mRNA_A-nodosum_M_contig9271.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig9271.1.1
Unique NamemRNA_A-nodosum_M_contig9271.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig9271.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig9271contigA-nodosum_M_contig9271:16293..17070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size778
Hectar predicted targeting categoryother localisation
Exons1
Cds size474
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870400.0036578-UTR-A-nodosum_M_contig9271:16292..165961680870400.0036578-UTR-A-nodosum_M_contig9271:16292..16596Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig9271 16293..16596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870400.0169392-CDS-A-nodosum_M_contig9271:16596..170701680870400.0169392-CDS-A-nodosum_M_contig9271:16596..17070Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig9271 16597..17070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig9271.1.1prot_A-nodosum_M_contig9271.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig9271 16597..17070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig9271.1.1

>prot_A-nodosum_M_contig9271.1.1 ID=prot_A-nodosum_M_contig9271.1.1|Name=mRNA_A-nodosum_M_contig9271.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=158bp
MSSDPSSVTLPSGNDVLTVSPPIGPAVCTASLRLPSTASPVRSLPMPSEV
PLTVQISTVLSDIEILPPRPCSSVAVTTAPLACASPLTERALRSQRRDDL
RALHDVVVTSSPTTVRPHDTLAESEIRAQISNSCIRPFTPQRQISVYDYS
TSATALV*
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mRNA from alignment at A-nodosum_M_contig9271:16293..17070+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig9271.1.1 ID=mRNA_A-nodosum_M_contig9271.1.1|Name=mRNA_A-nodosum_M_contig9271.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=778bp|location=Sequence derived from alignment at A-nodosum_M_contig9271:16293..17070+ (Ascophyllum nodosum dioecious)
AGGTCTCTCAACGACGAACACTTTCATTCCTTGTGGGTTAGCCATCTCCT
CTTGTGGACTGGCCTCCATTTCTACCATAGCTGCTACAGCCTTTGATAAG
AGCTCCAAATAGCCCAAATAGCACCATTTCATTGAAGCAGACATTCAACC
GCATTTTCGTAACCGGAAATATTTTCGAGTACAAAAAGCAAAAAACGGGG
ATCGGGGAACAACCGTGTACAGTGCTATACACGCGTGTGTGGCTCACAGG
GCTTCCCCACAGATCGTACGTTCACTCGATTGGTATACTTCCTCCACTTT
TCAGATGTCTAGCGATCCCTCTTCGGTTACCTTGCCCTCCGGAAACGATG
TTCTCACTGTATCGCCGCCTATCGGACCTGCTGTTTGTACAGCCTCGCTC
CGCTTGCCTTCTACAGCCTCGCCTGTTCGGTCGCTTCCGATGCCTTCTGA
AGTACCTCTTACAGTACAGATTTCGACAGTACTCTCGGATATTGAAATTC
TGCCTCCACGTCCTTGTAGCTCAGTTGCTGTCACTACCGCGCCACTGGCT
TGCGCCTCTCCGTTAACCGAGAGGGCACTACGTTCTCAGCGACGAGATGA
TTTACGTGCTTTACACGACGTAGTTGTCACCTCCTCGCCAACAACCGTAC
GCCCCCATGACACCCTAGCCGAAAGTGAAATTCGCGCCCAAATTTCAAAT
TCCTGTATACGGCCCTTTACACCCCAACGGCAGATTTCTGTATATGATTA
CAGTACCTCTGCCACCGCCCTCGTGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig9271:16293..17070+

>mRNA_A-nodosum_M_contig9271.1.1 ID=mRNA_A-nodosum_M_contig9271.1.1|Name=mRNA_A-nodosum_M_contig9271.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at A-nodosum_M_contig9271:16293..17070+ (Ascophyllum nodosum dioecious)
ATGTCTAGCGATCCCTCTTCGGTTACCTTGCCCTCCGGAAACGATGTTCT
CACTGTATCGCCGCCTATCGGACCTGCTGTTTGTACAGCCTCGCTCCGCT
TGCCTTCTACAGCCTCGCCTGTTCGGTCGCTTCCGATGCCTTCTGAAGTA
CCTCTTACAGTACAGATTTCGACAGTACTCTCGGATATTGAAATTCTGCC
TCCACGTCCTTGTAGCTCAGTTGCTGTCACTACCGCGCCACTGGCTTGCG
CCTCTCCGTTAACCGAGAGGGCACTACGTTCTCAGCGACGAGATGATTTA
CGTGCTTTACACGACGTAGTTGTCACCTCCTCGCCAACAACCGTACGCCC
CCATGACACCCTAGCCGAAAGTGAAATTCGCGCCCAAATTTCAAATTCCT
GTATACGGCCCTTTACACCCCAACGGCAGATTTCTGTATATGATTACAGT
ACCTCTGCCACCGCCCTCGTGTGA
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