mRNA_A-nodosum_M_contig9281.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9281.1.1
Unique NamemRNA_A-nodosum_M_contig9281.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9281.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9281contigA-nodosum_M_contig9281:20449..20945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G985
Model size497
Max annot lvl2880.D7G985|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000775
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size186
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870401.4493659-UTR-A-nodosum_M_contig9281:20448..205241680870401.4493659-UTR-A-nodosum_M_contig9281:20448..20524Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9281 20449..20524 +
1680870401.4743664-UTR-A-nodosum_M_contig9281:20710..209451680870401.4743664-UTR-A-nodosum_M_contig9281:20710..20945Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9281 20711..20945 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870401.4621701-CDS-A-nodosum_M_contig9281:20524..207101680870401.4621701-CDS-A-nodosum_M_contig9281:20524..20710Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9281 20525..20710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9281.1.1prot_A-nodosum_M_contig9281.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9281 20525..20710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9281.1.1

>prot_A-nodosum_M_contig9281.1.1 ID=prot_A-nodosum_M_contig9281.1.1|Name=mRNA_A-nodosum_M_contig9281.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=62bp
MVNVFSIKCKTEGCGEEPSFGVVGRKTAEYCAQHATHGMVDVCSKKCRTE
NCSKRPLFGGR*
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mRNA from alignment at A-nodosum_M_contig9281:20449..20945+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9281.1.1 ID=mRNA_A-nodosum_M_contig9281.1.1|Name=mRNA_A-nodosum_M_contig9281.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=497bp|location=Sequence derived from alignment at A-nodosum_M_contig9281:20449..20945+ (Ascophyllum nodosum dioecious)
AGGCTGTAGGATAATCTCGGTGTTCGGAACCAGGGCAAAAACTGTGGACT
GCTGCGCATAGCACGCCCTGGACGGGATGGTCAACGTCTTTAGCATAAAG
TGCAAAACCGAAGGCTGCGGTGAAGAGCCGTCGTTCGGAGTGGTTGGTAG
AAAAACGGCAGAGTACTGTGCCCAGCACGCCACGCACGGAATGGTTGACG
TCTGCAGCAAAAAGTGCCGAACCGAAAACTGCAGCAAGAGGCCGCTGTTT
GGAGGAAGGTAAAGAAACGGCGGGAGTACTGTGCGCAGCACGCCCCAAAC
GGGGTGTTCAACGTCAAACACAGAAAGTGCAAACCAGAGGCTGCGGCAAG
CAGCCGTCGTTCGGAGTGGCAGGTACAAAAACAGCGGAGTACTGCGCAGC
ACGCCCTGCACGGAATGGTCAACGTCTGCAACAAAAAGTGCAAAACCGAA
AACTGCAACACGAGGCCGTCGTTTGGAGAGGCCGGTACAAAAACGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9281:20449..20945+

>mRNA_A-nodosum_M_contig9281.1.1 ID=mRNA_A-nodosum_M_contig9281.1.1|Name=mRNA_A-nodosum_M_contig9281.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=186bp|location=Sequence derived from alignment at A-nodosum_M_contig9281:20449..20945+ (Ascophyllum nodosum dioecious)
ATGGTCAACGTCTTTAGCATAAAGTGCAAAACCGAAGGCTGCGGTGAAGA
GCCGTCGTTCGGAGTGGTTGGTAGAAAAACGGCAGAGTACTGTGCCCAGC
ACGCCACGCACGGAATGGTTGACGTCTGCAGCAAAAAGTGCCGAACCGAA
AACTGCAGCAAGAGGCCGCTGTTTGGAGGAAGGTAA
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