGGGGGG
GGTACAGTCTAGATGACGTGCGATAGAGTCAACCTGGACGCATCCGTTTC
GATCGTTATGTTTTCGTTTTCATTAATCATAGGGGTGGGGGGGGTTCTTC
CGTTTTAGCAAAAACCAACAAAGCAGCCCCCCGAACCCCGTGCCAAACAA
ACATGAAACTAAAAGCTAAAAAACTCCTATCCACTTATTTCTCCCGCCTA
CTTAACTTATGACCTCCTCCCCTTCCCTTCCCTTCTCAAAACCTTCCCCT
AAGGGTCTGTGCATCACGTGCGACGAGATATACTCGGCGACCGCTACTCC
TACCCCAGCCCCAAACCTCGACACCCCGGCACCCTTCATGATCCCGACAC
CGTCACCGACCCCATCTCCTACCCCATCCCCAACCCCCGCTCCCATCCCA
TCTCCGACCCCCGCCCCTACCCCGGCGCCTACCATGGATGACTGTGAGTG
CCTGGGGAACATGACCGACACCGAAACCGAGGTGCTGACCATCCGGGGCA
AGACCATGCGGTGCGACCCCACGTGCTCCAACGGCGAAGATACGGTGTGG
GGTGAGAAGACCACATGATGTCTTGTTTCCCCCCTAACCTGGCTGCTCCC
TTGTAATATAAGTTATGTAGTACATGGAGCCTGCGATATACGGCCTGTCT
GCTTTTTTGGGGGGGGGGTGTGGATCGATGTGGAATGGGAAATTATGGTA
TAGAGAGAGAAGAGTCGTTTCACGTCTGGCTCCTCCTACGAGTTACTATG
CGGGGAAGGTTTCCAGCATACTAAGTGCACATGCATCCGCACGCGTCGGG
GGATGAGTGTCATAACTAACTGTATACCGGTCGCGCATATTATACCGAGC
GCTCCGCGGTGAGATCTCAAATCGAGGCGGGATGCTGAGCCCATCAGTCA
CCTGTTGTGCAAAGCCTGCTGGTTTTGGCCCGGCAATAATAACAACAGTA
CGAGTACTAATAGTAGTATACTGTAGTTAGCTCGTCGCCCGAGTGGTCTA
GTAGGTAAGCTGCACATCTGCTAGTACGGAAGCCGTGAGTTCGATTCTTA
CCAAAGTAGGATTTGTGTTATTTCTTTCGTAACGGAAAGCGTGGGAACGT
GAGTAAGTAAAACTCAACCATTGGTTGGCGAGTTGTAAGAGTGCTGAACT
TGCATCGCGATAAAACAATTGTAAGGCGTGAACCGGGGAGAGATGGGAAT
ATCCTTTGTGACCACAGGCAGGATGGTAATGATGAGGTCCATCGGCTATA
AGTGAGATGAAAAAAAAAAAAAAAAAAAAAGTATACTGTAGCAGTTGTCT
GTGCAGGTCTCTGCCTCTCTCCCGTTCTGTTACCGTGTGCGTATTGATTG
GCGGGTTAACAAGTATAACAACAGCAGTGTAAAATCCCTCGTCGCCCGAG
TGGTCTAGTAGGTAACCCGCACACCTGCTAGTGCGGAAGTCGTCAGTTCG
ATTCTTACCAAAAAAGTAGGATTTGTGTTCTTTCTTTCGTAACGGAAAGC
GTGGGAACATAATGAGTATGTAAGTAAAATTCAACCATTATTGGTTGACG
AGTTGTAAAAGTGCTGAACTTGCATCGCGAAAAAAAAATCGTAAGGCGTG
AACCGGGGAGAGATGGTAAGAACCTTAGTGACCACACGCAAGATGGTAAT
GATGAGGTCCATCGGCTACAAGTGAGATTAAAGAAAAGAAAAGAAAAGAA
AAAAATAGTATAGTCATACATATTCGTTTCAGGAAGCAAATGCGTCGTCA
CCTCGTACAGCAGGTGTTGTTGCATGCTACCCACTTCCCGTGACGACTTG
GATACCAGCTGAAGTGTCGAGCAGTTAGACGTGTTTTACCGGGGAACACT
CGAACTGTTTCTTAGTCTTTCCGTTGAGTCATTTTTTTCCTGTATTTTTA
TTCATATCTTGGCGTGGTGGATGGGGGGGGGCTATGACACTGTGTGTAGT
CTATTCTGCGAATTATTGTAATAAATGATTCCTTATTTGGTTTGCGTCAC
CTTTTTTCTCCCATTTGCTTCAAAACCTGTTATGGGTTGTAGGGGGGGGG
GAATAGTAAAACGGAAATAACCTGGTCGCCACGCCGTGTGTTGTACCAAT
TCCAATGCAACGAGAAAACGCCTTATTACAGTAGTAGTACCAACTATTAA
TACATTGTACAGTATAATATTACAATTAGCGAGGCACaaaAAAAAAAAAA
AAAGAGTGAGCACCACACCCAGAATATCCTCTCTCTCTCCCTCCTCCATC
CAATCCTCTTCACATGTCAATCATCTCAATCCCGCCAGGTGTCCTCAACT
GCAACTACTTCGGCCTAGGGCAGGACTGCCGCACCTGCGCCGACACGTGC
GAGGACCAGTCCGACGGCCTCTGGCTCGACCAGTACGGGGCGTTCTGCAA
GCCCTGCTACGCCATTCCCTGAAAAAGAGGACATAAGACGATATAAACAA
AAACAGGACAGAGAAT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig931:266244..270909+

>mRNA_A-nodosum_M_contig931.10.1 ID=mRNA_A-nodosum_M_contig931.10.1|Name=mRNA_A-nodosum_M_contig931.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at A-nodosum_M_contig931:266244..270909+ (Ascophyllum nodosum dioecious)
ATGCGCTCCGACGTAGCCATCGGTCTCCTCGGGCTTGCGATCTGCGGAGT
CGCGTCCGCGGCACCGACGTACTCTTGCTTTGATCCCCCTGCGATCGAGG
GTCAGACTAACCCGTTCGGAGCGAGCATGGACGATGTGGTCGAGGCCGAG
TGCTGCGAGGCGCTCATCGACGAGAATGATCTCCTCGCGGGGCGTCTCGT
TGCATGGGATCCGATTAACTGCAACCACGGCCCCGATGGGCCGGCCATCG
CCGAGGCCTTTCTATGCCGGGCTCACGACACCGACGGCTGCCGGTTCTGT
CATCTGTCATGCGACGGCTTCGAGGGTCTGTGCATCACGTGCGACGAGAT
ATACTCGGCGACCGCTACTCCTACCCCAGCCCCAAACCTCGACACCCCGG
CACCCTTCATGATCCCGACACCGTCACCGACCCCATCTCCTACCCCATCC
CCAACCCCCGCTCCCATCCCATCTCCGACCCCCGCCCCTACCCCGGCGCC
TACCATGGATGACTGTGAGTGCCTGGGGAACATGACCGACACCGAAACCG
AGGTGCTGACCATCCGGGGCAAGACCATGCGGTGCGACCCCACGTGCTCC
AACGGCGAAGATACGGTGTGGGGTGTCCTCAACTGCAACTACTTCGGCCT
AGGGCAGGACTGCCGCACCTGCGCCGACACGTGCGAGGACCAGTCCGACG
GCCTCTGGCTCGACCAGTACGGGGCGTTCTGCAAGCCCTGCTACGCCATT
CCCTGA
back to top