mRNA_A-nodosum_M_contig9309.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9309.1.1
Unique NamemRNA_A-nodosum_M_contig9309.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig9309.1.1 vs. uniprot
Match: D7FP05_ECTSI (GPA1, alpha subunit of a heterotrimeric G protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP05_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 3.060e-91
Identity = 155/207 (74.88%), Postives = 175/207 (84.54%), Query Frame = 1
Query:    1 MGICSSSMSEEEKEAAKKTKEVEAANAAAFQKEQEKVKLLLLGAGESGKSTVFKQMKILHGTVSLEERKQITPVV-CNAIMSMKVLVEQAGISITSHLLANFQENVKCKEAFEMVRDCDEGAVIDMTLGQAIKDVWEDEAMQRVWARRAEYQIVESVKFYFNEMDRIMQDDFMATQQDILYSRVRTSGIVTERYEIDGTMFEMYDVG 618
            MGICSS MS E+KEA +KTKEVEAANAAAFQKEQEK+KLLLLGAGESGKST+FKQMKIL G VS EE+KQ+TPVV  N IMSMK+LVEQA        L   +ENV C E+F++V DC++ A IDM LGQAI+DVW D AM RVW RRAEYQIVESVK++FNEM+RI QDDF+ATQQD+LYSRVRTSGIVTERYEIDG+ FEMYDVG
Sbjct:    1 MGICSSKMSAEDKEALRKTKEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKILFGVVSAEEKKQMTPVVYSNTIMSMKILVEQAT-------LLGEEENVACPESFKLVVDCEDSAAIDMELGQAIQDVWSDPAMLRVWERRAEYQIVESVKYFFNEMERIKQDDFVATQQDVLYSRVRTSGIVTERYEIDGSTFEMYDVG 200          
BLAST of mRNA_A-nodosum_M_contig9309.1.1 vs. uniprot
Match: A0A6S9GNU7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GNU7_HETAK)

HSP 1 Score: 241 bits (614), Expect = 4.510e-76
Identity = 114/154 (74.03%), Postives = 133/154 (86.36%), Query Frame = 2
Query:  617 GQRNERKKWIHCFDNVTMIIFVAALSEYDQNLFEDATTNRLVESMDLFNEICNNRYFSESSMILFLNKKDLFADKIKRVDIKSVERWSDFPGEPGDEEAGKQYFLSQFLKFNKNPDREVYHHVTCATDTENVGFVFNSCKDVILRSNLKDSGFV 1078
            GQRNERKKWIHCFD+VT +IFVAALSEYDQ LFEDA+TNR+VE++DLF EICNNRYF  SSMILFLNK+DLFA+KI   DIK+V  ++DFPG  GD E G QYFL+ FLK N+NP+R +YHHVTCATDT+NV  VFN+CKD+ILR NLKDSGF+
Sbjct:   14 GQRNERKKWIHCFDDVTAVIFVAALSEYDQALFEDASTNRMVEAIDLFAEICNNRYFHNSSMILFLNKRDLFAEKIMIKDIKAVMHFNDFPGGLGDFELGVQYFLNLFLKVNQNPERVIYHHVTCATDTQNVQVVFNACKDIILRGNLKDSGFM 167          
BLAST of mRNA_A-nodosum_M_contig9309.1.1 vs. uniprot
Match: A0A7S2XUR0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUR0_9STRA)

HSP 1 Score: 242 bits (618), Expect = 4.540e-74
Identity = 114/154 (74.03%), Postives = 133/154 (86.36%), Query Frame = 2
Query:  617 GQRNERKKWIHCFDNVTMIIFVAALSEYDQNLFEDATTNRLVESMDLFNEICNNRYFSESSMILFLNKKDLFADKIKRVDIKSVERWSDFPGEPGDEEAGKQYFLSQFLKFNKNPDREVYHHVTCATDTENVGFVFNSCKDVILRSNLKDSGFV 1078
            GQRNERKKWIHCFD+VT +IFVAALSEYDQ+LFEDA+TNR+VE+++LF EICNNRYF  SSMILFLNK+DLFA+KI   DIK V  ++DFPG  GD E G QYFL+ FLK N+NPDR +YHHVTCATDT+NV  VFN+CKD+ILR NLKDSGF+
Sbjct:  202 GQRNERKKWIHCFDDVTAVIFVAALSEYDQSLFEDASTNRMVEAIELFAEICNNRYFHNSSMILFLNKRDLFAEKIMVKDIKQVSHFNDFPGGLGDFELGVQYFLNLFLKVNQNPDRVIYHHVTCATDTQNVQVVFNACKDIILRGNLKDSGFM 355          
BLAST of mRNA_A-nodosum_M_contig9309.1.1 vs. uniprot
Match: A0A836CAY4_9STRA (GPA1, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAY4_9STRA)

HSP 1 Score: 236 bits (603), Expect = 7.580e-72
Identity = 110/154 (71.43%), Postives = 132/154 (85.71%), Query Frame = 2
Query:  617 GQRNERKKWIHCFDNVTMIIFVAALSEYDQNLFEDATTNRLVESMDLFNEICNNRYFSESSMILFLNKKDLFADKIKRVDIKSVERWSDFPGEPGDEEAGKQYFLSQFLKFNKNPDREVYHHVTCATDTENVGFVFNSCKDVILRSNLKDSGFV 1078
            GQRNERKKWIHCFD+VT +IFV+ALSEYDQ+LFEDATTNR+VE+++LF EICNNRYF +SSMILFLNKKDL+ DKIK+VDIKS++ +SDFPG  GD E G +YF   FL  N NP R +Y +VTCATDT+NV  VF++CKD+ILR NLKDSGF+
Sbjct:  201 GQRNERKKWIHCFDDVTAVIFVSALSEYDQSLFEDATTNRMVEAIELFGEICNNRYFQDSSMILFLNKKDLYEDKIKKVDIKSIDAFSDFPGGLGDAEKGIEYFTGLFLAVNTNPARCIYSYVTCATDTDNVNKVFSACKDIILRGNLKDSGFI 354          
BLAST of mRNA_A-nodosum_M_contig9309.1.1 vs. uniprot
Match: A0A485L3B6_9STRA (Aste57867_14988 protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A485L3B6_9STRA)

HSP 1 Score: 228 bits (582), Expect = 1.030e-68
Identity = 100/154 (64.94%), Postives = 135/154 (87.66%), Query Frame = 2
Query:  617 GQRNERKKWIHCFDNVTMIIFVAALSEYDQNLFEDATTNRLVESMDLFNEICNNRYFSESSMILFLNKKDLFADKIKRVDIKSVERWSDFPGEPGDEEAGKQYFLSQFLKFNKNPDREVYHHVTCATDTENVGFVFNSCKDVILRSNLKDSGFV 1078
            GQRNERKKWIHCF++VT +IFVAALSEYDQ+L+ED++TNR++E++ LF+EI NNR+FS S+MILFLNKKDLF +K+K++DIKS+E + DFPG  GD + G  YFLS+FL+ N+ P++E+YHHVTCATD++NV  VFN+CKD+IL+ N++ SGF+
Sbjct:  200 GQRNERKKWIHCFEDVTSVIFVAALSEYDQSLYEDSSTNRMIEAITLFDEIVNNRFFSNSAMILFLNKKDLFEEKVKKIDIKSIEVFKDFPGGLGDFDKGVTYFLSKFLEMNRQPEKEIYHHVTCATDSQNVQVVFNACKDIILKQNIRGSGFM 353          
BLAST of mRNA_A-nodosum_M_contig9309.1.1 vs. uniprot
Match: K3WPM8_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WPM8_GLOUD)

HSP 1 Score: 228 bits (582), Expect = 1.090e-68
Identity = 102/154 (66.23%), Postives = 133/154 (86.36%), Query Frame = 2
Query:  617 GQRNERKKWIHCFDNVTMIIFVAALSEYDQNLFEDATTNRLVESMDLFNEICNNRYFSESSMILFLNKKDLFADKIKRVDIKSVERWSDFPGEPGDEEAGKQYFLSQFLKFNKNPDREVYHHVTCATDTENVGFVFNSCKDVILRSNLKDSGFV 1078
            GQRNERKKWIHCF++VT +IFVAALSEYDQ+L+EDA+TNR++E++ LF+EI NN++F  S+MILFLNKKDLF DKIK++D KSVE + DFPG  GD E G QYFL +F++ N+ P++E+YHHVTCATD++NV  VFN+CKD+IL+ N+K SGF+
Sbjct:  202 GQRNERKKWIHCFEDVTAVIFVAALSEYDQSLYEDASTNRMIEAITLFDEIINNKFFLNSAMILFLNKKDLFQDKIKKIDPKSVEVFKDFPGGIGDYELGVQYFLGKFMEMNRQPEKEIYHHVTCATDSQNVQVVFNACKDIILKQNIKGSGFM 355          
BLAST of mRNA_A-nodosum_M_contig9309.1.1 vs. uniprot
Match: H3GA02_PHYRM (Uncharacterized protein n=35 Tax=Oomycota TaxID=4762 RepID=H3GA02_PHYRM)

HSP 1 Score: 225 bits (574), Expect = 1.710e-67
Identity = 100/154 (64.94%), Postives = 133/154 (86.36%), Query Frame = 2
Query:  617 GQRNERKKWIHCFDNVTMIIFVAALSEYDQNLFEDATTNRLVESMDLFNEICNNRYFSESSMILFLNKKDLFADKIKRVDIKSVERWSDFPGEPGDEEAGKQYFLSQFLKFNKNPDREVYHHVTCATDTENVGFVFNSCKDVILRSNLKDSGFV 1078
            GQRNERKKWIHCF++VT +IFVAALSEYDQ+L+EDA+TNR++E++ LF+EI NN++F  S+MILFLNKKDLF DKIK+VD K+V+ + DFPG  GD + G QYFL +F++ N+ P++E+YHHVTCATD++NV  VFN+CKD+IL+ N+K SGF+
Sbjct:  202 GQRNERKKWIHCFEDVTAVIFVAALSEYDQSLYEDASTNRMIEAITLFDEIVNNKFFLNSAMILFLNKKDLFQDKIKKVDPKTVDVFKDFPGGIGDYDLGVQYFLGKFMEMNRQPEKEIYHHVTCATDSQNVQVVFNACKDIILKQNIKGSGFM 355          
BLAST of mRNA_A-nodosum_M_contig9309.1.1 vs. uniprot
Match: T0QTL4_SAPDV (Uncharacterized protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0QTL4_SAPDV)

HSP 1 Score: 224 bits (572), Expect = 3.310e-67
Identity = 100/154 (64.94%), Postives = 133/154 (86.36%), Query Frame = 2
Query:  617 GQRNERKKWIHCFDNVTMIIFVAALSEYDQNLFEDATTNRLVESMDLFNEICNNRYFSESSMILFLNKKDLFADKIKRVDIKSVERWSDFPGEPGDEEAGKQYFLSQFLKFNKNPDREVYHHVTCATDTENVGFVFNSCKDVILRSNLKDSGFV 1078
            GQRNERKKWIHCF++VT +IFVAALSEYDQ+L+ED++TNR++E++ LF+EI NNR+F  S+MILFLNKKDLF +KI+++DIKSVE + DF G  GD E G  YFLS+FL+ N+ P++E+YHHVTCATD++NV  VFN+CKD+IL+ N++ SGF+
Sbjct:  201 GQRNERKKWIHCFEDVTSVIFVAALSEYDQSLYEDSSTNRMIEAITLFDEIVNNRFFGNSAMILFLNKKDLFEEKIRKIDIKSVEVFKDFQGGLGDFEKGVTYFLSKFLEMNRQPEKEIYHHVTCATDSQNVQVVFNACKDIILKQNIRGSGFM 354          
BLAST of mRNA_A-nodosum_M_contig9309.1.1 vs. uniprot
Match: F0WI40_9STRA (G protein alpha subunit putative n=3 Tax=Albugo TaxID=65356 RepID=F0WI40_9STRA)

HSP 1 Score: 222 bits (565), Expect = 3.790e-66
Identity = 100/154 (64.94%), Postives = 133/154 (86.36%), Query Frame = 2
Query:  617 GQRNERKKWIHCFDNVTMIIFVAALSEYDQNLFEDATTNRLVESMDLFNEICNNRYFSESSMILFLNKKDLFADKIKRVDIKSVERWSDFPGEPGDEEAGKQYFLSQFLKFNKNPDREVYHHVTCATDTENVGFVFNSCKDVILRSNLKDSGFV 1078
            GQRNERKKWIHCF++VT +IFVAALSEYDQ+L+EDA+TNR++E++ LF+EI NNR+F+ S+MILFLNKKDLF DKIK VD KSV+ +SD+ G  G+ +AG QYFL +FL+ N+ P +E++HHVTCATD++NV  VFN+CK++IL+ N+K SGF+
Sbjct:  202 GQRNERKKWIHCFEDVTAVIFVAALSEYDQSLYEDASTNRMIEAITLFDEIVNNRFFANSAMILFLNKKDLFQDKIKTVDPKSVDVFSDYSGGLGNYDAGVQYFLGKFLEMNRQPQKEIFHHVTCATDSQNVQVVFNACKEIILKQNIKGSGFM 355          
BLAST of mRNA_A-nodosum_M_contig9309.1.1 vs. uniprot
Match: A0A812ZWS0_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZWS0_SYMMI)

HSP 1 Score: 210 bits (534), Expect = 1.270e-63
Identity = 99/155 (63.87%), Postives = 126/155 (81.29%), Query Frame = 2
Query:  617 GQRNERKKWIHCFDNVTMIIFVAALSEYDQNLFEDATTNRLVESMDLFNEICNNRYFSESSMILFLNKKDLFADKIKRVDIKSVERWSDFPGEPGDEEAGKQYFLSQFLKFNKN-PDREVYHHVTCATDTENVGFVFNSCKDVILRSNLKDSGFV 1078
            GQRNERKKWIHCF++VT IIFVAALSEYDQ LFEDAT NR+VE++DLF+EI NN +F +SS+ILFLNK+DLF  KIK   I     ++D+ G PGD ++G +YFL +F+  NK+  D ++YHHVTCATDT+NV  VF++CKD+ILR NLK+SGF+
Sbjct:   40 GQRNERKKWIHCFEDVTAIIFVAALSEYDQKLFEDATANRMVEALDLFDEIINNAFFRKSSIILFLNKRDLFEMKIKTTPISDTAFFADYSGPPGDYDSGVEYFLKKFMARNKSGADHQIYHHVTCATDTKNVRVVFDACKDIILRENLKNSGFM 194          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9309.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP05_ECTSI3.060e-9174.88GPA1, alpha subunit of a heterotrimeric G protein ... [more]
A0A6S9GNU7_HETAK4.510e-7674.03Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XUR0_9STRA4.540e-7474.03Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CAY4_9STRA7.580e-7271.43GPA1, alpha subunit of a heterotrimeric G protein ... [more]
A0A485L3B6_9STRA1.030e-6864.94Aste57867_14988 protein n=6 Tax=Aphanomyces TaxID=... [more]
K3WPM8_GLOUD1.090e-6866.23Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
H3GA02_PHYRM1.710e-6764.94Uncharacterized protein n=35 Tax=Oomycota TaxID=47... [more]
T0QTL4_SAPDV3.310e-6764.94Uncharacterized protein n=2 Tax=Saprolegniaceae Ta... [more]
F0WI40_9STRA3.790e-6664.94G protein alpha subunit putative n=3 Tax=Albugo Ta... [more]
A0A812ZWS0_SYMMI1.270e-6363.87Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9309contigA-nodosum_M_contig9309:12921..17894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FP05
Preferred nameGPA1
PFAMsG-alpha
Model size1078
Max annot lvl2759|Eukaryota
KEGG koko:K04534,ko:K04630
KEGG Pathwayko04015,ko04022,ko04024,ko04062,ko04071,ko04261,ko04360,ko04371,ko04540,ko04611,ko04670,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04730,ko04914,ko04915,ko04916,ko04921,ko04923,ko04924,ko04926,ko04934,ko04971,ko05012,ko05030,ko05032,ko05034,ko05133,ko05142,ko05145,ko05200,map04015,map04022,map04024,map04062,map04071,map04261,map04360,map04371,map04540,map04611,map04670,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04730,map04914,map04915,map04916,map04921,map04923,map04924,map04926,map04934,map04971,map05012,map05030,map05032,map05034,map05133,map05142,map05145,map05200
KEGG ModuleM00695
Hectar predicted targeting categoryother localisation
Exons9
Evalue6.59e-94
EggNOG OGsKOG0082@1|root,KOG0082@2759|Eukaryota
DescriptionG-protein beta/gamma-subunit complex binding
Cds size717
COG categoryV
BRITEko00000,ko00001,ko00002,ko04031,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9309.1.1prot_A-nodosum_M_contig9309.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9309 14964..17894 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870412.1976597-UTR-A-nodosum_M_contig9309:12920..130521680870412.1976597-UTR-A-nodosum_M_contig9309:12920..13052Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9309 12921..13052 -
1680870412.2121325-UTR-A-nodosum_M_contig9309:13365..134611680870412.2121325-UTR-A-nodosum_M_contig9309:13365..13461Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9309 13366..13461 -
1680870412.221875-UTR-A-nodosum_M_contig9309:14176..142911680870412.221875-UTR-A-nodosum_M_contig9309:14176..14291Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9309 14177..14291 -
1680870412.2311273-UTR-A-nodosum_M_contig9309:14945..149631680870412.2311273-UTR-A-nodosum_M_contig9309:14945..14963Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9309 14946..14963 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870412.244627-CDS-A-nodosum_M_contig9309:14963..151051680870412.244627-CDS-A-nodosum_M_contig9309:14963..15105Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9309 14964..15105 -
1680870412.261063-CDS-A-nodosum_M_contig9309:15484..156331680870412.261063-CDS-A-nodosum_M_contig9309:15484..15633Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9309 15485..15633 -
1680870412.2730203-CDS-A-nodosum_M_contig9309:15853..160101680870412.2730203-CDS-A-nodosum_M_contig9309:15853..16010Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9309 15854..16010 -
1680870412.2863605-CDS-A-nodosum_M_contig9309:16461..165591680870412.2863605-CDS-A-nodosum_M_contig9309:16461..16559Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9309 16462..16559 -
1680870412.3031778-CDS-A-nodosum_M_contig9309:16822..169391680870412.3031778-CDS-A-nodosum_M_contig9309:16822..16939Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9309 16823..16939 -
1680870412.3141193-CDS-A-nodosum_M_contig9309:17840..178941680870412.3141193-CDS-A-nodosum_M_contig9309:17840..17894Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9309 17841..17894 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9309.1.1

>prot_A-nodosum_M_contig9309.1.1 ID=prot_A-nodosum_M_contig9309.1.1|Name=mRNA_A-nodosum_M_contig9309.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=239bp
MGICSSSMSEEEKEAAKKTKEVEAANAAAFQKEQEKVKLLLLGAGESGKS
TVFKQMKILHGTVSLEERKQITPVVCNAIMSMKVLVEQAGISITSHLLAN
FQENVKCKEAFEMVRDCDEGAVIDMTLGQAIKDVWEDEAMQRVWARRAEY
QIVESVKFYFNEMDRIMQDDFMATQQDILYSRVRTSGIVTERYEIDGTMF
EMYDVGATERAEEMDSLLRQRHHDYLCRCALRVRPEPV*
back to top

mRNA from alignment at A-nodosum_M_contig9309:12921..17894-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9309.1.1 ID=mRNA_A-nodosum_M_contig9309.1.1|Name=mRNA_A-nodosum_M_contig9309.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4974bp|location=Sequence derived from alignment at A-nodosum_M_contig9309:12921..17894- (Ascophyllum nodosum dioecious)
ATGGGGATCTGCTCGAGCAGTATGTCGGAAGAGGAGAAGGAAGCGGCGAA GAAGGTGCGTGCGTGACGTCTCCTGCCGCGTACGTCTCTCGTGCACATAC CTCTCACCGCAGCATGCGCGCCCATTCATGCAAACCGCCAGCTTCTGCTC GATTTCCCCTTGTCGTATTCTTGCTCTCTGTATATCCGTCCATACGTGCT TGCGGGATTGTTGAATATTCATTATTGACGAGTGCTTACGCACTTTGCAG TGCGTATATTAGCGTTGCTACGGAGAGGAAAACTGTTTGCATGTTCCGCG TGATTGCGTGCTTGCACTGTGTGCGTGCTTGCACTGTGTGTTCTAAGAGT GACGGGGTTAATTTTTCTGTTTTAGTATTGAGATTTTTGCTTTCGAAGTA TATGATAAACATAAGCATATGATTGCGTGGGCGCAGCGTGTTTCTGCGCA CCGCCTTGTGCGTGCCGGTGTCTGAGACGGCCGTGCGTATCCGATTGAAA TCGAGGCCCCTGTGAATCCGATCGCGCGAGGGCGATCTCAGGCAAAAATA GTCACGGACAAACGAGCGACGCGTTTCTGTGTGCTTGGCATTAAAAATAC GGCTAGAGAGATAGTTTAACACCGTCACCGAGTTTCAAAACGTAAAAGTG ACTTCACTATTGGACTCGAGCTGTCTTATCCCAGAGCGTTGCTCCAGCCA CATCAAACAGACGCTCCGAGAACGAAAATGAAGTAGATCGAACGCACCAT AGTATGTATGGTGCACTTCATCACTGCTTGTTAATCTCAACTTTCTTCGA TGCCCACGCGCCTGCGCGCCGTGTTCAAACCCTCTTGCGCTATTTTTTTG CTATCGGTGGTTGGTTCTGCTGCGCTGCGCCGTGCCACTCCCTCTAACGC TATTCGGCGAACATCGGGGATCCGCGGGGGTCGACGGTGGCGGTGCTTTG CGCAGACGAAGGAGGTAGAAGCAGCCAATGCGGCGGCATTCCAGAAGGAG CAAGAGAAGGTTAAGCTCCTCCTCCTGGGGGCAGGAGAATCAGGCAAATC CACCGTTTTCAAGCAGATGAAGGTGACTCTCGCCAAGAGCCGCCCTTGTC GAGATTAACTCCGTACTCCGATCGATTTCAATCTGTTGGATGTTGGTAGC CAATAACCCTACTCTATTTGGTGCCGACCTGTCCAAAATACCCTCCCTAT ATTTTGTAGTTTAACCGGTGTCGTAAGTTTCTTTTCTCTTAGTCATAGCT TGTTTGGTGGTTCGTTTGTGTATGTGTTAATGTGTTTGTGTGTGTGCGTA ATGTCGAAACATATGCGTGCGGATGACACTAAAAGATCCTACACGGAACC GTGTCTCTGGAGGAGAGGAAGCAAATCACACCCGTTGTCTGCAACGCCAT CATGAGCATGAAGGTTCTCGTGGAGCAGGCGGGGTCTTAGGAGAGAGGTG CGGTTGATGCTCTCCCTCGTTTCTGGCTCTCTTTTGAAGAAGAGTCGACA AACAGGGCAAAGGCTTGAGCTATACCCATATGTAGGTTAATAGAACATCT AGCGCTTGATAGAAGATCTGGCTTTTGCGGTATAAAGCGAGGTAGACGCT GTCCCCCTCCCCCCCCCCTACCCGCAAGAATCAAATGTTCCGCTTGCTTA ACGAGATACGATAAACTACTGGTGTTTCGGGAGCGTTGTACGAAGTCTAA CGGAAGATTTGCACCTACACATCCGGAGAGCTATTAGTCCCCTTGGATCT TGTACCACGGAGCGTTGCTTTAACCTTATTCATGACATGGATCACCAAGC GTCGTCGATCCCCTCGCAGTACATTGGCTCCCGGTGTACTCCAGGGCTGT ATCACCGATAAAAACAATGTTACGGGAACGCTAGCATTTCCATCACCTCT CATCTACTTGCGAATTTTCAGGAAAACGTGAAGTGTAAGGAGGCATTCGA GATGGTAAGGGACTGCGACGAGGGCGCGGTGATAGACATGACCCTGGGCC AGGCGATCAAGGATGTCTGGGAGGACGAGGCCATGCAGAGGGTACGAGCG TTCGCGTTAACCCCTGTCGGGAAAACACTTAAAAATTACCGTTCTTAGAT CTGGTCAGCCTGGTCTTCTACTCCATATAAATTAGCAGGCTGTTGTGAGC GCAGGCGGGTGACACAACCGATATTGCATTCACCCTACAGCAGCCATGGG TAACTGCTTTCCTTCTCTTTCCCTCCCTTTTCCCCCCTGAATATTCACGC CTCCTTACCAGGTCTGGGCGCGGAGAGCGGAGTACCAGATTGTAGAGTCT GTCAAGTTCTACTTCAACGAGATGGACCGCATCATGCAGGACGACTTCAT GGCCACCCAGCAAGACATTCTCTATTCTCGGGTCAGGACCTCCGGCATTG TCACGGAGCGGTGAGCTCTCGCGCGCTCGAGAGACTTGAGAATAAGGCAT CCTGGCTGCATGTGGAAACCTTTGTTTGGTTTTGGCCTCTGAAGCAGGAA GAGATGGCGAAGAAAGCGTGTCCCAAATTATCGCCGGAGAAACAGGAATA GAGACTCCATTCGCTCGTGTGGTGGGCATAAGTGGACACCGCTTCTTGCA AGGTTATTGTTTTTGTGAATCAACACAGACACGTGTGTATGACCGAAGGT TCAGTGCGGTACACATGTATGTGTGCGCGGACTGTATGCTTGGAGTAATC CCGTTGTATTTTCTTTGTGAAGCTTTAAATCTATGTCGCCAAAACCTTTC AAATTCTTTTGGACGCTGTTTTCTTCCTTTTGGTGGAAGATACGAGATCG ACGGTACGATGTTCGAGATGTACGACGTGGGGGCAACGGAACGAGCGGAA GAAATGGATTCACTGCTTCGACAACGTCACCATGATTATCTTTGTCGCTG CGCTCTCCGAGTACGACCAGAACCTGTTTGAAGACGCAACCACCAATCGG TGCGACGCCTCCCCCCCTTGCCTTGAAAAAGACACGAGTCAAAGTCCTTT TTTTGTCGGTTTCGTTCTATCTCCATTCCATGTCGTTCCTCGCAATATAC TCCGATGGATTTGGTACCAGATAACAGGTACCATTTTACAGTTTTTCCGC TTGTTGGAGACTTGAAGGAAAAGACGTCGATTCACTAAACATAACTCGAA TAGACTAATAGTAATAGTTAGTGCATAACCATTGCTCGTAGGGCAGGAGA GGTAAGCCTGCTACCCTAACCCTTTCCGTTTTCCTAGAAGGACCGATTGT CTCACTCGAAATGCGTTCTGGAAGTGATCCATGTGGAAGGGGAATGGGCT GGATCTGGATGTCAATATTTGGAACTGGCGTATTCCCGCCGCGGTTCGTC GGAAGCGAGGACGTTTTGTGTGTTAGTCCTTTGACGGCGGGAACCCTCGA AAAAATTGGCCTGCGTTGTTTGAGGAAGTTCCCCAGTTTCGGTTCTGTAC CAGGTTCCCCCGTGATGCAGACCCGCTCTCTTTCCCGCCCGTCGATCGTT TTCATTCTTACGGTTTTGTTCTGTCTTTTTCTCGACAACGCGCGATGATG TATATCTTGCCCCGGGCCGCGATGGCGAAAACGGTTTCGGGCGGTGACGA CAGACTGGTGGAGTCGATGGATTTATTCAACGAAATCTGTAACAACCGTT ACTTCAGCGAATCGTCAATGATCCTGTTCCTTAACAAAAAGGATCTCTTC GCCGACAAGATCAAACGGGTGCGTCGGACTCAAATATGTAGCGCTCAAAG AATCTGAAGCTACTATAGCTCCAAGCTTACATTTACTTTCCTCAGGTCGT GACGTTAGGCTCCTTCGTTAGTTGGAGTCTCGAAACCTGCCTTAAGGGCT ATTCCACACACTCGAGTTGACCCCAACTGAGCTGGTAAGTTGCACTATCC CTAGAGGCAAAGTACCCTTAATAGAACTACTAATATCATTTGACCCATAT TCTTAGAGCTGCCAATCCACGCCCTTCGCGCCGACTGTCCACCCTTGACC CAGGAGCCACTTAGTTCCACCCGCATGAAACGCTTGAAACCGGTTTTCTT TCGTCAATTTATTTTCATGCTCGACTTCCTTACCGCCCGTACTCACTCAC TCTTGTCGGAGGCCCAGCGCTGCGAATTGGAGCAATTCGTTCTTATCCGG CCACGGTACGGCGCTTGCCGTTGTCACGGGTGGTTTCCACACCTTTGTAT CTTTGGCTACCGATGTTGAGAGATTCATAGTACTTCGATACTAGTTTTGC AGGATATACCACTCTGCTGACGAGGTGTTTGTGCGGCGAGAGCTCCGCGC CGCGGAAATCCTCAATTCTCTACAGCTTTTAGCTTAAAAAAAGAAGGAGA ATAATCGATCACGGGGACCACGGCGACTAAAAGTAAACAAATCACGCTTT GCATTCACGCGCGCGCGTGTATGTATATCTCAGGTGGACATCAAGAGCGT GGAAAGGTGGTCGGACTTCCCAGGAGAGCCGGGAGATGAGGAGGCGGGGA AGCAATATTTCCTGTCGCAGTTTCTTAAGGTGAAGAAGGGTGTAATGAAC AAACTACAAAGGAATTCATAGGGGAATCCCCGGCGAATGATGTATCGGGT AGGATCATGGGTCCTAACATATTAACCACTAAGTTGTGAGATCTCGATAG AGATGCATCTATTTGTTACTCTCTTTCGCCACCTCCCCGCCATCCCTGCA CGTCTCAATTCTGCACGTCGACCGGTCTGTACGCCCGGTGAATGCTCTCG CATTCCTTGCTGAGCCGAGAAACTTTCAGCTCCGCTTCGCCCCCGTTTAT GCCCCCCCCCCCTGTGGCCGAACTGATGATCTGCCTTCCTAGTTCAACAA AAACCCGGACCGGGAAGTGTACCACCACGTCACGTGTGCCACCGACACCG AAAACGTGGGCTTCGTCTTCAACTCATGCAAGGACGTTATCTTGAGAAGC AACCTTAAGGACTCGGGCTTCGTA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig9309:12921..17894-

>mRNA_A-nodosum_M_contig9309.1.1 ID=mRNA_A-nodosum_M_contig9309.1.1|Name=mRNA_A-nodosum_M_contig9309.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=717bp|location=Sequence derived from alignment at A-nodosum_M_contig9309:12921..17894- (Ascophyllum nodosum dioecious)
ATGGGGATCTGCTCGAGCAGTATGTCGGAAGAGGAGAAGGAAGCGGCGAA
GAAGACGAAGGAGGTAGAAGCAGCCAATGCGGCGGCATTCCAGAAGGAGC
AAGAGAAGGTTAAGCTCCTCCTCCTGGGGGCAGGAGAATCAGGCAAATCC
ACCGTTTTCAAGCAGATGAAGATCCTACACGGAACCGTGTCTCTGGAGGA
GAGGAAGCAAATCACACCCGTTGTCTGCAACGCCATCATGAGCATGAAGG
TTCTCGTGGAGCAGGCGGGCATTTCCATCACCTCTCATCTACTTGCGAAT
TTTCAGGAAAACGTGAAGTGTAAGGAGGCATTCGAGATGGTAAGGGACTG
CGACGAGGGCGCGGTGATAGACATGACCCTGGGCCAGGCGATCAAGGATG
TCTGGGAGGACGAGGCCATGCAGAGGGTCTGGGCGCGGAGAGCGGAGTAC
CAGATTGTAGAGTCTGTCAAGTTCTACTTCAACGAGATGGACCGCATCAT
GCAGGACGACTTCATGGCCACCCAGCAAGACATTCTCTATTCTCGGGTCA
GGACCTCCGGCATTGTCACGGAGCGATACGAGATCGACGGTACGATGTTC
GAGATGTACGACGTGGGGGCAACGGAACGAGCGGAAGAAATGGATTCACT
GCTTCGACAACGTCACCATGATTATCTTTGTCGCTGCGCTCTCCGAGTAC
GACCAGAACCTGTTTGA
back to top