mRNA_A-nodosum_M_contig9300.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9300.1.1
Unique NamemRNA_A-nodosum_M_contig9300.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig9300.1.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.800e-22
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 LKLCWALTMHKSQGQTLDKAAIDLGNREACTGLTFVCLSRANRIDDVLVTAMPLDRI 171
            L+LCWA+TMHKSQGQTL KA IDLG +EACTGLTFVCLSRA R+ D++V  M  DRI
Sbjct:   20 LRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRI 76
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BLAST of mRNA_A-nodosum_M_contig9300.1.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.690e-22
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 LKLCWALTMHKSQGQTLDKAAIDLGNREACTGLTFVCLSRANRIDDVLVTAMPLDRI 171
            L+LCWA+TMHKSQGQTL KA IDLG +EACTGLTFVCLSRA R+ D++V  M  DRI
Sbjct:   18 LRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRI 74
[Close]
BLAST of mRNA_A-nodosum_M_contig9300.1.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.370e-21
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 LKLCWALTMHKSQGQTLDKAAIDLGNREACTGLTFVCLSRANRIDDVLVTAMPLDRI 171
            L+LCWA+TMHKSQGQTL KA IDLG +EACTGLTFVCLSRA R+ D++V  M  DRI
Sbjct:   18 LRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRI 74
[Close]
BLAST of mRNA_A-nodosum_M_contig9300.1.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.400e-21
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 LKLCWALTMHKSQGQTLDKAAIDLGNREACTGLTFVCLSRANRIDDVLVTAMPLDRI 171
            L+LCWA+TMHKSQGQTL KA IDLG +EACTGLTFVCLSRA R+ D++V  M  DRI
Sbjct:   84 LRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRI 140
[Close]
BLAST of mRNA_A-nodosum_M_contig9300.1.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.510e-21
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 LKLCWALTMHKSQGQTLDKAAIDLGNREACTGLTFVCLSRANRIDDVLVTAMPLDRI 171
            L+LCWA+TMHKSQGQTL KA IDLG +EACTGLTFVCLSRA R+ D++V  M  DRI
Sbjct:   15 LRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPMSFDRI 71
[Close]
BLAST of mRNA_A-nodosum_M_contig9300.1.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.120e-20
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 LKLCWALTMHKSQGQTLDKAAIDLGNREACTGLTFVCLSRANRIDDVLVTAMPLDRI 171
            L+LCWA+TMHKSQGQTL KA IDLG +EACTGLTFVCLSRA R+ D++V  M  DRI
Sbjct:  191 LRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRI 247
[Close]
BLAST of mRNA_A-nodosum_M_contig9300.1.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.290e-20
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 LKLCWALTMHKSQGQTLDKAAIDLGNREACTGLTFVCLSRANRIDDVLVTAMPLDRI 171
            L+LCWA+TMHKSQGQTL KA IDLG +EACTGLTFVCLSRA R+ D++V  M  DRI
Sbjct:   18 LRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRI 74
[Close]
BLAST of mRNA_A-nodosum_M_contig9300.1.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 4.970e-20
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 LKLCWALTMHKSQGQTLDKAAIDLGNREACTGLTFVCLSRANRIDDVLVTAMPLDRI 171
            L+LCWA+TMHKSQGQTL KA IDLG +EACTGLTFVCLSRA R+ D++V  M  DRI
Sbjct:  365 LRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRI 421
[Close]
BLAST of mRNA_A-nodosum_M_contig9300.1.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 5.260e-20
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 LKLCWALTMHKSQGQTLDKAAIDLGNREACTGLTFVCLSRANRIDDVLVTAMPLDRI 171
            L+LCWA+TMHKSQGQTL KA IDLG +EACTGLTFVCLSRA R+ D++V  M  DRI
Sbjct:   82 LRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRI 138
[Close]
BLAST of mRNA_A-nodosum_M_contig9300.1.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 5.990e-20
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 LKLCWALTMHKSQGQTLDKAAIDLGNREACTGLTFVCLSRANRIDDVLVTAMPLDRI 171
            L+LCWA+TMHKSQGQTL KA IDLG +EACTGLTFVCLSRA R+ D++V  M  DRI
Sbjct:  361 LRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRI 417
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9300.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSF1_9PHAE2.800e-2273.68Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFN2_9PHAE6.690e-2273.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCP5_9PHAE1.370e-2173.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMH2_9PHAE1.400e-2173.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K214_9PHAE2.510e-2173.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUS2_9PHAE1.120e-2073.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN08_9PHAE1.290e-2073.68Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JFG8_9PHAE4.970e-2073.68Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4U7_9PHAE5.260e-2073.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8Y8_9PHAE5.990e-2073.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9300contigA-nodosum_M_contig9300:18653..18826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog400682.PAC_15699109
PFAMsHerpes_Helicase
Model size174
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.74e-07
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota,39K8F@33154|Opisthokonta,3C3GY@33208|Metazoa
DescriptionHelicase
Cds size150
COG categoryD
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870411.939047-UTR-A-nodosum_M_contig9300:18652..186761680870411.939047-UTR-A-nodosum_M_contig9300:18652..18676Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9300 18653..18676 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870411.955993-CDS-A-nodosum_M_contig9300:18676..188261680870411.955993-CDS-A-nodosum_M_contig9300:18676..18826Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9300 18677..18826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9300.1.1prot_A-nodosum_M_contig9300.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9300 18677..18826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9300.1.1

>prot_A-nodosum_M_contig9300.1.1 ID=prot_A-nodosum_M_contig9300.1.1|Name=mRNA_A-nodosum_M_contig9300.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=50bp
MHKSQGQTLDKAAIDLGNREACTGLTFVCLSRANRIDDVLVTAMPLDRID
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mRNA from alignment at A-nodosum_M_contig9300:18653..18826+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9300.1.1 ID=mRNA_A-nodosum_M_contig9300.1.1|Name=mRNA_A-nodosum_M_contig9300.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at A-nodosum_M_contig9300:18653..18826+ (Ascophyllum nodosum dioecious)
CTGAAGCTTTGTTGGGCTTTGACGATGCACAAATCGCAGGGGCAGACATT
GGACAAGGCAGCAATTGATTTGGGCAACAGAGAGGCGTGCACCGGCCTCA
CCTTCGTTTGTCTTAGCCGGGCCAATCGAATCGACGACGTGCTCGTCACG
GCCATGCCTCTCGATAGAATAGAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9300:18653..18826+

>mRNA_A-nodosum_M_contig9300.1.1 ID=mRNA_A-nodosum_M_contig9300.1.1|Name=mRNA_A-nodosum_M_contig9300.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=150bp|location=Sequence derived from alignment at A-nodosum_M_contig9300:18653..18826+ (Ascophyllum nodosum dioecious)
ATGCACAAATCGCAGGGGCAGACATTGGACAAGGCAGCAATTGATTTGGG
CAACAGAGAGGCGTGCACCGGCCTCACCTTCGTTTGTCTTAGCCGGGCCA
ATCGAATCGACGACGTGCTCGTCACGGCCATGCCTCTCGATAGAATAGAT
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