mRNA_A-nodosum_M_contig9301.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9301.1.1
Unique NamemRNA_A-nodosum_M_contig9301.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig9301.1.1 vs. uniprot
Match: A0A6H5KEM7_9PHAE (Tafazzin family protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEM7_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 3.580e-40
Identity = 97/214 (45.33%), Postives = 124/214 (57.94%), Query Frame = 1 
Query: 1045 FWRTGAKKMRWAMCTDDIT-TPACLKKILIAGKPCPSSAAVGWSSPSSSVFPEAREG-HWGHIFAEGSIRQPWRFSRESRYLRTSRPDRSTSVAQRESTDGTPDLPH--RHAPGGAGNPGPEGRPRKLVKKLPNIGRKILVYVGDPIDVGPVVRKCRERMA-TRHLPWTKRLSRAEIECHQEIAAFVRDHVLKLEEIARRLLWQRTGDLCPYAV 1671
            FWRTG K+MRWA+CTDDI      LK I  AG+  P     G   P    F +  EG  WGHIFAEG+IRQPWRFSR    L   +      + + +       + H   H           GR  KL+K +PN GR + VYVG+PIDV P++ KCRER+   R+LPWTKR S  E+ CH+EIAA++R+HVLKLE +AR+  +    D  PYA+
Sbjct:  233 FWRTGRKRMRWALCTDDIYYAHPVLKNIFDAGRTLPIKRNRGMEQPLFKAFFQKLEGGEWGHIFAEGAIRQPWRFSRGEPILGDFKAGIGRLLLRSKDPPLVLPMYHIGMHQIASEAPTHKRGR-GKLLKIMPNFGRTVRVYVGEPIDVAPIIEKCRERIGDVRNLPWTKRSSMEEVACHREIAAYIREHVLKLEAVARKDYYGDDPDASPYAL 445
[Close]
BLAST of mRNA_A-nodosum_M_contig9301.1.1 vs. uniprot
Match: D8LB90_ECTSI (Tafazzin family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB90_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 6.040e-13
Identity = 43/82 (52.44%), Postives = 50/82 (60.98%), Query Frame = 1 
Query: 1045 FWRTGAKKMRWAMCTDDIT-TPACLKKILIAGKPCPSSAAVGWSSPSSSVFPEAREG-HWGHIFAEGSIRQPWRFSRESRYL 1284
            FWRTG ++MRWA+CTDDI      LK I  AG+  P     G   P    F +  EG  WGHIFAEG+IRQPWRFSR+   L
Sbjct:  224 FWRTGRRRMRWALCTDDIYYAHPVLKNIFEAGRTLPIKRTRGMEQPLFKAFFQKLEGGEWGHIFAEGAIRQPWRFSRDEPIL 305
[Close]
BLAST of mRNA_A-nodosum_M_contig9301.1.1 vs. uniprot
Match: A0A6H5K8C3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8C3_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.180e-12
Identity = 81/236 (34.32%), Postives = 110/236 (46.61%), Query Frame = 2 
Query:    5 GTGAAADYVRRAV*CMLYADDACIVLRSPRGLVRTWK*------------TQKAAEPSL*PCRRRRQTMCMPPPRTPRTMMRVEAARQIYEQVQSFAYLRSL-DRNPDTSA---LKSPGDSRMLNAHQAIPR*ALDQPKAA------LSKPELKEAIDTFCTDDEVRGPSPEHYAKLHTVHHRVLLRIIGAQRKRPDHQLTSSNRTLEITRCESIE-TAWRTRRLLWVGG--THPD 637
            G     D VRRAV  MLYADDA +V RS  GL R                ++K  E  L   + +  T   P P  P T   +EAA Q Y Q   F YL  L + + D +     +S G    L  +    R   D+P+A       L + E  EA+   C       P   HY  L ++HHR+LLR+IG +RK+  ++  S  +TL+   C+S+E T W+ RRLL+ G   T PD
Sbjct:  388 GEETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLT---IEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYG---RELFDRPQAPFRLKIRLLQAEAMEALLYGCM---TWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSCAQTLKKVECQSVEATIWQ-RRLLFAGALATQPD 613
[Close]
BLAST of mRNA_A-nodosum_M_contig9301.1.1 vs. uniprot
Match: A0A6H5JBT6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT6_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.690e-12
Identity = 77/237 (32.49%), Postives = 105/237 (44.30%), Query Frame = 2 
Query:    5 GTGAAADYVRRAV*CMLYADDACIVLRSPRGLVRTWK*TQKA-AEPSL*PCRRRRQTMCM---------PPPRTPRTMMRVEAARQIYEQVQSFAYLRSLDRNPDTSALKSPGDSRMLNAHQAIPR*A---LDQPKAALSKPELK------EAIDTFCTDDEVRGPSPEHYAKLHTVHHRVLLRIIGAQRKRPDHQLTSSNRTLEITRCESIETAWRTRRLLWVGGTHPDEWGAVAK 658
            G     D V+RAV  MLYADDA +V RS  GL R      +   E  L    ++ +T+ M         P P  P T   +EAA Q Y Q   F YL  L    +   L    + R   A   + R      D+P+A      LK      EA+D          P   HY  L ++HHR+LLR+IG +RK+  ++  S  +TL+   C+S+E   R RRLL+ G       G + K
Sbjct:  132 GEETPLDRVQRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRKGQADTSQPAPPPPLT---IEAAGQKYAQKTEFRYLGGLVN--EHGDLTRENNYRSRGAWACLRRYGRELFDRPQAPFR---LKIRLLQAEAMDALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPK 360
[Close]
BLAST of mRNA_A-nodosum_M_contig9301.1.1 vs. uniprot
Match: A0A6H5KBT2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT2_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 7.500e-12
Identity = 76/240 (31.67%), Postives = 106/240 (44.17%), Query Frame = 2 
Query:    5 GTGAAADYVRRAV*CMLYADDACIVLRSPRGLVRTWK*------------TQKAAEPSL*PCRRRRQTMCMPPPRTPRTMMRVEAARQIYEQVQSFAYLRSL-DRNPDTSA---LKSPGDSRMLNAHQAIPR*ALDQPKAA------LSKPELKEAIDTFCTDDEVRGPSPEHYAKLHTVHHRVLLRIIGAQRKRPDHQLTSSNRTLEITRCESIETAWRTRRLLWVGGTHPDEWGAVAK 658
            G     D VRRAV  MLYADDA +V RS  GL R                ++K  E  L   + +  T   P P  P T   +EAA Q Y Q   F YL  L + + D +     +S G    L  +    R   D+P+A       L + E  EA+   C       P   HY  L ++HHR+LLR+IG +RK+  ++  S  + L+   C+ +E   R +RLL+ G       G + K
Sbjct:  265 GEETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLT---IEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYG---RELFDRPQAPFRLKIRLLRAEAMEALLYGCM---TWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQMLKRVECQRVEATIRQQRLLFAGALERQSDGRLPK 495
[Close]
BLAST of mRNA_A-nodosum_M_contig9301.1.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.190e-11
Identity = 73/225 (32.44%), Postives = 100/225 (44.44%), Query Frame = 2 
Query:   50 MLYADDACIVLRSPRGLVRTWK*------------TQKAAEPSL*PCRRRRQTMCMPPPRTPRTMMRVEAARQIYEQVQSFAYLRSL-DRNPDTSA---LKSPGDSRMLNAHQAIPR*ALDQPKAA------LSKPELKEAIDTFCTDDEVRGPSPEHYAKLHTVHHRVLLRIIGAQRKRPDHQLTSSNRTLEITRCESIETAWRTRRLLWVGGTHPDEWGAVAK 658
            MLYADDA +V RS  GL R                ++K  E  L   + +  T   P P  P T   +EAA Q Y Q   F YL  L + + D +     +S G    L  +    R   D+P+A       L + E  EA+   C       P   HY  L ++HHR+LLR+IG +RK+  ++  S  +TL    CES+E   R RRLL+ G       G + K
Sbjct:    1 MLYADDAGVVSRSAEGLARMMTLIVEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLT---IEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYG---RELFDRPQAPFRLKIRLLQAEAMEALLYGCM---TWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPK 216
[Close]
BLAST of mRNA_A-nodosum_M_contig9301.1.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.590e-11
Identity = 76/240 (31.67%), Postives = 107/240 (44.58%), Query Frame = 2 
Query:    5 GTGAAADYVRRAV*CMLYADDACIVLRSPRGLVRTWK*------------TQKAAEPSL*PCRRRRQTMCMPPPRTPRTMMRVEAARQIYEQVQSFAYLRSL-DRNPDTSA---LKSPGDSRMLNAHQAIPR*ALDQPKAA------LSKPELKEAIDTFCTDDEVRGPSPEHYAKLHTVHHRVLLRIIGAQRKRPDHQLTSSNRTLEITRCESIETAWRTRRLLWVGGTHPDEWGAVAK 658
            G     D VRRAV  M YADDA +V RS  GL R                ++K  E  L   + +  T+    P  P T   ++AA Q Y Q   F YL  L + + D +     +S G    L  +    R   D+P+A       L + E  EA+   C       P   HY  L ++HHR+LLR+IG +RK+  ++  S  +TL+   C+S+E   R RRLL+ G       G + K
Sbjct:  338 GEETPLDRVRRAVWGMSYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTISQTAPPPPLT---IKAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYG---RELFDRPQAPSRLKIRLLQAEAMEALLYGCM---TWSPLSRHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPK 568
[Close]
BLAST of mRNA_A-nodosum_M_contig9301.1.1 vs. uniprot
Match: A0A6H5K038_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K038_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.710e-10
Identity = 69/209 (33.01%), Postives = 94/209 (44.98%), Query Frame = 2 
Query:   50 MLYADDACIVLRSPRGLVRTWK*------------TQKAAEPSL*PCRRRRQTMCMPPPRTPRTMMRVEAARQIYEQVQSFAYLRSL-DRNPDTSA---LKSPGDSRMLNAHQAIPR*ALDQPKAA------LSKPELKEAIDTFCTDDEVRGPSPEHYAKLHTVHHRVLLRIIGAQRKRPDHQLTSSNRTLEITRCESIETAWRTRRL 610
            MLYADDA +V RS  GL R                ++K  E  L   + +  T   P P  P T   +EAA Q Y Q   F YL  L + + D +     +S G    L  +    R   D+P+A       L + E  EA+   C       P   HY  L ++HHR+LLR+IG +RK   +Q  S  +TL+   C+S+E   R RRL
Sbjct:    1 MLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLT---IEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYG---RELFDRPQAPFRLKIRLLQAEAMEALLYGCM---TWSPLSGHYQTLRSIHHRLLLRVIGYKRKSDTYQQLSYAQTLKRVECQSVEATIRQRRL 200
[Close]
BLAST of mRNA_A-nodosum_M_contig9301.1.1 vs. uniprot
Match: A0A6H5L6U6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U6_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.980e-10
Identity = 69/222 (31.08%), Postives = 96/222 (43.24%), Query Frame = 2 
Query:   50 MLYADDACIVLRSPRGLVRTWK*------------TQKAAEPSL*PCRRRRQTMCMPPPRTPRTMMRVEAARQIYEQVQSFAYLRSL-DRNPDTSALKSPGDSRMLNAHQAIPR*ALDQPKAA------LSKPELKEAIDTFCTDDEVRGPSPEHYAKLHTVHHRVLLRIIGAQRKRPDHQLTSSNRTLEITRCESIETAWRTRRLLWVGGTHPDEWGAVAK 658
            MLYADDA +V RS  GL R                ++K  E  L   + +  T   P    P T   +EAA Q Y Q   F YL  L + + D +   S          +   R   D+P+A       L + E  EA+   C       P   HY  L ++HHR+LLR+IG +RK+  ++  S  +TL+   C+S+E   R RRLL  G       G + K
Sbjct:    1 MLYADDAGVVSRSEEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAAPPPLT---IEAAGQNYAQTTEFRYLGGLVNEHGDLTREISHRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCM---TWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLLAGALARQSDGRLPK 216
[Close]
BLAST of mRNA_A-nodosum_M_contig9301.1.1 vs. uniprot
Match: A0A6H5KQ16_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ16_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.730e-9
Identity = 68/225 (30.22%), Postives = 98/225 (43.56%), Query Frame = 2 
Query:   50 MLYADDACIVLRSPRGLVRTWK*------------TQKAAEPSL*PCRRRRQTMCMPPPRTPRTMMRVEAARQIYEQVQSFAYLRSL-DRNPDTSA---LKSPGDSRMLNAHQAIPR*ALDQPKAA------LSKPELKEAIDTFCTDDEVRGPSPEHYAKLHTVHHRVLLRIIGAQRKRPDHQLTSSNRTLEITRCESIETAWRTRRLLWVGGTHPDEWGAVAK 658
            MLYADDA +V RS  GL R                + K  E  L   + +  T   P P  P T   +EAA Q Y Q   F YL  L + + D +     +S G    L  +    R   D+P+A       L + E  EA+   C       P   HY  L ++HHR+LLR++G +RK+  ++     +TL+   C+S+    R RR+L+ G       G + K
Sbjct:    1 MLYADDAGVVSRSAEGLTRLMTIIVEVFGEFGLAVSGKRTETLLMRAKDKPTTTSQPAPPPPLT---IEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYG---RELFDRPQAPFRLKIRLLQAEAMEALLYGCM---TWSPLSGHYQTLRSIHHRLLLRVVGYKRKKDTYRQLGHAQTLKRVECQSVAATIRQRRILFAGALTRQPDGRLPK 216
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9301.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5KEM7_9PHAE3.580e-4045.33Tafazzin family protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB90_ECTSI6.040e-1352.44Tafazzin family protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8C3_9PHAE1.180e-1234.32Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JBT6_9PHAE1.690e-1232.49Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KBT2_9PHAE7.500e-1231.67Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JAH7_9PHAE1.190e-1132.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KS82_9PHAE4.590e-1131.67Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K038_9PHAE1.710e-1033.01Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L6U6_9PHAE6.980e-1031.08Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ16_9PHAE1.730e-930.22Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9301contigA-nodosum_M_contig9301:12498..18455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LB90
PFAMsAcyltransferase
Model size2254
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00037
KEGG koko:K13511
KEGG ReactionR09037
KEGG Pathwayko00564,map00564
Hectar predicted targeting categoryother localisation
Exons8
Evalue6.55e-11
EggNOG OGsKOG2847@1|root,KOG2847@2759|Eukaryota
Descriptioncardiolipin acyl-chain remodeling
Cds size612
COG categoryS
BRITEko00000,ko00001,ko01000,ko01004
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9301.1.1prot_A-nodosum_M_contig9301.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9301 13072..15461 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870411.9912093-UTR-A-nodosum_M_contig9301:12497..130711680870411.9912093-UTR-A-nodosum_M_contig9301:12497..13071Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9301 12498..13071 -
1680870412.072403-UTR-A-nodosum_M_contig9301:15461..154771680870412.072403-UTR-A-nodosum_M_contig9301:15461..15477Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9301 15462..15477 -
1680870412.0832174-UTR-A-nodosum_M_contig9301:16301..164301680870412.0832174-UTR-A-nodosum_M_contig9301:16301..16430Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9301 16302..16430 -
1680870412.0966136-UTR-A-nodosum_M_contig9301:17532..184551680870412.0966136-UTR-A-nodosum_M_contig9301:17532..18455Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9301 17533..18455 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870412.0027113-CDS-A-nodosum_M_contig9301:13071..132481680870412.0027113-CDS-A-nodosum_M_contig9301:13071..13248Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9301 13072..13248 -
1680870412.0134182-CDS-A-nodosum_M_contig9301:13764..138291680870412.0134182-CDS-A-nodosum_M_contig9301:13764..13829Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9301 13765..13829 -
1680870412.0257335-CDS-A-nodosum_M_contig9301:14165..142761680870412.0257335-CDS-A-nodosum_M_contig9301:14165..14276Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9301 14166..14276 -
1680870412.0350308-CDS-A-nodosum_M_contig9301:14580..146481680870412.0350308-CDS-A-nodosum_M_contig9301:14580..14648Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9301 14581..14648 -
1680870412.0457907-CDS-A-nodosum_M_contig9301:15004..150771680870412.0457907-CDS-A-nodosum_M_contig9301:15004..15077Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9301 15005..15077 -
1680870412.0561469-CDS-A-nodosum_M_contig9301:15343..154611680870412.0561469-CDS-A-nodosum_M_contig9301:15343..15461Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9301 15344..15461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9301.1.1

>prot_A-nodosum_M_contig9301.1.1 ID=prot_A-nodosum_M_contig9301.1.1|Name=mRNA_A-nodosum_M_contig9301.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=204bp
MRWAMCTDDITTPACLKKILIAGKPCPSSAAVGWSSPSSSVFPEAREGHW
GHIFAEGSIRQPWRFSRESRYLRTSRPDRSTSVAQRESTDGTPDLPHRHA
PGGAGNPGPEGRPRKLVKKLPNIGRKILVYVGDPIDVGPVVRKCRERMAT
RHLPWTKRLSRAEIECHQEIAAFVRDHVLKLEEIARRLLWQRTGDLCPYA
VAE*
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mRNA from alignment at A-nodosum_M_contig9301:12498..18455-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9301.1.1 ID=mRNA_A-nodosum_M_contig9301.1.1|Name=mRNA_A-nodosum_M_contig9301.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5958bp|location=Sequence derived from alignment at A-nodosum_M_contig9301:12498..18455- (Ascophyllum nodosum dioecious)
CGATGGGACCGGAGCCGCTGCGGACTACGTTCGTCGTGCGGTGTAGTGTA
TGCTGTACGCGGATGACGCCTGCATTGTTTTGCGATCGCCGCGGGGCTTG
GTTAGGACATGGAAGTAAACGCAGAAGGCTGCCGAGCCTTCGCTTTAACC
GTGTCGGCGAAGAAGACAGACTATGTGCATGCCTCCACCGCGTACACCGC
GGACGATGATGCGAGTCGAAGCGGCCAGGCAAATCTACGAACAGGTACAA
TCGTTCGCCTACCTAAGGTCGCTGGACCGAAACCCTGATACGTCCGCGTT
GAAATCGCCAGGGGACTCGCGCATGCTGAATGCGCATCAGGCGATACCCA
GGTGAGCTCTAGACCAGCCGAAAGCGGCGCTTTCGAAACCCGAATTAAAG
GAGGCAATTGACACCTTTTGTACGGATGATGAAGTACGTGGACCTTCGCC
AGAGCACTACGCTAAACTCCACACCGTACACCACCGGGTTTTGCTTCGCA
TCATCGGGGCACAGCGCAAGAGACCAGACCATCAGTTGACTTCATCCAAC
CGTACCCTCGAGATAACCCGGTGTGAGAGCATTGAGACAGCGTGGCGCAC
GAGAAGGCTGTTGTGGGTGGGGGGCACTCATCCTGATGAGTGGGGGGCGG
TTGCCAAAACGAATCATGTTCGGAAATGTTGAGGGTGCAGTACGGAGAGG
ACGGGTCGGGAAGGAGAAAGAGTGGATCGATTGCATGCAGAGCGATGTCC
GGGCATTTGGCATAGCGGGGACTGAAAGCGACGGCGTTGGGGGCAGAGGT
GGTTGAGACGATCACGGAGAGTGGGCGAAGGTTTATGGCCGCGTGAGGAA
ATAAGTGAAAGACGAGGCTAGACATCGCTAGAAGAAAGAGGCAACGAGAC
TGGGGGAAGTTGTAATCGTGCACGTAAGTGTAGAACCTGAAAAGCGACAT
CAGTTGGCCTAGTCGACGAGTCAAAAAGAATCCTGTACGAGCACGAGACG
GACCGAGATCTCGCGTAGCGCCCAGGCATGTAGATGCTTCTGGCCATCTA
TTATTTTTGTTCTCTATTGTAAGCGCCCTGGTTTTATTTTATTTTATTTC
TCCGTAGGAGCAGCGTGGGGGGCCGCCGCTAGACTTCTCCCGCGTAGCAA
ACCACGAGCGGGATTGGCCACCGTGTAGAGAAGTTTTTTCGGGTGGCAAC
CAATACGCTCAATGTGAGAAACAACAACAACTGTACTAGCGGGAAATACT
TTACCCATGCATAAGTACACTGTTGTACTGCCGAAGGCAGTGGTACAACA
GCACTACAGTATACTATACTGTATTAGTAGTGTCAGATACGTGGTAACCG
TGTCTGTTAATGGCCTCCTCGACATCAAGATTATAGTATTATAGCTACGA
GAGTATAGTATCAATATCAATATTGCCATTAAATTGTATGTTATTGAGTA
ACAATGCAACATACCCAGATTCAGCCTGAGTGGAGAATGAGCGAACTGAC
GCGGGACGAGACGGCTGAACCTTGTCTCGCCAGACCAAGTTCTCAGGCAC
GAACGGGGACCGGGGAAAATAATTTCTCGTTCAGCTGGCCACGAGCAGGA
TTGGCTACCATACCAGTTCGATCCATACTCCACATGTGATGACCATACAA
ACCTGTACTGATATCTACGTGCGAGTTCTCCTACTTGTTGTACATACTGT
ACTGTAGTAGCTAGTAGCTACCAGATGTAGTAATATTAATAGCCTAATCT
GGATTTAGCCTTCACCAGACGCACCGCTTAGCCAGCTCTGGCCATGACGC
GCTGAACCTTTGATAAAACTTGACGAGCACAACGGACGAAATGTCATCAC
CGAAATGTTGTCACTGAAATCTCCCTTTCGACACCCCATCCTCTATACTG
TACTGTACCGTAAATATATTGTAAATATGCTGTGCAAACATGTCCGATCG
AGCACGGGTCCCCAGAAACTTGTACTATATAACGTATGATATGTACTGTA
TAATGTATAATGTTGACGAATCCAGTTGAGCGCCGTAACCAGGAAAAGCT
TGTGGAGGCCGTCTTGAACCGGGGAGACAGGGCCCCTGACCGTGGTAACG
CGCTGTCTGTTTACGACGATCCTGGCTCTGTGGCTGCGCTCATTCCTTCT
GGAGGTGAGACGGGAACAAGCAGAGCATTACGGCATTTGTATAGTGAAAA
CTGTGTAATTGTAAACTCGATCTTCCCTGATTTTCAAAGTACTTCAGTAG
TGTATTTATATGTGCTGACAATAGTGGAAAAGAAAGTACTGCGGTAGTGC
ATCAAATGCATGTTGTACTCACGAGTGCACTGTTTCTTTTCCACTTTCTT
ATCTTACCATATTGTATCATATCGTGTCGGTCTTCTCGTCGAAGATATTT
GATATTTACTGTACCTGCAATAAGGGTTACAGTGTTCAATTGTTGAATTA
CACCAGGTGCGAGAGAGGGGGAGGCAAGCCAGAGCCGCTATTTTTTTGAA
CCTATCGTATCGTAGAGCAGTCAGCCGTTGCTATTGGTCAGCCCTTTTTC
ACAGAGAGGCGTATTTTTGAGGGCTACCAAGCCCCGGCACTGTTGGTTCA
CGTGCTATTCATAGAGAGGTATTAAATAATGTACAACGCTGAAGTTTATC
TTCCATCTACTATGCATTAATACGGTACACCTTCTGTAGCATTTATAGTC
CTGGACCCAACCTTACAAAGAAGGCATTGTTTTGTCGGGGGCGGGGCAGG
AGTGTAAAACTTGATTCGGTACCAGCAAGAGAGGCACGCCGGGTTTTTTG
CTTAAAAAACGCTGCAGACACAGGAACCTTTAGACTACGCATCCATGCCC
TATTTAATACGAAGTGTTCGCTGCTTACCCAGCGGGCTCACATAAAGTCT
ACGTTGCGCGTCCGTTGCGTTTCAATACTCCCATGTGTTTGTGTACGTGC
ATTTGTGTTTTGCCTCGAGCATTGACTGAACGGGCGCCAAGAAGATGCGA
TGGGCTATGTGCACGGACGACATCACAACGCCAGCCTGCCTCAAGAAAAT
CTTGATCGCCGGAAAACCCTGCCCATCAAGCGCAGCCGTGGGATGGAGCA
GCCCCTCTTCAAGCGGCTTACGCCGGCGGCGAGACGCTACGCCAGTGGCC
TGCATACGATTTATACTTACCGTACCCGCGGCGAGGAATATACTGTGTGT
CGAAAGCGAGCCCCTGACGCAGCGGGCAGAGGAGGGTAAACAGGTGAAGT
ATGGCGTTCGTTGCCTCTCCTTGCGGCGTCGAGGGGGCGAAATCACCAAG
TTGAATCTAAAATGTTTTTCCTCCCCCTCCCCTTCCCAAAAACGCCGCTT
TATTCACGCACCTATGTTTTCATTGCAGGTGTTTTTCCAGAAGCTAGAGA
AGGACACTGGGGACATATATTTGCCGAAGGGAGCATCCGGCAGCCGTGGA
GGCGAGAACGTCGCGCGTACCCCCGTGATTGCCCCCCGCCAGTCGCGTAA
TGAGTCAATCCCGGGAAATTGGGCGTCATACAGACCGCTTTCATGAAGCG
TTTCGTCCTTCTTCGCCTGCGTCCTCCGCCGAGCGTGTGCGTGACCCACA
CAGCTCGCACGTCTCGACTTGTCCCTGTTTCCATGGAGTTTATCTGTTGT
AGCGTATTTGTCCGGACGGTGTATGTAAGCACGGGTTGACATATACAGGC
ACCGGTCAATACCCAGGGCCGAAACTCGAAGTCAGCAAAACAGCGCGGCA
GATCTATTAAAAAAAAACTTGACTTTACTGCACATCGTGCCATGTGATTG
GTCGCAGGTTCAGCCGGGAGAGCCGATACTTGCGGACTTCAAGGCCGGAT
CGGTCGACTTCTGTTGCGCAGCGAGGTACTTGTATTTAAAAATACACTGG
TAAAAAACTTCAAAAGTTTTCTTTTTCTTCCCCATCCCCTCCCTGTTTAC
TGTATAGAGCTCTCAGAGCTACAACATCGCCACAATATCGCTACAATATC
GTATTATGTCGAGCATTCCCGTTGCATGTGATCAATCAATCAATTGACCA
AACCTATTAATAAACTACTACATAACTACCAGTACATCATAACACAATGG
AGCTCTTCATAAGTTGACCGACCAGGACCACCGAGTGACTTGTCCTTGTT
ACACATGGGGCGCCGTGGTGTCCTTGCAGAATCCACCGATGGTACTCCCG
ATCTACCACATAGGCATGCACCAGGTGGCGCCGGAAACCCCGGTCCTGAA
GGGCGGCCGAGGAAACTCGTCAAAAAGCTCCCCAACATCGGTGAGGATGA
TTTCGCGGGAAAAAGTGTTACATAGAACGTTTGCCTAGAAGTATGGCAGC
TCTCGAGGACAAACACAAGTCCGCACGTCGCGTAGGGTCCCCCTTTTTCA
AAACGCTGCCGCTGTGACAAACCAGGCTCGGTCGGGCTGTCAGGTCGTCG
CGCCTGAGACGTGCGACTGTACAGAGAGTGCACCGCTGCTAGACTAGACT
GCAGCTGGTACACAAAATATATTATTTATAGTATTGTAAAAGTGAGCTAT
GTCTGCAGTGCCCTAACACGATCGCCCCCGCCACACCCCCTACGGCTTGA
CGTCCCGTCTTGTCCTGTCCTGACAGGTCGCAAGATCCTCGTGTACGTCG
GAGACCCCATCGATGTCGGTCCAGTCGTGCGCAAGTGCCGGGTGAGGGCG
GAATAATGTGATACTAGGATGAAATTTCGTGTTTCAGTCACGTAAACATA
CAAATATACTGTATTAAGGAGGCCGTCGAGAGGCCCATCCCCCAACCCTC
TCGAAATGGTAACACGCACCACCGTATGGCTCACGGGGATCGGGTTCACG
GCTTACAGCAGTAGGAAACGTTTCAAGACCACGGTCGACTGCGCACGACA
ACGCTGCTGCTTGAGGTTGACGCAGGTCTGCTCTACTTTTTTAAAGGTAT
CGGTTAAGGTTTTGTTGAGGCTTTATCGAGACTCTTCCTCCTTTCAAACT
GTGCTGTAGGTGGATTGTAAGGCTGGAGAAAGGCGAGCTTCCATTCAAAC
GTAAGATCCTCCTACAGTAAACAGCGGTTGACCATTCTGTCCGTCCGGAG
AGCATTCCATGCCGTCGGTGAGTCGAAATTTCACGCTCGTCTTATTGCTT
CGCGGTTTTGCTCTGTTTTGTTTTGCTTTGTTTTGCCTTGCTCAATAACT
CCAAAAGGAACGGATGGCGACGCGTCACCTGCCATGGACGAAGCGACTTT
CCAGGGCTGAGATAGAGTGCCATCAAGAGATAGCGGCGTTCGTCAGGGAC
CACGTACTCAAGCTGGAGGAGATTGCCAGGAGACTACTATGGCAGAGAAC
CGGAGATCTCTGCCCCTACGCCGTCGCGGAATAGTTCGAAGATGGAAGCG
GTGGAACGGGGCTGTACAGTTCGGTTCACGGTGTAGTTTTGGACACCATC
CGTTCCTTACATCGGTGGACAGTTTTGTACTGTACCATACTGCACCACAA
ACAAACTATTAATAATAGCCGAGACCAGTTTGCTGTGCTTGAGTAGGCGG
GAGACGCGCAAGCTAAGATGCAGATTTTCTAGATGTAATGCTAAAAGTAC
GTAGATCGTAAGTCCATTACAGTAGCTCTAAGCAATACGGGTCGGGGAAG
AAGCATCGCGCGTACTACAAGTACCAAAAAACAGTGCGATTGGGCACCGT
GAGTGTAGCAACGACAACCAACTCTTCCAGTATTGTTTTGATTTGTCTTT
GTCTTGCGCTTATACTACGTAGTTAATGCTCGGCAACACTTCCCTTTGAC
AATTTAACAGGAGTTTAGCACCCCAAGTGGACGCAGAAGCGAGGGCACTC
GTTCGAAGGTGTCGGCATCTCATCACCCCACACCCCCCCATTTTTCCTAT
CGCGCAGAGATATTTTTCAGCGACCTTACGCGAGCAAACGTAACAAACGC
GACCTGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9301:12498..18455-

>mRNA_A-nodosum_M_contig9301.1.1 ID=mRNA_A-nodosum_M_contig9301.1.1|Name=mRNA_A-nodosum_M_contig9301.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at A-nodosum_M_contig9301:12498..18455- (Ascophyllum nodosum dioecious)
ATGCGATGGGCTATGTGCACGGACGACATCACAACGCCAGCCTGCCTCAA
GAAAATCTTGATCGCCGGAAAACCCTGCCCATCAAGCGCAGCCGTGGGAT
GGAGCAGCCCCTCTTCAAGTGTTTTTCCAGAAGCTAGAGAAGGACACTGG
GGACATATATTTGCCGAAGGGAGCATCCGGCAGCCGTGGAGGTTCAGCCG
GGAGAGCCGATACTTGCGGACTTCAAGGCCGGATCGGTCGACTTCTGTTG
CGCAGCGAGAATCCACCGATGGTACTCCCGATCTACCACATAGGCATGCA
CCAGGTGGCGCCGGAAACCCCGGTCCTGAAGGGCGGCCGAGGAAACTCGT
CAAAAAGCTCCCCAACATCGGTCGCAAGATCCTCGTGTACGTCGGAGACC
CCATCGATGTCGGTCCAGTCGTGCGCAAGTGCCGGGAACGGATGGCGACG
CGTCACCTGCCATGGACGAAGCGACTTTCCAGGGCTGAGATAGAGTGCCA
TCAAGAGATAGCGGCGTTCGTCAGGGACCACGTACTCAAGCTGGAGGAGA
TTGCCAGGAGACTACTATGGCAGAGAACCGGAGATCTCTGCCCCTACGCC
GTCGCGGAATAG
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