mRNA_A-nodosum_M_contig93.20.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig93.20.1
Unique NamemRNA_A-nodosum_M_contig93.20.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig93.20.1 vs. uniprot
Match: D7G5P1_ECTSI (Heat shock protein 40 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5P1_ECTSI)

HSP 1 Score: 589 bits (1518), Expect = 3.630e-205
Identity = 297/394 (75.38%), Postives = 337/394 (85.53%), Query Frame = 1
Query:    1 TRSRRLR--SGGENAR------TWLGRIRSSPTWSFRWGCFLAIAGLVVIVSGSNRDLYEVLGLGRGASASEIKKAYRQLSLKYHPDKNPSEDAATKFAEVASAYEILSDEEKRENYDKYGEDG-------PPADPFGDIFSQFGFGGGRRQRDEERRTPNVEIPLRVSLRQLYQGDTFDTLYVRQAMCMKASQCERNCKECAGPGIAIKMHQLGPGFMQQVQMRDDNCITRGKCWKKNCSACPDGPTVQEEVHLTAEVQRGMRDRDTIVFEEVADEAIGQKAGDLVFVIETLPHPDYTRRNDDLHMDMEIPLVDALSGFDIAFEHLDGHEVKAEKTGITSHGDVMQLKKEGMPRRGGGGKTFGNLYIRFSIIFPKSLTTEQVSTIRGVLLEAD 1137
            TRSRR R  SGG +A       +W+GR++        W CFLA+AGLVV+VSG  +DLYEVLGLGRGAS+SEIKKAYRQLSLKYHPDKNPSEDAAT+FAEVASAYE+LSDEEKR+ YD++GE+G         ADPFGD+FS FGFGGGRRQR EE RTPNVEIPLRVSLRQLY+GDTFDT+YVRQAMC+ A QCE+ CK+C GPGIA++MHQLGPGF+QQVQ+RDDNCI RGKCWKKNCSACP GPT QEEV LTAEVQ+GMRDRDTIVFEEVADE IG +AG LVF+IETL HPD+TRRNDDLHMDMEIPLV+ALSGF++ F+HLDGH VK +K GITS GDVMQLKKEGMPRRG  GKTFG+LYIRFSI FPK+L+ EQV+T+RGVLLE +
Sbjct:   12 TRSRRRRGGSGGTSATKSAVCGSWVGRLQ--------WSCFLALAGLVVLVSGQ-KDLYEVLGLGRGASSSEIKKAYRQLSLKYHPDKNPSEDAATRFAEVASAYEVLSDEEKRDTYDRFGEEGLKRTEQGGSADPFGDMFSHFGFGGGRRQR-EESRTPNVEIPLRVSLRQLYEGDTFDTVYVRQAMCVGAGQCEKKCKDCQGPGIAVRMHQLGPGFVQQVQIRDDNCIARGKCWKKNCSACPKGPTQQEEVILTAEVQKGMRDRDTIVFEEVADEMIGHRAGHLVFIIETLVHPDFTRRNDDLHMDMEIPLVEALSGFEVNFKHLDGHTVKVKKQGITSPGDVMQLKKEGMPRRGSNGKTFGSLYIRFSIAFPKALSAEQVTTLRGVLLEGE 395          
BLAST of mRNA_A-nodosum_M_contig93.20.1 vs. uniprot
Match: A0A835ZCK1_9STRA (Heat shock protein 40 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCK1_9STRA)

HSP 1 Score: 386 bits (992), Expect = 2.830e-126
Identity = 195/357 (54.62%), Postives = 246/357 (68.91%), Query Frame = 1
Query:   94 CFLAIAGLVVIVSGSNRDLYEVLGLGRGASASEIKKAYRQLSLKYHPDKNPSEDAATKFAEVASAYEILSDEEKRENYDKYGEDG------------PPADPFGDIFSQFGFGGGRRQRDEERRTPNVEIPLRVSLRQLYQGDTFDTLYVRQAMCMKASQCERNCKECAGPGIAIKMHQLGPGFMQQVQMRDDNCITRGKCWKKNCSACPDGPTVQEEVHLTAEVQRGMRDRDTIVFEEVADEAIGQKAGDLVFVIETLPHPDYTRRNDDLHMDMEIPLVDALSGFDIAFEHLDGHEVKAEKTGITSHGDVMQLKKEGMPRRGGGGK-TFGNLYIRFSIIFPKSLTTEQVSTIRGVL 1125
            C L + G + + +   RD Y +LGL + AS SEIKKAYRQLSLKYHPDKN SEDAAT FAEVASAYE+LSD +KR  YD YGE+G                         GF G +R RDE  RT NVE+PLRVSLRQLY GD F+  +VRQ MC++A++CE+ C EC GPG+A++  ++ PGF+QQ+QMRDD C+ RGKCW K C+ACP+GPT  E V LT EVQ+GM+D + IVFEE ADEA G K GDLV  I+TLPH ++ R  DDL M+M+I L+DAL GF+  F HLDG  V  ++TG+T+ G    L  EGMPRR   G+ + G+L IRF+++FPK L+ +Q  +IR VL
Sbjct:    6 CLLLLLGALAVAAA--RDFYAILGLKKTASDSEIKKAYRQLSLKYHPDKNKSEDAATHFAEVASAYEVLSDPDKRSTYDNYGEEGLKQQEXXXXXXXXXXXXXXXXXXXXGFPG-QRARDEVPRTANVEVPLRVSLRQLYSGDAFEASFVRQVMCLRAAECEKRCPECMGPGVAMRTQKIAPGFVQQIQMRDDRCVARGKCWNKRCTACPNGPTEPESVPLTVEVQKGMQDGEHIVFEESADEAAGHKPGDLVLTIDTLPHAEFARHGDDLFMEMDIDLLDALVGFETGFAHLDGRRVPVKQTGVTAPGTTRVLSGEGMPRRNPRGQGSHGDLTIRFNVVFPKHLSPDQQRSIREVL 359          
BLAST of mRNA_A-nodosum_M_contig93.20.1 vs. uniprot
Match: A0A835Z111_9STRA (J domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z111_9STRA)

HSP 1 Score: 390 bits (1001), Expect = 4.790e-126
Identity = 196/361 (54.29%), Postives = 255/361 (70.64%), Query Frame = 1
Query:  100 LAIAGLVVIVSGSNRDLYEVLGLGRGASASEIKKAYRQLSLKYHPDKNPSEDAATKFAEVASAYEILSDEEKRENYDKYGEDG----------PPADPFGDIFSQFGFGGGRRQRDEERRTPNVEIPLRVSLRQLYQGDTFDTLYVRQAMCMKASQCERNCKECAGPGIAIKMHQLGPGFMQQVQMRDDNCITRGKCWKKNCSACPDGPTVQEEVHLTAEVQRGMRDRDTIVFEEVADEAIGQKAGDLVFVIETLPHPDYTRRNDDLHMDMEIPLVDALSGFDIAFEHLDGHEVKAEKTG---ITSHGDVMQLKKEGMP----RRGGGGKTFGNLYIRFSIIFPKSLTTEQVSTIRGVLLE 1131
            LA+  L+V+VSG  +D Y+VLG+ RGAS ++IKKAYR+LSLKYHPDKNPSEDAAT FAEVA+AYE+LSD +KR  YD YGE+G             DPF D F  FGF G RR RDE +RT +V +PLRVSLRQLY GD F+  +VRQ MC++A +CE  C EC GPG+A++  +LGPGF+QQ+Q+RDD C+ RG+CW + C+ACP G T  E   LT ++ +G RD + IVFEE+ADEA G K GDLV  + TLPHPD+TRR DDL +D+++PLVDAL GF+    HLDGH V+  +     +T+ GDV+ L  EGMP         G+  G L+I+F+++FP++L+  Q + IR VL E
Sbjct:   16 LALCTLLVLVSGG-KDYYDVLGVARGASEADIKKAYRKLSLKYHPDKNPSEDAATHFAEVATAYEVLSDADKRSTYDNYGEEGLKRRXXXXXXXXXDPF-DSFFNFGFPGQRR-RDEVQRTKDVHLPLRVSLRQLYTGDVFEVHFVRQVMCLRAGECETKCPECHGPGLAVRTQRLGPGFVQQMQVRDDRCVARGRCWNRRCAACPRGATEPEGADLTVDLHKGARDGEKIVFEEMADEAAGHKPGDLVLTVSTLPHPDFTRRGDDLFLDLDVPLVDALVGFETTVVHLDGHAVRVSRGAGGAVTAPGDVLVLAGEGMPLTARAAAAAGRERGALHIKFNVVFPRALSAAQQAQIRAVLGE 373          
BLAST of mRNA_A-nodosum_M_contig93.20.1 vs. uniprot
Match: A0A7S2UXH4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXH4_9STRA)

HSP 1 Score: 367 bits (943), Expect = 9.620e-119
Identity = 185/368 (50.27%), Postives = 246/368 (66.85%), Query Frame = 1
Query:   85 RWGCFLAIAGLVVIV-------SGSNRDLYEVLGLGRGASASEIKKAYRQLSLKYHPDKNPSEDAATKFAEVASAYEILSDEEKRENYDKYGEDGPP-----------ADPFGDIFSQFGFGG--GRRQR-DEERRTPNVEIPLRVSLRQLYQGDTFDTLYVRQAMCMKASQCERNCKECAGPGIAIKMHQLGPGFMQQVQMRDDNCITRGKCWKKNCSACPDGPTVQEEVHLTAEVQRGMRDRDTIVFEEVADEAIGQKAGDLVFVIETLPHPDYTRRNDDLHMDMEIPLVDALSGFDIAFEHLDGHEVKAEKTGITSHGDVMQLKKEGMPRRGGGGKTFGNLYIRFSIIFPKSLTTEQVSTIRGVL 1125
            R   FL  A L+V++       +  +RD Y++LG+ R AS  EIKKAYR+LSL+YHPDKNPSEDA++KFA+VA+AYE LSDEEKR+ YD+YGE+G              DPF  +F  FGFGG  GRR R D ERRTP++ +PLRVSLRQLY GD FD  Y+R+ +C    +CE+NC +C GPG+ +K  QL PGF+QQVQ  D NC+ RGKCW++ C ACP+G T  E++ LT ++  G+ + D I FE VA E IG   GDLV ++  + H  + RR DDLH  + IPL DAL GF     HLDGH+V   K  +T  G V++++ EGMP++GG G  FG++Y+  SI FP  L+ EQ +++R +L
Sbjct:   13 RMSSFLIFAILLVMMPFTLWKAAAQDRDFYKILGVSRKASDKEIKKAYRKLSLQYHPDKNPSEDASSKFADVAAAYECLSDEEKRKTYDRYGEEGLQKMEARQNAGGGGDPFSSMFEAFGFGGFGGRRGRGDGERRTPDLTLPLRVSLRQLYLGDIFDMTYIREVLCTNHGECEKNCPDCHGPGVRVKTQQLAPGFVQQVQASDPNCVARGKCWRRGCKACPNGQTETEQISLTVDLAPGLAEGDNIRFEGVASEQIGHIPGDLVLLVAPIRHEYFERRGDDLHTTINIPLKDALVGFSTEINHLDGHKVLLRKEDVTYFGQVVKIRGEGMPKKGGTGG-FGDMYVECSITFPAQLSEEQKASLREIL 379          
BLAST of mRNA_A-nodosum_M_contig93.20.1 vs. uniprot
Match: A0A4D9DAZ8_9STRA (J domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAZ8_9STRA)

HSP 1 Score: 344 bits (882), Expect = 6.580e-110
Identity = 172/357 (48.18%), Postives = 238/357 (66.67%), Query Frame = 1
Query:  100 LAIAGLVVIVSGSN-RDLYEVLGLGRGASASEIKKAYRQLSLKYHPDKNPSEDAATKFAEVASAYEILSDEEKRENYDKYGEDG----------PPADPFGD-IFSQFGFGG---GRRQRDEERRTPNVEIPLRVSLRQLYQGDTFDTLYVRQAMCMKASQCERNCKECAGPGIAIKMHQLGPGFMQQVQMRDDNCITRGKCWKKNCSACPDGPTVQEEVHLTAEVQRGMRDRDTIVFEEVADEAIGQKAGDLVFVIETLPHPDYTRRNDDLHMDMEIPLVDALSGFDIAFEHLDGHEVKAEKTGITSHGDVMQLKKEGMPRRGGGGKTFGNLYIRFSIIFPKSLTTEQVSTIRGVL 1125
            +++  L+ I+ G    D Y+ LG+ R AS SEIKKA+R+LSL  HPDKN S DA  KFA  ++AY +LS+EE+RE YD+ GE+G             DPFG  IF  FGFGG   G R+RDEE +TPNV IPLRVSL+QL+ GD  +  Y+RQ +CM   +C +   EC GPG+ ++   L PGF+QQVQ+RD+ C+ RGK W+K CSACP+G T  EEV LT ++Q GM+D + I F +VADE +G  AGDLV  ++ +PH  YTR  DDL + +++ L+DAL GF+   + +DG +VK  K  +TSHG+V ++K +GMP+ GG G   G+L I + + FP++LT EQ + ++  L
Sbjct:    3 ISLCLLIFILRGHGAEDYYKTLGIKRSASQSEIKKAWRKLSLDLHPDKNNSPDAQEKFATASNAYTVLSNEERREVYDREGEEGLKRMEAREAQGSMDPFGGGIFEAFGFGGFGGGGRRRDEEAKTPNVVIPLRVSLKQLFTGDLLEVTYIRQVLCMNHKECTKPAPECQGPGVRLRQQHLAPGFIQQVQVRDETCVARGKAWRKGCSACPNGQTQPEEVKLTVDIQPGMKDGEMITFSDVADEKVGHSAGDLVVHVQAIPHEFYTRHGDDLRVSLKVGLLDALVGFETTVKQVDGRDVKLNKPTVTSHGEVQRVKGQGMPKSGGSG--LGDLLITWEVTFPEALTDEQKALLKKAL 357          
BLAST of mRNA_A-nodosum_M_contig93.20.1 vs. uniprot
Match: B7FRV0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FRV0_PHATC)

HSP 1 Score: 338 bits (867), Expect = 2.790e-107
Identity = 174/358 (48.60%), Postives = 230/358 (64.25%), Query Frame = 1
Query:  115 LVVIVSGSNRDLYEVLGLGRGASASEIKKAYRQLSLKYHPDKNPSEDAATKFAEVASAYEILSDEEKRENYDKYGEDG----------PPADPFGDIFSQFGF--GGGRRQRDEERRTPNVEIPLRVSLRQLYQGDTFDTLYVRQAMCMKASQCERNCKECAGPGIAIKMHQLGPGFMQQVQMRDDNCITRGKCWKKNCSACPDGPTVQEEVHLTAEVQRGMRDRDTIVFEEVADEAIGQKAGDLVFVIETLPHPDYTRRNDDLHMDMEIPLVDALSGFDIAFEHLDGHEVKAEKTGITSHGDVMQLKKEGMPRRGGGGKTFGNLYIRFSIIFPKSLTTEQVSTIRGVLLEADQTTDE 1152
            LV +V  ++RD Y++LG+ R A+  EIKKAYRQ SL++HPDKN  E A+ KFAEVA AYE+LSD+E +  YD++GEDG               F D+FSQFGF  GGGR+QRD+E+RTP+VEIPL VSL+QLY G+T D  YVRQ +C++   C ++  +C GPG+ ++  QL PGF+QQVQ RDD C+ RGK W   C  CP   T  E + +T E+Q G R  + + FE V DE  G K GDL FV+   PH  Y R  DDL+  ME+PLVDAL+GF +  +HLD HE       +T    V+++  +GMPRR G G  FG+LY+ F + FP +LT EQ   IR +L   ++   E
Sbjct:   30 LVPVVQAASRDYYQILGVSRDATIKEIKKAYRQKSLEFHPDKNKDEGASEKFAEVARAYEVLSDDELKAVYDRHGEDGLKQREQRGXXXXXXXFEDLFSQFGFDFGGGRQQRDQEQRTPDVEIPLYVSLKQLYLGETIDVDYVRQVLCLQWEMCVKSAPDCQGPGVRVRRQQLAPGFVQQVQQRDDRCVARGKQWLDKCRECPR-QTETERIQVTIEIQPGFRAGERVSFEGVTDEKPGFKPGDLHFVLMEEPHDVYHRDRDDLYKTMEVPLVDALTGFSVTLKHLDDHEYTVTVEDVTDCDHVLRVPGKGMPRRSGRG--FGDLYLTFEVDFPDTLTREQKDAIRSILAPGEEAKQE 384          
BLAST of mRNA_A-nodosum_M_contig93.20.1 vs. uniprot
Match: A0A0G4GG88_VITBC (J domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GG88_VITBC)

HSP 1 Score: 335 bits (858), Expect = 3.670e-106
Identity = 172/347 (49.57%), Postives = 230/347 (66.28%), Query Frame = 1
Query:  115 LVVIVSGS----NRDLYEVLGLGRGASASEIKKAYRQLSLKYHPDKNPSEDAATKFAEVASAYEILSDEEKRENYDKYGEDG-------PPADPFGDIFSQFGFGGGRRQRD--EERRTPNVEIPLRVSLRQLYQGDTFDTLYVRQAMCMKASQCERNCKECAGPGIAIKMHQLGPGFMQQVQMRDDNCITRGKCWKKNCSACPDGPTVQEEVHLTAEVQRGMRDRDTIVFEEVADEAIGQKAGDLVFVIETLPHPDYTRRNDDLHMDMEIPLVDALSGFDIAFEHLDGHEVKAEKTGITSHGDVMQLKKEGMPRRGGGGKTFGNLYIRFSIIFPKSLTTEQVSTIR 1116
            L+V++S +     RD Y++LG+ + +SASEIKKAYR+LS+KYHPDKNP ++A+ KFAE+A AYEILSD+EKR  YD +GE+G          DPF DIFS FGFGGGRR     E+ +TPN+++ LRV+L QLY G+ F   Y RQ +C+   +C  + ++C G G+ +   Q+GPGF+ Q QM+DD+C+  GK WKK C ACP G T +E V LTA V+ GM   DTI FE VAD  +G + GDL FV+    H  + RR +DL   +EIPL+DAL GF+  F HLDG +   +K  +T HG+ M +K +GMP RGG   +FG+L I F I FP  LT +Q   +R
Sbjct:   20 LIVLLSATLSQCGRDFYKILGVKKESSASEIKKAYRKLSMKYHPDKNPEKEASKKFAEIAEAYEILSDDEKRSIYDNHGEEGLKQQHQESHMDPF-DIFSAFGFGGGRRXXXXXEKEKTPNLDMKLRVTLEQLYFGELFHVTYRRQVLCVNVDECTVDRRDCQGAGLRVVTQQMGPGFIVQNQMQDDSCVGPGKAWKKKCKACPKGQTEEEPVLLTAYVEAGMTSGDTITFEGVADHKVGYEPGDLNFVVTETQHDRFVRRGNDLLTTVEIPLLDALVGFETQFRHLDGKDFPLKKDDVTDHGETMTVKGKGMPVRGGKEGSFGDLLITFHIKFPDKLTKKQKELVR 365          
BLAST of mRNA_A-nodosum_M_contig93.20.1 vs. uniprot
Match: B8BTB9_THAPS (J domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTB9_THAPS)

HSP 1 Score: 329 bits (844), Expect = 5.330e-104
Identity = 168/350 (48.00%), Postives = 228/350 (65.14%), Query Frame = 1
Query:  115 LVVIVSGSNRDLYEVLGLGRGASASEIKKAYRQLSLKYHPDKNPSEDAATKFAEVASAYEILSDEEKRENYDKYGEDGPPADP-----------FGDIFSQFGF--GGGRRQRDEERRTPNVEIPLRVSLRQLYQGDTFDTLYVRQAMCMKASQCERNCKECAGPGIAIKMHQLGPGFMQQVQMRDDNCITRGKCWKKNCSACPDGPTVQEEVHLTAEVQRGMRDRDTIVFEEVADEAIGQKAGDLVFVIETLPHPDYTRRNDDLHMDMEIPLVDALSGFDIAFEHLDGHEVKAEKTGITSHGDVMQLKKEGMPRRGGGGKTFGNLYIRFSIIFPKSLTTEQVSTIRGVL 1125
            L+V  + + +D Y++LG+ R A+  EIKKAYR  SL++HPDKN  E AA KFAE+A AYE+L+DEEK+  YD++GE+G                F DIFS FGF  GGG+ +R  E+ TPNV++PLRV+L+QLY GDT +  YVR  +C+   +C +  +EC GPG+ ++M Q+ PGF+QQVQ RDD C+ RGK W+ NC  CP+G T  E + L  ++Q+GM   + + FE V+DE  G   GDL FVI  + H  + R  D L++ MEIPLVDAL+GF   F HLDGH+      G+T    VM++  +GMPRRGG G  FG+LYI F + FP +LT +Q   IR +L
Sbjct:   18 LLVHPTHAAQDFYKLLGITRKATQKEIKKAYRSKSLEFHPDKNKEEGAAEKFAEIAYAYEVLTDEEKKGIYDRHGEEGLKQHEQRGGXXXXHGGFDDIFSHFGFNFGGGQGRRQREQTTPNVDVPLRVTLKQLYLGDTIEVEYVRNTLCVNWQECMKANQECQGPGVKVRMQQIAPGFVQQVQQRDDRCVARGKMWRNNCRECPNGQTQPETIELEIDLQKGMYPGEAVTFEGVSDEKPGMNPGDLNFVIVQVGHEFFHRDGDHLYVTMEIPLVDALTGFSHEFTHLDGHKFTVNVDGVTECDHVMRVSGKGMPRRGGRGG-FGDLYITFDVDFPDTLTEKQRKEIRKIL 366          
BLAST of mRNA_A-nodosum_M_contig93.20.1 vs. uniprot
Match: K0T887_THAOC (J domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T887_THAOC)

HSP 1 Score: 327 bits (838), Expect = 4.470e-103
Identity = 170/361 (47.09%), Postives = 228/361 (63.16%), Query Frame = 1
Query:  106 IAGLVVIVSGSNRDLYEVLGLGRGASASEIKKAYRQLSLKYHPDKNPSEDAATKFAEVASAYEILSDEEKRENYDKYGEDGPPADP-----------FGDIFSQFGFGGG----RRQRDEERRTPNVEIPLRVSLRQLYQGDTFDTLYVRQAMCMKASQCERNCKECAGPGIAIKMHQLGPGFMQQVQMRDDNCITRGKCWKKNCSACPDGPTVQEEVHLTAEVQRGMRDRDTIVFEEVADEAIGQKAGDLVFVIETLPHPDYTRRNDDLHMDMEIPLVDALSGFDIAFEHLDGHEVKAEKTGITSHGDVMQLKKEGMPRRGGGGKTFGNLYIRFSIIFPKSLTTEQVSTIRGVLLEADQT 1143
            +A L   V+    + Y++LG+ + AS  EIKKAYRQ SL+YHPDKN  E AA KFAE+  AYE+L+DEEK+  YD++GE+G                F DIFS FGFGGG    RRQR++   TPNV++PLRV+L+QLY GD  +  YVRQ +C    +C +N +EC GPG+ ++M Q+ PGF+QQVQ RD+ C+  GK W+ NC  CP+G T +E++ LT ++ +GM   + + FE VADE  G  AGDL F I    H  + R  D L++ MEIPLVDAL+GF   F HLDGH+       +T    VM++  +GMPRR G G  FG+LYI F + FP +L+ EQ   IR +  + D T
Sbjct:   17 VALLAFSVAHGAENFYKLLGISKNASPKEIKKAYRQKSLQYHPDKNKEEGAAEKFAEINYAYEVLTDEEKKNVYDRHGEEGLKQHEQRQGQGGGHGGFDDIFSHFGFGGGFGGQRRQREQS--TPNVDVPLRVTLKQLYLGDEIEVSYVRQTLCTNWQECMKNNQECQGPGVKVRMQQIAPGFVQQVQQRDERCVAHGKMWRSNCRDCPNGKTQKEKIDLTIDLNKGMYPGEAVTFEGVADEKPGMTAGDLNFFIVEEKHDHFHRDGDHLYVTMEIPLVDALTGFSHEFTHLDGHKFTVPVNDVTECDHVMRVAGKGMPRRNGRG--FGDLYITFDVDFPDTLSEEQKRGIRKIFGKKDPT 373          
BLAST of mRNA_A-nodosum_M_contig93.20.1 vs. uniprot
Match: A0A7S0GKJ3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GKJ3_9STRA)

HSP 1 Score: 324 bits (830), Expect = 4.290e-102
Identity = 172/349 (49.28%), Postives = 226/349 (64.76%), Query Frame = 1
Query:  118 VVIVSGSNRDLYEVLGLGRGASASEIKKAYRQLSLKYHPDKNPSEDAATKFAEVASAYEILSDEEKRENYDKYGEDG-----------PPADPFGDIFSQFGFGGGRRQRDEERRTPNVEIPLRVSLRQLYQGDTFDTLYVRQAMCMKASQCERNCKECAGPGIAIKMHQLGPGFMQQVQMRDDNCITRGKCWKKNCSACPDGPTVQEEVHLTAEVQRGMRDRDTIVFEEVADEAIGQKAGDLVFVIETLP-HPD-YTRRNDDLHMDMEIPLVDALSGFDIAFEHLDGHEVKAEKTGITSHGDVMQLKKEGMPRRGGGGKTFGNLYIRFSIIFPKSLTTEQVSTIRGVL 1125
            V ++  +  D Y+ LG+ R A+  EIKKAYR  SL++HPDKN +E AA KF E++ AYE+LSDEEKR+ YD+ GE+G                F DIFS FGFGG +RQ D  +RTP+VEIPLR++L+Q+Y+G   +  YVRQ +CM    C +  KEC GPG+ +KM Q+ PGF+QQVQ RD+NC+ RGK WK NC  CP G T  E++ L+ EV  GMR  + + FE VADE  G +AGDL FVI  +  +P  +TR  D L+  MEIPLVDAL GF    EHLDGH+   +   +T    VM++  +GMPRR G G  FG+LY+ F I FP+ L+ EQ + I  +L
Sbjct:    7 VALLILARADFYDDLGISRKATLKEIKKAYRSKSLEFHPDKNKAEGAADKFGEISRAYEVLSDEEKRQIYDERGEEGLKRHEDGXXXXXXXXXFDDIFSHFGFGGRQRQDDGVQRTPSVEIPLRLTLQQMYEGVELEVDYVRQTLCMNWEMCMKTSKECQGPGVKVKMQQIAPGFVQQVQQRDNNCVARGKMWKPNCRDCPKGKTQPEKISLSVEVTPGMRAGERVSFESVADEKPGMEAGDLHFVILQVDVNPVLFTRDGDRLYKTMEIPLVDALVGFKRTLEHLDGHKFTIQVDKVTECDHVMRVPGKGMPRRSGRG--FGDLYLTFEIDFPEELSAEQKAGINKIL 353          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig93.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5P1_ECTSI3.630e-20575.38Heat shock protein 40 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A835ZCK1_9STRA2.830e-12654.62Heat shock protein 40 n=1 Tax=Tribonema minus TaxI... [more]
A0A835Z111_9STRA4.790e-12654.29J domain-containing protein n=1 Tax=Tribonema minu... [more]
A0A7S2UXH4_9STRA9.620e-11950.27Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9DAZ8_9STRA6.580e-11048.18J domain-containing protein n=2 Tax=Monodopsidacea... [more]
B7FRV0_PHATC2.790e-10748.60Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A0G4GG88_VITBC3.670e-10649.57J domain-containing protein n=2 Tax=Vitrella brass... [more]
B8BTB9_THAPS5.330e-10448.00J domain-containing protein n=1 Tax=Thalassiosira ... [more]
K0T887_THAOC4.470e-10347.09J domain-containing protein n=1 Tax=Thalassiosira ... [more]
A0A7S0GKJ3_9STRA4.290e-10249.28Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig93contigA-nodosum_M_contig93:97205..108253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps268157
PFAMsDnaJ,DnaJ_C
Model size1925
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons7
Evalue2.68e-58
EggNOG OGsCOG0484@1|root,KOG0712@2759|Eukaryota,2XB20@2836|Bacillariophyta
Ec32 ortholog descriptionHeat shock protein 40
Ec32 orthologEc-12_008580.1
DescriptionDnaJ C terminal domain
Cds size651
COG categoryO
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig93.20.1prot_A-nodosum_M_contig93.20.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig93 97963..100777 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870403.9847438-UTR-A-nodosum_M_contig93:97204..979621680870403.9847438-UTR-A-nodosum_M_contig93:97204..97962Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig93 97205..97962 -
1680870404.1329849-UTR-A-nodosum_M_contig93:100777..1008491680870404.1329849-UTR-A-nodosum_M_contig93:100777..100849Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig93 100778..100849 -
1680870404.1449287-UTR-A-nodosum_M_contig93:101689..1018161680870404.1449287-UTR-A-nodosum_M_contig93:101689..101816Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig93 101690..101816 -
1680870404.1562707-UTR-A-nodosum_M_contig93:107936..1082531680870404.1562707-UTR-A-nodosum_M_contig93:107936..108253Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig93 107937..108253 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870403.9989214-CDS-A-nodosum_M_contig93:97962..980461680870403.9989214-CDS-A-nodosum_M_contig93:97962..98046Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig93 97963..98046 -
1680870404.007776-CDS-A-nodosum_M_contig93:98592..987691680870404.007776-CDS-A-nodosum_M_contig93:98592..98769Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig93 98593..98769 -
1680870404.020069-CDS-A-nodosum_M_contig93:99348..994801680870404.020069-CDS-A-nodosum_M_contig93:99348..99480Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig93 99349..99480 -
1680870404.0304685-CDS-A-nodosum_M_contig93:100092..1002421680870404.0304685-CDS-A-nodosum_M_contig93:100092..100242Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig93 100093..100242 -
1680870404.041188-CDS-A-nodosum_M_contig93:100669..1007771680870404.041188-CDS-A-nodosum_M_contig93:100669..100777Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig93 100670..100777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig93.20.1

>prot_A-nodosum_M_contig93.20.1 ID=prot_A-nodosum_M_contig93.20.1|Name=mRNA_A-nodosum_M_contig93.20.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=217bp
MCMKASQCERNCKECAGPGIAIKMHQLGPGFMQQVQMRDDNCITRGKCWK
KNCSACPDGPTVQEEVHLTAEVQRGMRDRDTIVFEEVADEAIGQKAGDLV
FVIETLPHPDYTRRNDDLHMDMEIPLVDALSGFDIAFEHLDGHEVKAEKT
GITSHGDVMQLKKEGMPRRGGGGKTFGNLYIRFSIIFPKSLTTEQVSTIR
GVLLEADQTTDERVEL*
back to top

mRNA from alignment at A-nodosum_M_contig93:97205..108253-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig93.20.1 ID=mRNA_A-nodosum_M_contig93.20.1|Name=mRNA_A-nodosum_M_contig93.20.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=11049bp|location=Sequence derived from alignment at A-nodosum_M_contig93:97205..108253- (Ascophyllum nodosum dioecious)
ACTCGATCTAGAAGACTCCGGTCCGGCGGAGAGAACGCACGAACCTGGTT AGGCCGCATTCGATCGAGTCCAACATGGAGCTTTCGATGGGGCTGTTTCC TGGCTATCGCCGGCCTAGTTGTGATTGTATCCGGATCTAACAGGGATCTG TACGAGGTACTAGGATTAGGGCGCGGGGCAAGCGCATCAGAGATCAAGAA GGCTTATCGACAGCTGTCTCTCAAGTACCACCCGGACAAAAATCCAAGCG AGGATGCCGCGACCAAGTTTGCGGAGGTGGCCTCCGCGTACGAGATTCTG TCCGACGAAGAAAAACGGTAAGTTGTCTATTTACTATTTACTGCAGTAGA GAGGAGGGACAACGTCTCTTTTACCGCCCGATGGGCTGTACCGTACATAA AGCAAATGTTGCTTCAAATGGCAACCGGGGTAAGGCCAGCGAGGACAAAG TTTCTACAGTAGACGCTCATTGGGAAGAGACCTAATGTCCTAAGATGAGT GACTTTTAATGTACAGACAAGAAAGCTCTTCGAGATACTGTGTCTAATCT TGGACAAGGTAGATGTACACTCGGGGATACGAGACCTAATTATAAGTACG ATATTAGCTCTAATATAACCGGAAAAGACACAAGTCAGTTGTCTTGAAAT AGGTGGACGTGGGCTTTCGTCCTCCTGGCTAATGTAAATAATCATGTTTT ATTATTTAGAAAAGACAGACGTAGCGGAATAACTCGGCCTCAAGTGAGAG TACACTCCTACCAGGTAGTTAATTAGCAGAGGCGCCCTTCGCCGCCTTGA TAAAGCTCTAGTTCTAGCGGAAAATACGATTGCTTCGGATGTGTCATCCT TCCGCACGATATAATTTACGGATAATTTATCAATATCCTGGTAACTCACT CCGGACAGAGTATCAGGTTAGCAGGTGGACAAGAGGTCTTGGTTGGTGAC CCATAGGACTCTTGTGTAACCCACACAAAATATAGACTACTGTGTGTGTA TTTGTTCTTCACATAGCTGGTACTGTACAGTATACGCGGTTGCCAATCCT GTACGTGGTCTGCTGGACGGGAAATGATCAGAGGAACATCTACGAACCTC CAACGAGAGCATTACACAAAGGTTTTGTCTTTGCAGCCTATGATCCCACC TAAACGTTTTGACATTTTCCCCGCTGACTGGGGGATGCTCAGAAGGTCTA CTGTAGATGCGTTCATATTTTCATTCAAAGTCAAAAAGAGAGGTGGACAA AAAAGACGGACATTTGGTTGTCGATTTGGCACGATCTAGGTGTTTGTCTC TGCAACGTAGTCTAGAGGCAGTACAGTAGTAGTTCTTCGTCTACTTGCAG ATGAATACCGGTGTCTCATAGAACCCGGGAGGAATCCCGTAAGTAAGCAC CAGATTCAGCCTGAGTATGGAGATGAGCAGACTGACGCGGGACGGGACGG CTATTGGCAACCTTATCCGGTTGATCCATACTCTGCTATATGTGATGACC ATACATACATACATACATACATACTTGCTGGATTATGTCGAAGATATCTA CGATGGTGGTCCTCTCTGCCCAAACCCTGTGTATTTACCACCACTAGGTT GTTTTTGTTTATTTTTCTTGGTGTCTCTGCATGGCGATGGACAGTATAAC GGTGGACTTCTCCCCGACATGATACTGCTGACCCTATGTTACTACCATCG GGGAACCCGTTAAAATGCCATGAAGAGGTTTTGTCTTTGCAGCCTATGAT CCCACAGAAACGTTTTGACATTTTCCCCTCTGTGTGGGATGCCCAGAAGG TCTCAATGCGTTCAGATTTTTCTTTAATAAAGTACTGTTTGTAGTACTGT ACTCTACTACAGTACCTGTTAGAGTATGTATGGTCGTCACAAATGGCAAG AGTGTTGTTGTTGTTGTTGTTTTCTTCACATTAACCGATCGGGCCTCAAC CATACCCAATAATACACGTGGTTGCCAATCCGGTACGTGGTCTGCTGGAC AGAAAAAGATCAGAGGAACATCTACCAAGCTCCAATGAGAGCAAAGAAAA ACACAAACACACAAACGACAAAGAGAAAGGAACAGGAATAACAAAATACA CAGGTCAGAGAAAGATAAACGAGCGGCATTCGATAGAGAGAGTTTGGCAT AGTGCCGGCCGCGAGCCATCCGATACCCTCCCCGGCTCGCAACCATGCAC CCAAAAAAAAAAAAAAAACGCGTAGCATCTACCACATTCCGTACTTAAGG GTTTCAGTTTCACTAACGGCACAATCGACGTCGCTTAGGGAGTCCTTGGG TTGGCCCAATCAACGCGGTTCGAAAACGTCTTAAGCTTGCTACAGTCACA CCAGGTGCAACCTCAACCTTGTCCGCCTCTTCCGCGTCTCTCTTCTTCTG CCGTTGATCGGACGCATCCTCTTCTTCCCTCACCCACGCGGCCATAAACC TACAACCCCCTTCTTGTACGGTGTTGTATCATGCCCCAGGGTCGAGTGCG GCGGTTTTCCAGTCCCCCGTGACGCCAAATAGCCGAAGATCATCTGCCAC GCAGTCCGTCCACTCTTTCTCCTTCCCCCCCGGTCCACGTTTCCCCGCGT TCTCGAGTTCTCCCGACATGACCCTCTTGGGTAGCCTGTGGTCACCCATG CGGAGTAGCGCCCCCGCCCACAACAACCTCCTCGTGCGTACGGTTGTTTC GATGCTCTCGCATTGGGTTCGGTGAAGGGCATCTTTGTACGAGAGAAGAG TACAGTATATGGATCAACCGGGTGTGTGTGTTTTTTCTTCCCATTCATTC TGGACATCAAGTTCGTTGGACGTACCAGCCGGGGTCACACAGGAGGAAGG TCACACAGGATTTCTCATCCACCTTCTTTCTGCGGTGCGTGCCTTAATTT TTCTCGCGAGAAGGATTCAGCAATTCCTTTCCCTCGTCGACCGTGAAGTC GAATTTTGTGTACTAACGATTTAATCGTTCTCCACCCGTTGGGCATTTTT ATTTTTGTTTTTTAGTTTTTTAGTGAGAAAAATCCCGTTTTCCGGGATCG AACTCACGTCCCAACGTGTCAGAGGGTTACGAGGTACCTCTGAGCTACCG GGGCGACCAACCGGGTAAAGTTGCCAATCCTGCTTGTGGTCAGCTGAACA GGGAAAATGAATATTTCTCTGTCCGTGTTCGCGCCTGAAAATTTGGTCTC GCTAGACGGTTTCGGCAATCCCATCCCGCGTCAGCCTACTCATCTCTATA CTAAGGCTGAAATGGACATACGATACAGAACGTTTGTTCTTGTTTTGTTA AAAATATGAACGCATCTAGACCTTCTGAGCATCCCCCAGTCAGGAGGGAA ATTGTCAAAACGATTGTTTTTGTTTTGTTTTTGTATCTCACTTACGGCCG ATGGGCCTCAACGTGCTAGGTTACCAGACCCACCTACTTCAACGTTGCCA TTACCATCCTGCCTGTGCCCACTATCAATAAGTATCTTCCCATCCCTCCC CGGCTCTCGCCTTAATTATGTTTTTTGATCGCATTGGAAGCGGTATAACT ATTTCATGAGTTTGTGTCTGTAGGTCTGTCTGTGGGTGTGTGGATTTTCT TCACATTAACCAATCGGACCCCAATTGTATCCAGTAACCCTGACGGGGGG GTGCTCAGAAGGTCTAGGCGCGTTCTGATTTTTCTTTAAACACACGTGGT TGCCAATCCGGTGTGTGGTCTGCTGGACAGGGAAATATAAGAGGGAGGAA CATATACAAATGCCCCAACGGGAGAATAAAAAAAACAAGATGAAACGACA AACATAAATTAAATTTAAAGAGAAAAAAGGGATGGGTAGAGCGTCGAAGG ACGCAGGAAAGCGATAAATAAAGCACCGGCGTGGCGCATAAATACACGTA CACAACACAGAAAGGGACACTCGCTACTCGTAGGGAGGGTTTGGTATAGC GCCAGCCGCGTTCGCATCCGATGCTCCCCTCCCCCGGATCACATTACCTC CTTCGCATTTGCACGCTGAAGCATAACATCAAATACACACTACTCCAAAG ATTAGCAGGCTTCCCTATTGGCGCAGCCGGCGCCGCTTCGAGAGTCCTGG GGTCGGTCCAATTAAAGTAGCTCTAAAACGAGCTTCCTACGGTCATCCTA GGTGCGACCTCAACCATGTCCTTCTCTTCCCTCTCTTTCTCCCTCTGCCG GTTTTCGGACGCCTTTCCCTTTTCCTTTTCCCTCACCCACGCGGCCATAA ACCTGCAACAACCAACCCCCTTTGCATACTCTGTACAATTACCAAGCGCC AGGGTCAAGTGCGGCGGGACGTATGTCCTCCGTGATACTAAACGCCCGAC GACCCTCTGCGACTCAGTCCGGCCATTATTTATCCTTCCTCCCCGGTCCA CGTTGCCTGGCGTACTCCAGCTCTCCCGAAATGACCCTGGGTTATCTGTG GTCGTCCATGCGGAGAAGCGCCCCCGCCTACAATAACCTCCTCGTACGCA TGGTTGCTTTGATACTCCAAAATCTAGTTCGTCGGAGAGCGTCTTTGTAT GAGAGGATGCGTTTGTTCGTCGACTTACTGTTGCACTAAGCTCCGAGGAT TCGAAGCAACATCACCATCCTATGATGTGCGGTACGGACTGTTGCAGTGA CCCTTAAAAGGGGTCTATGTCGCGCATCCGTGTAGGAGAGAGCCTCTACT AATAACACCTCGGATTTCACCACTCGGGTCTTCAGGTGCAGCAGGCTTGC CTTCGGGCGGTCGCACAGTTCCGTGTGTACAGTAACGCCTGAAGCTCATT CACCCCGCACGGATCCGACGATCAATCTCCACCGGAAGGCATGAGGTTTC AGTGACGGCGCCCCCCAAATAGGGGAAGAAGAGTAATCGGCACGTACATG ATACCGTGTATTGCTCTCAGGGGTGGTCACACCAAATGTGTCGAAGACTT CGACGAAGACCGCCATCATCATCATCATCCGCTCCAACCCGAGCGGTGAC CGCGACACGATGCACGCGTCGTCAGCATACATCATCCCTAAAAATAGCAC GTAGGGCACGTTCCAGTGCCGTGTCAGGGCCAACCTTCGCCGGCTGCTCT TGAAGATCAGCAAGATCTTGAAGTATGCCCGCGTGCTCGCTGAATCGCTC TATTAATAGTGCAACGAGGAGAATCGCAACAAACAAAAGGTTGAACGGCA GCGGGGAAAGCACGCATCCTTGGCGTAACCCCTGTGCCACCTCGAAACGA CTCCGAGCATACGCCATCGTCGTTCCACACGCAAGCTCTCATCCCATCGT GGAATTTTCGGATTACTGCTATTAATATTAATATTAATATAATCTTCGGC GGCACTCCGAAGTGCCGAAGCTCTTTAGATAATGTACAGGGTGCGCGTTA GAAGGTCGAAACTATTGGACTACTCACTCAGGACGCAAAAATGTGTCGCC CTCTCTACCTCTGAAGCAAAAAAGGTTGCTCTTGGCGACACAGTGAAAAA GTTAGTTGTGGTAAACATTAAGATACTACAGTTCGTGGCGAGGGGAGCTG CCCCGGAGATCACTGTCGTCGCTATTAATACCGGGGAAAAGAAACCAGAC AGCCCAAGACATAGATTTGGTGAGTTAGAAGGGCTAAACTAAACTAAACC ATTAGAGCTAGACTACTCAGTCATGTGACTGAATAGTGTAATGGTTTACG TTTAGCCTCTCTAACTCACACAGGGACTACCTTTATCTTCTATCTTCTAT CTTCACCTCCACAGCAGCAGTATTAATATTAGTATTAATAGTCCAGATCT CCGGACCATTGCCTGTAGAAGTTTTGACTGCATGTGGACTCTCTCATCAA GTTTGTGGTTTGGAACAGTTTGAGTCGTGCTGCACTGTTTCTAACTGTTG GGCGAGAAAATAGAGCACTCTAGTATACCTGTTCAACACCAAGCGCACTA TTTATATCAGTCTATCTGTAGTACTTACCAGGTACTTCTATAAAATTAAG CTGTTGATACATGATCCACTCTAGATACGAGTGTTCTCGTGTGTAGAGTA TGGCGCGAAGATGGATGCTAAAGGGTTCACGATACGCTCTGCCATAGAGA AAGGAAGAGCCTCAATATTCGGTACTGATGCTGTTGTAGGAATAGTTGAA CAGTATCCGAATGTTGATATCAAGCGTCGCCTTGGACCCGTTGTATTTCA GTACAACAGTAGTATGCGACCCGTTCACCCCGCTGCCGGAGACGTCTGGA CTTTCGGTCGTGGCGCTTCCCAGAAACGTACACAGGCATGTGCTAGGTTA TACCTGTGCCCGGGGGGGCCTATTAATCTATTAATAGACTTTCACCGCCC TTGAGAGTGAATACCATGGTACAGACATCACATTTTTTACAGGCGATAAT AGGGAAACCATTACCCTTACGACCGACCGACCGATAGGGAAAACTACGAC AAGTACGGGGAGGATGGTCCGCCCGCTGATCCGTTCGGCGACATTTTTTC ACAATTCGGCTTCGGGGGCGGCCGACGCCAGAGGGATGAGGAGCGCCGAA CACCTAACGTCGAGGTGCGATGAGCAGACCGCTCCTAGAGTAAAAAAAAG GTGTAGAGCTTCTGTGTTATTGAGTAGGTTTCCACATAGTGGATGGCGAC TTTGCTGTCGGGCCGAGTGATTCAGTGACAAGCAGTGGAAGCGAGGGGGA GGGCGGGATTAGAAAATATTTCAACGCTTTAAGGTATAGAGCCTGTTCCG AAATATCTTCTTCCAAAGTGGGACAGATTTTATCATTTATCTCGTGGAAT GAATTGTAGCAATGACTTTTTAACTATTAATAGTCGGAGCTAAAAGTGAA ATGTGAAGGAATGGGCCCGGAAGAGGGTGCCTCTAAGCCTCCTCCAACTC GGGAAAAGATCGATGACATTTCCCGCATTGTGCATTGTTTGAATGATTCA CGAAAATGATTGAAAGCACACAGTGTAGTGGCAACCGCCCGGGCAATAGC TGAACGTTCAACACCAAAGCTATCTATAGAATGAGAAGAGTAATGTGCAC TCTAAAAACATGTATCTTTACCTTTTTGACCCATTCATTTTTTGTTGTTG TTTACAAGTATCTTTACCCCCGCCCCCCCCAATGCTACACCTCTGAGGTT GAGTGAAAACAGAAAATGGGGTTCATGTTCATTGTAGATTTCTTAAAGGA AATCGATTTCCATTTCGACCACTGCAAACGAACTTTTTTTCCCAGAATTC AGACGAGTCTAGGCTACCCGTGCGCCACACATCTTTTCGCTGGCAGATAA CGTCTTACAAGGCCCAATGTTTGTTAATGTTATCCCCTCCCCCCCTTGAC CCTCGCACCGACTGCACCTGCACCTGCACTTTCACATCCATATTTTCTGG CCAGATCCCTTTGAGAGTGTCGCTGCGCCAGCTTTACCAGGGAGACACGT TCGACACGCTATACGTGAGGCAGGCCATGTGCATGAAGGCTTCCCAGTGC GAGCGAAACTGCAAGGAGTGCGCCGGCCCCGGCATCGCAATCAAGATGCA CCAGCTCGGCCCGGGCTTTATGCAGCAGGTTCAGGTGAGGCTTTCCTCGG AGTCGTGTTATTATCGTGATGGGAGAGGCAACGCATGATGGCAAGCTGTT GTTGAAAGTCCAGCTCTCTGTTAACAGTATATATCTACAACATGCCCAAG AGTGCCCATGGGCTCTCACGCTGAGATTTTACTCGGCCGGGTTCGCCCGC GTGCACCACCTCTCCCACGGAAAATGCATATATACCTGCTTCGCCTTTTC CCGAAACATCATCATGCTTGCCCCTCGCGTACGCATGTGCGTGGTGTCTT CCCTGCCAGTAATGTCCTGAGGTTCACAAGACAGAGCTGTAATGGATGTC GCGTTTGGCAAAACGCATCGAAGAGCAAACGACGAACTCCTCACTCATCC CCCACCATGTTACTGTATTGGTGTAGTAATATATTGCTGTTTTCTCTCTC GTGCTGTGCAGATGCGCGATGATAACTGCATAACGCGAGGCAAGTGTTGG AAGAAGAACTGCTCGGCGTGTCCCGATGGACCCACCGTTCAGGAGGAGGT TCACCTCACGGCGGAGGTGCAGAGGGGTATGAGGGACAGGGACACCATCG TGTTCGAGGAGGTGAGGAAGGGATTCCCAATGTGTGCGGATGTGTTTCCC CGTGAGATGAGTGTTTCCCCGTGAGGTGAGCACATGGCGAAGGCTAGCTG GATCTAACATTTGCACTGAAGCTTGTGTTTATGACTCTATAGGATCTATT TCATCCTTGTGAACCGTGTGCTTATGTCATGGGATGCTCGGTGCAAGTTG CTGGTAGGTCGTCACGTGTGGCGTGTTTGGCTGGGTGGTTGGTGATGCGA AAATATTTACATGTGAAAGAGTTTTGGGCAATGAAGCAAGCTCCTGGCGT TTCTTCGTGTGCGACGTTTGAGAGAGTTTGCGCTATCGCCGTGCGACCTG TTAGAATTTCTAATAGGCGTGAGGCGGAACCAGTCAATCGTCGTTGTCTC GATGAGTTGGACAGGGGGTAGCAGCTGTGGCGATCATAACGTGGGCATAT CACTGGTACATGGTTTGTCGCGAGTTGTTGTACTCCCATCAATTCTGCCT GCATAAACTTTGTTTAATTCTTCATTTCTCGCAATGTAATACGAGTACGG TTGTATATTTTTTCAACTACCCTTCCCGTTGCATATTTTTATTGCGATTG TGTGTTGTGAATGTCCTCCGCAGGTTGCCGATGAAGCGATCGGGCAAAAG GCTGGCGACTTGGTTTTCGTAATCGAAACCCTCCCACACCCAGACTACAC GCGCCGAAACGACGACCTACACATGGACATGGAAATCCCTCTCGTGGATG CCCTGGTGAGGCGTGCGCGCTGCTTCGATTTCCCACTTTTCAACAGTGAA AAAGAATAGCATTAGTATTAGTAGTACCTTGATACAGTACCAGTGTTGCT TCTCTGCCTTATTTCCTCCGCTCGGATGAAGGTGGTATTCATATTCATAT TCATATTCATAAACGTGTGCAGTAGGTCTTGACGGCCGCAGGATGTGTTG GGTCTCTCGAGTATAGCATTGTGGTGCCGATCGCCCCGTAACAGCTTCCG CCACTGGCCGATCTCCCTACCATCATAATTAACAAGGTTGTACTTGGTCC CTGTGTTACATTATTGTATGCATTGAAACCCCTCGCACAAGTTTCGGATT TTCCAGCGGACGCATGAACCGACCGAGCGCGTAGAATGATCGAATGCCAA CGTTTATAAGCACTAAAACTGAATAAACGTAGAGGACACCGTTTTCGCAT ACGCCACGAGTTTCGTTGTATTTTTGTGATCCATCCGTCCTACCTCTATA TTTTCCTCTGCAAGTTGCGTCTTCGTCCCCTTAGTTACTCTTTCGTAAAT ACCCGACGTATTCCCCACGCCGTGAAAACATAAGTCTGGCTTCGACATTG CTTTCGAGCACCTGGACGGTCACGAGGTCAAGGCCGAGAAAACCGGCATT ACCTCTCACGGGGACGTGATGCAGCTCAAGAAAGAGGGCATGCCCAGGCG AGGGGGCGGCGGCAAGACCTTCGGCAACCTTTACATCCGCTTCTCGATCA TTTTCCCCAAGGTACTGTCCTCGTTGAAGCGATGAATCGTGTTTGCTCGC CTGTGTTTCGTGGCTGGAATACGCTCCTCGAAAAGGTTTTAATTTTTCTT CATCAAAGGAGCCATATTTCCACGTTTAGTTTTCGTGTTTTACTTCACAC GATCAACATGATCAATGCCTCCGCGCGACGTATAATCCAGGTACTGTGGT GTACTGTACAGGTGCTGTACACCCAGTCATGAAGTTTCTTCTCTCAAGAG TTGGTCAGTAGTTGCACTTGATTCAAGCCGCTCCCTCATATAAATATATA CCATACAAGATTTCCCTTCCGAGGGCTTCAGTTAGGTATGGTACCATATG TGTTGCCGCAGATTATTTATCCCATTTATTCGATTTGGTTGATCGTAGAA GGCGGAGGTAATTATACGTACGAATGATATATATATAAACTCGCGGTAAC GGCGGCGTGAAATCAATCAATCGATCGCGACTCTTGTGTCCTTTGACGAA CCACCCTCGCGCGGAACAACGCTAACCGTGCTCTCCTTGATCGGCCGATC GAAACAGTCGCTTACGACTGAGCAGGTGTCCACTATCCGTGGTGTTCTCT TGGAGGCGGATCAAACCACAGACGAGCGGGTGGAGTTGTAGATTAAAAGA CTAAGGACGACTGTAGGGGATGGCAATTGAAGTCGCACATCCAAGGCGTG ATCACACGGATACCCAAGGCATTAATCAACCAAAGCGTCCCGCCAAGGCG TCGACGTTTTGGTTGGTGACGAAAGTGTGGACATCCGGGGCCTTGGAAAA GTGCTGTGCTGCGGTGCCGTCTCTAATATTAGGAGAACGGCTAGCTCGCC GCCACGATTGCAGTGCATTTTGTTACATTTATCTGTCTTTCTTTTTTTGT GTGTAAGAAATGTGCGTGCAAAGCTGCCTGTGACTGACTTTTCAAGTTTG AAAAATAAAAATTGTAGCGTTTTTTTGTGAAATGGGCTTGAACTCAACGT CGGTCATGACGTGAAAGCATTGCGTTGTTGGTGATGTAAGTGGACAACAC CGAGGGTTCCCATCGTTGCGCGTCTAAGTTGGGAACCCCTCAGCAGGAAA CCATTTTGAGGCGTACTGATGAGTTGTAATGGCGGATCTACACTTATTAG CACCAGAAACATGATGCAAATTCTGTTCCGCAGAAGGTATCCTTCTGTGG TCGCCATAGAAACCTTTAGATTGACGCTCGTCGCGCATCCCCGATCGCGG TCGGGATGGAAACATACCTTCCTTAGTCGCTTTTCCACTCTGCGCTCGAA AGCAAGCGACCTACCGAAAGACAGTTTCGTCCATACAGTCTCGGGGAATA AAAGCGCGAGTTTTGGCGACCAGAGGCTTCGAACTTTACAAAATTGGAA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig93:97205..108253-

>mRNA_A-nodosum_M_contig93.20.1 ID=mRNA_A-nodosum_M_contig93.20.1|Name=mRNA_A-nodosum_M_contig93.20.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=651bp|location=Sequence derived from alignment at A-nodosum_M_contig93:97205..108253- (Ascophyllum nodosum dioecious)
ATGTGCATGAAGGCTTCCCAGTGCGAGCGAAACTGCAAGGAGTGCGCCGG
CCCCGGCATCGCAATCAAGATGCACCAGCTCGGCCCGGGCTTTATGCAGC
AGGTTCAGATGCGCGATGATAACTGCATAACGCGAGGCAAGTGTTGGAAG
AAGAACTGCTCGGCGTGTCCCGATGGACCCACCGTTCAGGAGGAGGTTCA
CCTCACGGCGGAGGTGCAGAGGGGTATGAGGGACAGGGACACCATCGTGT
TCGAGGAGGTTGCCGATGAAGCGATCGGGCAAAAGGCTGGCGACTTGGTT
TTCGTAATCGAAACCCTCCCACACCCAGACTACACGCGCCGAAACGACGA
CCTACACATGGACATGGAAATCCCTCTCGTGGATGCCCTGTCTGGCTTCG
ACATTGCTTTCGAGCACCTGGACGGTCACGAGGTCAAGGCCGAGAAAACC
GGCATTACCTCTCACGGGGACGTGATGCAGCTCAAGAAAGAGGGCATGCC
CAGGCGAGGGGGCGGCGGCAAGACCTTCGGCAACCTTTACATCCGCTTCT
CGATCATTTTCCCCAAGTCGCTTACGACTGAGCAGGTGTCCACTATCCGT
GGTGTTCTCTTGGAGGCGGATCAAACCACAGACGAGCGGGTGGAGTTGTA
G
back to top