mRNA_A-nodosum_M_contig93.22.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig93.22.1 vs. uniprot
Match: D7G5P0_ECTSI (SHSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5P0_ECTSI) HSP 1 Score: 100 bits (249), Expect = 3.720e-23 Identity = 61/145 (42.07%), Postives = 77/145 (53.10%), Query Frame = 1
Query: 64 RTPRHEVFETAESVTLNIDLPGCKKQDVDAQISEDDGAKTLRITAVRRRPHNKETVGVDGSDGGSRNEGS------------------------------------------EKFELSFLLGEGIDVSRVRGNMEDGVLTLVLPK 372
R+P +EV ET ++ TL +DLPGCKK+DVDAQ+SED G KTL ITAVR++P +DG +R+ S E F+LSF +GE IDVS +RG +EDGVLTLVLPK
Sbjct: 103 RSPPYEVLETPDAATLIVDLPGCKKEDVDAQVSEDSGTKTLTITAVRKKPRQ--------ADGDARSPSSPPDTSGSXXXXXXXXXXXXXXXXAPHEAAKDTPEPSLSSFSEESFKLSFRVGEDIDVSVIRGGLEDGVLTLVLPK 239
BLAST of mRNA_A-nodosum_M_contig93.22.1 vs. uniprot
Match: A0A1L9B4K1_9DELT (SHSP domain-containing protein n=3 Tax=Cystobacter TaxID=42 RepID=A0A1L9B4K1_9DELT) HSP 1 Score: 62.4 bits (150), Expect = 9.310e-10 Identity = 37/101 (36.63%), Postives = 57/101 (56.44%), Query Frame = 1
Query: 70 PRHEVFETAESVTLNIDLPGCKKQDVDAQISEDDGAKTLRITAVRRRPHNKETVGVDGSDGGSRNEGSEKFELSFLLGEGIDVSRVRGNMEDGVLTLVLPK 372
P +++ETAE +TL +DLPG + ++ ++ D TL + + R+RP + + G + RN G F SF+L +D SRV E+GVLTL LP+
Sbjct: 44 PAADIYETAEGITLQVDLPGHDARSIEVKVEND----TLTLKSERKRPESPKDEGTRRLE---RNFGV--FTRSFVLPRTVDPSRVEARYENGVLTLSLPR 135
BLAST of mRNA_A-nodosum_M_contig93.22.1 vs. uniprot
Match: A0A5C8EHS3_BRAPL (Hsp20/alpha crystallin family protein n=2 Tax=Brachyspira TaxID=29521 RepID=A0A5C8EHS3_BRAPL) HSP 1 Score: 60.1 bits (144), Expect = 6.000e-9 Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query: 76 HEVFETAESVTLNIDLPGCKKQDVDAQISEDDGAKTLRITAVRRRPHNKETVGVDGSDGGSRNEGSEKFELSFLLG-EGIDVSRVRGNMEDGVLTLVLPK 372
+++ E S T+ +D+PG KK+D+D I E+ L I A R++ V SD G + E K+E SF + +GID+ + N E+GVLTL LPK
Sbjct: 41 YKLEENDNSYTIEMDMPGVKKEDLDIGIKEN----MLSIYAERKK--------VMKSDDGDKEEIVSKYEQSFNISVKGIDIENISANFENGVLTLTLPK 128
BLAST of mRNA_A-nodosum_M_contig93.22.1 vs. uniprot
Match: A0A250IIS1_9DELT (Heat-shock protein n=2 Tax=Archangiaceae TaxID=39 RepID=A0A250IIS1_9DELT) HSP 1 Score: 59.7 bits (143), Expect = 1.060e-8 Identity = 40/124 (32.26%), Postives = 63/124 (50.81%), Query Frame = 1
Query: 22 VARELTESRFGTLTRTPRHEVFETAESVTLNIDLPGCKKQDVDAQISEDDGAKTLRITAVRRRPHNKETVGVDGSDGGSRNEGSEKFELSF-------LLGEGIDVSRVRGNMEDGVLTLVLPK 372
+ R+L+ + G P ++ ETAE +TL +DLPG + ++ ++ D TL + + R+R D S+ +NEG+ + E SF L +D SRV E+GVLTL LP+
Sbjct: 29 IFRDLSVRQTGAREFVPAADIHETAEGITLQVDLPGHDAKSIEVRVEND----TLTLKSERKR---------DPSES-QKNEGTRRLERSFGVYTRSFALPRTVDASRVEARYENGVLTLTLPR 138
BLAST of mRNA_A-nodosum_M_contig93.22.1 vs. uniprot
Match: A0A3D2CJP2_9FIRM (SHSP domain-containing protein n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A3D2CJP2_9FIRM) HSP 1 Score: 58.5 bits (140), Expect = 2.530e-8 Identity = 39/112 (34.82%), Postives = 61/112 (54.46%), Query Frame = 1
Query: 40 ESRFGTLTRTPRHEVFETAESVTLNIDLPGCKKQDVDAQISEDDGAKTLRITAVRRRPHNKETVGVDGSDGGSRNEGSE-KFELSFLLGEGIDVSRVRGNMEDGVLTLVLPK 372
E RF + R +V +T ++ + +LPG KK+D++ + ED L +TA R+ +E D DG R E S F SF + + ++ R+ G++EDG+LTL LPK
Sbjct: 29 EKRFFGGAASFRTDVKDTGDAYVIEAELPGFKKEDINVSVEED----VLTVTATRK----EEKSDKDKKDGYLRRERSYGSFSRSFDVSQ-VEADRITGSLEDGILTLQLPK 131
BLAST of mRNA_A-nodosum_M_contig93.22.1 vs. uniprot
Match: H9UGC8_SPIAZ (Molecular chaperone (Small heat shock protein) n=1 Tax=Spirochaeta africana (strain ATCC 700263 / DSM 8902 / Z-7692) TaxID=889378 RepID=H9UGC8_SPIAZ) HSP 1 Score: 57.8 bits (138), Expect = 5.070e-8 Identity = 35/101 (34.65%), Postives = 52/101 (51.49%), Query Frame = 1
Query: 70 PRHEVFETAESVTLNIDLPGCKKQDVDAQISEDDGAKTLRITAVRRRPHNKETVGVDGSDGGSRNEGSEKFELSFLLGEGIDVSRVRGNMEDGVLTLVLPK 372
PR +V E ++ + DLPG +++DVD ++ + L I R ++ GV + GS FE S L EGID +V ME+GVL+L +PK
Sbjct: 40 PRLDVVEREDAYDIYADLPGVRREDVDVSLT----SNVLTIKGTRHSETREKEAGVTREESGS-------FERSITLPEGIDGEKVAARMENGVLSLHIPK 129
BLAST of mRNA_A-nodosum_M_contig93.22.1 vs. uniprot
Match: A0A059ADM2_EUCGR (SHSP domain-containing protein n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059ADM2_EUCGR) HSP 1 Score: 57.0 bits (136), Expect = 1.460e-7 Identity = 36/96 (37.50%), Postives = 53/96 (55.21%), Query Frame = 1
Query: 88 ETAESVTLNIDLPGCKKQDVDAQISEDDGAKTLRITAVRRRPHNKETVGVDGSDGGSRNEGSE-KFELSFLLGEGIDVSRVRGNMEDGVLTLVLPK 372
ET E +DLPG KK++V ++ + + L+I+ RRR ++T D R E S +F F L E + + VR NME+GVLT+V+PK
Sbjct: 58 ETPEGHVFKVDLPGLKKEEVKVEVED---GRVLQISGERRREQEEKT------DKWHRVERSSGRFARRFRLPENVRLDEVRANMENGVLTVVVPK 144
BLAST of mRNA_A-nodosum_M_contig93.22.1 vs. uniprot
Match: A0A2T4V3Q7_VITXG (SHSP domain-containing protein n=1 Tax=Vitiosangium sp. (strain GDMCC 1.1324) TaxID=2138576 RepID=A0A2T4V3Q7_VITXG) HSP 1 Score: 56.6 bits (135), Expect = 1.480e-7 Identity = 36/102 (35.29%), Postives = 54/102 (52.94%), Query Frame = 1
Query: 70 PRHEVFETAESVTLNIDLPGCKKQDVDAQISEDDGAKTLRITAVRRRPHNKETVGVDGSDGGSRNEGS-EKFELSFLLGEGIDVSRVRGNMEDGVLTLVLPK 372
P +++ETAE +TL +DLPG + ++ ++ D TL + + R+ V DG R E S + SF+L +D SRV E+GVLTL LP+
Sbjct: 44 PPADIYETAEGITLQVDLPGHDPKAIEVKVEHD----TLTLKSERK-------VERSDKDGARRLERSFGVYTRSFVLPRTVDASRVEARYENGVLTLTLPR 134
BLAST of mRNA_A-nodosum_M_contig93.22.1 vs. uniprot
Match: A0A5C8EIQ5_9SPIR (Hsp20/alpha crystallin family protein n=5 Tax=Brachyspira aalborgi TaxID=29522 RepID=A0A5C8EIQ5_9SPIR) HSP 1 Score: 56.2 bits (134), Expect = 1.540e-7 Identity = 35/103 (33.98%), Postives = 58/103 (56.31%), Query Frame = 1
Query: 76 HEVFETAESVTLNIDLPGCKKQDVDAQISEDDGAKTLRITAVRRRP---HNKETVGVDGSDGGSRNEGSEKFELSF-LLGEGIDVSRVRGNMEDGVLTLVLPK 372
+++ E ++ T+ +D+PG KK+D++ I E+ L I A R++ NKE V V K+E SF + +GID+ ++ N+E+G+LTL LPK
Sbjct: 34 YKIEEDEKNYTIEMDMPGVKKEDLEIGIKEN----ILSIYAERKKEDKTENKEAVVVS------------KYEQSFNISAKGIDIDNIQANLENGILTLTLPK 120
BLAST of mRNA_A-nodosum_M_contig93.22.1 vs. uniprot
Match: UPI0011D1D924 (17.6 kDa class I heat shock protein-like n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D1D924) HSP 1 Score: 57.0 bits (136), Expect = 1.670e-7 Identity = 39/110 (35.45%), Postives = 58/110 (52.73%), Query Frame = 1
Query: 46 RFGTLTRTPRHEVFETAESVTLNIDLPGCKKQDVDAQISEDDGAKTLRITAVRRRPHNKETVGVDGSDGGSRNEGSE-KFELSFLLGEGIDVSRVRGNMEDGVLTLVLPK 372
R T R + ET ES +DLPG KK++V ++ + + L+I+ RRR ++ +D R E S +F F L E + + VR NME+GVLT+V+PK
Sbjct: 49 REATAMANARMDWKETPESHVFKVDLPGLKKEEVKVEVED---GRVLQISGERRREQEEK------ADKWHRVERSSGRFARRFRLPENVKLDGVRANMENGVLTVVVPK 149 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig93.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig93.22.1 >prot_A-nodosum_M_contig93.22.1 ID=prot_A-nodosum_M_contig93.22.1|Name=mRNA_A-nodosum_M_contig93.22.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=124bp LILRHNTVARELTESRFGTLTRTPRHEVFETAESVTLNIDLPGCKKQDVDback to top mRNA from alignment at A-nodosum_M_contig93:114612..115049+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig93.22.1 ID=mRNA_A-nodosum_M_contig93.22.1|Name=mRNA_A-nodosum_M_contig93.22.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=438bp|location=Sequence derived from alignment at A-nodosum_M_contig93:114612..115049+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig93:114612..115049+ >mRNA_A-nodosum_M_contig93.22.1 ID=mRNA_A-nodosum_M_contig93.22.1|Name=mRNA_A-nodosum_M_contig93.22.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at A-nodosum_M_contig93:114612..115049+ (Ascophyllum nodosum dioecious)back to top |