mRNA_A-nodosum_M_contig930.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig930.5.1
Unique NamemRNA_A-nodosum_M_contig930.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig930.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig930contigA-nodosum_M_contig930:92773..93231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size207
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870411.3708923-UTR-A-nodosum_M_contig930:92772..927881680870411.3708923-UTR-A-nodosum_M_contig930:92772..92788Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig930 92773..92788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870411.3807425-CDS-A-nodosum_M_contig930:92788..928521680870411.3807425-CDS-A-nodosum_M_contig930:92788..92852Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig930 92789..92852 +
1680870411.3944552-CDS-A-nodosum_M_contig930:93106..932311680870411.3944552-CDS-A-nodosum_M_contig930:93106..93231Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig930 93107..93231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig930.5.1prot_A-nodosum_M_contig930.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig930 92789..93231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig930.5.1

>prot_A-nodosum_M_contig930.5.1 ID=prot_A-nodosum_M_contig930.5.1|Name=mRNA_A-nodosum_M_contig930.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=63bp
MCTGDSDANCGGYYAMRIFTRDDSTEEPPSPVPSPVPSGNPMPVSSPTPV
MTIPDECTGIKAS
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mRNA from alignment at A-nodosum_M_contig930:92773..93231+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig930.5.1 ID=mRNA_A-nodosum_M_contig930.5.1|Name=mRNA_A-nodosum_M_contig930.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=459bp|location=Sequence derived from alignment at A-nodosum_M_contig930:92773..93231+ (Ascophyllum nodosum dioecious)
CGACGGCTGTAACATTATGTGTACCGGAGACTCCGACGCTAATTGCGGCG
GCTACTACGCTATGAGGATCTTTACTCGTGGTGAGTGCACACATCCCTTT
TATCATGTGGCGACCGTCTTCTTTCCTCCACTTTTAGGGAATAGGTTGGC
GTTTTACATTGCTCTTTGAAAGGTTTGAGTCAACCTTGCACCCCCGCTAC
AAGGCCGCTTGCTGACAGGGTTTGCCGCATTCAAACGAAACAATAATCTG
CGTTGATGGACTTGGTTTGAAATGCCAATTCCCTTACCGTACTGCTTATC
CCACCGGCGGTCTGTCTCTGAATACTTGCTACAGACGACAGCACCGAGGA
GCCCCCTTCTCCAGTGCCCAGCCCCGTGCCTAGTGGCAACCCAATGCCCG
TATCATCACCTACTCCGGTGATGACCATCCCTGATGAATGCACTGGAATC
AAGGCTAGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig930:92773..93231+

>mRNA_A-nodosum_M_contig930.5.1 ID=mRNA_A-nodosum_M_contig930.5.1|Name=mRNA_A-nodosum_M_contig930.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=189bp|location=Sequence derived from alignment at A-nodosum_M_contig930:92773..93231+ (Ascophyllum nodosum dioecious)
ATGTGTACCGGAGACTCCGACGCTAATTGCGGCGGCTACTACGCTATGAG
GATCTTTACTCGTGACGACAGCACCGAGGAGCCCCCTTCTCCAGTGCCCA
GCCCCGTGCCTAGTGGCAACCCAATGCCCGTATCATCACCTACTCCGGTG
ATGACCATCCCTGATGAATGCACTGGAATCAAGGCTAGC
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